XLOC_012018 (gene) - C. hemisphaerica

Overview
NameXLOC_012018
Unique NameXLOC_012018
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000386:44360..50229+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012018 ID=XLOC_012018|Name=XLOC_012018|organism=Clytia hemisphaerica|type=gene|length=5870bp|location=Sequence derived from alignment at sc0000386:44360..50229+ (Clytia hemisphaerica)
ATGAGAAGTGGAGTGGCAAGTGGAGTGGATGATGGAAATCCTGGATGATG
ATCAGTGACGGTGGAGTGATGGAGTGGTACCTTGTGGAGTTTTTTTGACA
GTTTGAAGTAAGTCTGAGGAACTTTTTCATGATTTCCTTGAAAGTATTTC
CTCTATGACTGACTTACTCAGAGGATGTTTCTATCATTTAAATTTACACT
ACAAAAATTTGAACCTCCCTTCAATAAAGCACAATCATAATAGTACGGTG
CAAACAAGCTGGCAAAcaagaaatttcaaacttactaATTTGACTATCAG
ACAATTCTTTATAGTTGGCTCAGAGATACCTTTTATGATCCTAGATCACC
TCCAACTTTTTCATAATTGGCAAGTTTCAAAATTCTGTTCTGTTCTGTTC
TGAATGCGGGACGTGAGCAAAACGAGTGCAAAATTGAGCTAggcattttc
aattttcaaaacgttttgGGGGCAGAGGGCCCCCttagaaaaacttttaa
cattgAATTGAtgtgaaaattaccaaaatccTGTCTAATCTAATGTTTCc
cttttttatcattataaaAATCGATCAATTTTTCGTGACTTTGAGCATAA
CTCTAATGAATATTTGGACAAACAGAGGATTTGGGCGTTCAGCCGGACAA
AACGTTAATTTGTGTACATATGTCACGCAGGATGCAGGACACTTGGTACC
TAACTATGCTTTTTTCACCACTTTTCACCTAAGGCggcaataaaaaatat
gttgCGTTCGGGTCGTCTGACCGactgtttatttacaagaaaacccGATT
CGTTTTTTTTGGGCGCTGTTTGCAGGTTTGCAGGATCTTtccttatctga
tattccaatGGTGTTTTGGCGGccacccacgctaaagctctgaaggagcg
ggccaatatcacatcggagacctatagtagtcatcgtttgaGGTACCGCA
TCACATTCGTGTCTAGCCGTCCTTACACTTTTTTCTTGACTATCGgttgc
acccgactgaatttagcatgaaaatctctgctgcctgagaaGTCCTGAGA
AACATTCAAACCTTCGATTGTTGGCtgtttttggtttattttggtagatt
tattgaaacttgacagtttcattactttttcagTATATATTATATTTAGT
ACCTATTGTAATTTCTTAGTAAGTGCACCAAGTTAAAAGTGCTTGACATT
GATTATTTGTATtattatattttgttatttatttgtttttggtgGTTGAC
TGGTTATATTTTTAAAGGCCAAATCAAAGAAAGCATATCAGGTatatttt
atttagttttacCAATAATTTTTATGCTGAAATTTTAAACTGCTGCATTC
CAATTTAGACCTTTTAGTTAGAGCCTGTCGACCGCCCTCCATGNTTTTAC
CAATAATTTTTATGCTGAAATTTTAAACTGCTGCATTCCAATTTAGACCT
TTAGTTAGAGCCTGTCGACCGCCCTCCATGCAGAACAGTGGACCGCCCAA
CCCCAACCGACATCAACAAACTTGTTGATCATGACCTGTGTGTTGTTTAT
TTGGAAAAGCCAGAACCCTCCTTCATCAATAACAAAGTTGGAGGGAGGTT
CCCATATATTGTATCAGTATCTTGGGGacaaagcttttattttttggtaA
CACAACCATCTTTGCATGTTTTGCCACCAATCAAACTCTATTTTTAGAGG
CTGACATGCATATTTCAGGTAGTGAAAGATCTAGTGCAGgtgtaattttc
atttggtGTGTTGAGGCAAGCTTAGTGATTCTGCAAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AtcgcttgtttacttttttaggCAGTGAAAGATCTTGAATAGGTGAAATT
GTCATTCGATGTGAGGAGACAAACTTATTTATTCTAGTAGCAGCAAAGAA
TTCACATTGTATTGCTATAAATTGAACTGTAATTGGGTTTGGGTTTAGAG
CCACTCTCAATAAGTTTTAGTTTGCCTcctgctttgtttacatttttcag
ttCAGAGCACTATGTAGAAATCAcacgggaaattttttttgcatgtgtAC
TCTTAGTTCGGGGCACTAGTAACTTTTTACCCTCCCCAGACtctttctaa
attttacgaACGCGGTCAGGAGGAATTCCGTAATgcaaaggttccagatg
ttaaaattttcccgttcttcagagctttagcgtgtcggaagaaatttcta
catcgagtaccagataagATCTTTCCCATAATGGTGGGCGGGCAAACGGA
GCATGTCTTTGAATCATTactttttgtttacttaacccacattgagtctc
TTTCAAGTTTNAGCTTTAGCGTGtcagaagaaaatttctacatcgagtac
cagataagATCTTTCCCATAATGGCGGGCGGGCAAACGGAGCATGTCTTT
GAATCATTactttttgtttacttaacccacattgagtctcGTTCAAGTTc
ttcatgtacccttattgaaattgtCATGTCAAATTCAGCAAAgcggtagg
gccaatacccTGGGGGCCAAAAATAAGGGCCGCTTTAAGGTTAACACATG
CGCGCGCACATTTAGTTCAAtggcaaattaaaaaaatatggtggcataag
attctgttgattaccgacttgattcatcgggatttactagatcttaaaaa
tccaacaaaatttactaccgaccaactgaccgactgaccgactggatttg
aaaaCATAACATAAAACATATATGAAacatatatttttgattgccgccta
attactttttaaagctgagatatttgactttgaagTGTTTAGAAATTAGT
CTTGAATGGAATCTCCTTTTTCCTGTTTCAAATTTGAATGATACGATGGC
TGTTTGATTTCCAAACTTGATCAAACAGCTATCAAACTTTATGAAAATTC
CTGGATTAAGTTGATTTAGTTTAATGTTAAGCTTGTCTggcacaaaaaaa
ttcaagtcaCATAATCTTACCTTTTAGCAACTTAGCCTTGCCTTGAACAA
CAAGTGGCATTGGCTCAAGAAGTGGGGGGGTATTTTGGACCATAATATAA
ATGCCGTATACAAGCTACATATAAAAAACTACCGTCCAATCGGCAAACAC
AAATCATAGGAGGTTAAAACAAAACACCGCCTCTAAACTCTGAATCTTTT
TGTCTAGTTGGTTGCTAAATGCTTATGACACTTTTAGATATATTTATAAA
CAATCAAAATTGTGTTTGCTATTTTGATGGTCTGATAATCACTTTCTTTA
GTATGTTTATTCATTACTATTATTGTTCTTTGGGTTTGGTCTGGTTAAAC
TTATAAGAGAAACTTTCCTGAGAGAAACCGCAAAATTTATTGACctaatt
attttccaaagctgaTATATTGCACTTTAAAAATTGCCAGGTCTCATCAT
GAGTTCACTGTTTTTAGCCTAGTGGCAGGAATTATGTTCTGAGAGTCCTG
TCATTTatttcaagtttgaaaaataattggGTCAAAAGATTATTAATGGT
TTTTACACGGCTATAGATTGAGTCTATAagccaaatataaaaaaactgtC
TGATTAGTTTTCCCATCAAAAGTGATTGCGGGGTGGTATGTCCTGCAAGG
TGGTAGCAGTGTTGTAACTTTTCCGTCCAGCTGAGATACAAATACGCTAT
TTCTGACCAaagattttttaacaaattccGTCCATAGTTACAAAACCTGG
TTGCAACACTGTGGTAGGGTAATTTCTCCAGAGTTAATTTGTATCCCTCT
TATTTCCTCATTGCACTGGACGCTGGAAAAAACCACAatctgaaaattat
attttctcaTTGTTTCAAATATATACTACCAGACCTATTAGGTCTTTATC
AAAActaatgaaactgattttttaaTCAGAAAATAACCATTGCGTTTTAA
AATCCATGGTTATAAAAGATATCACCTATCTTTCGAACAGGGCTTTGAGA
CAAAGATTTATAGGATGATTTGATTGCAGTATGCAAAGATGTGATTGCAG
TAGATGGATTTTGATGAGCCATACCATTGCAATTCCTTTGTTATTTAGAA
tgaattgcaatgcaatgtgCTCATTTATGCTCATATCTGAGCAGGCAATT
tgaaacaaaatgtaaacaatacAAATGATGTCATCCAGAAAACCATCTAT
ATATTTCAAACTGATTTGATCAACCTGTATCACTTAGTCAGACTTCAGAT
ATAATAGGCCAATAATTTTGTTTGGTTTACATTGTTTTCAATTGATtcaa
caatcaaaattttcttttatactCAGGAAAATACCCTTAACCACCAATAT
TTGAAGAAACTTTCAAACTCTAACAGAATTACGCTCCTGCAATGTTTAAG
TTCAAACACATGATGGATACTACAGACAAACAAATGGCTTAACAATGGGG
GAGCTGGACATCATTATTAGCCAACAGATTGACTTCACAAATACAACGAG
TGAATCAGAGGTGAAGCTAAAATCTATGCGTGCTATGGATTATATTGTTt
gtgaaataaataaaagtgaaattgaaGAAGAACTTAGAAAAGATATGGAT
CAAGAGTATCAATAACTTGCATGATAATTTGAAATTCACTTGTGAAAGAG
TGCATAATTGTTCTATCCCTTTTTTTAACATTcgttaacatttttaaaaa
tgaatttctaTTGTTAAAAAGATGTAAATCATGTGCGCCATAGAATACAT
TAGAAAGTTACCGAGCTTTACATAAAATTGTTATAGTGTAGTTTAATTTA
ACATTTGTTTAACATTCTGGAGGTCTATCtgatttatttttagaaatgtt
agcAAATGTTAACCAAAAATATATATGATTCTTATAGGGATTTCGAACTT
CCTACCTACCTACCTTAGTTCTTCTAATTTAAATTTAATCTTTAATCATG
GTTCCAATCACTCCCATCATTCTGATTGTgtcatttttatgttttcagtt
gttttttgtcatgtttgtttatatttttcagttttgtcTGCATTTTACAC
AACTTTCTGCCATTTAGggtatttttcatttgtttggaTAGATTAATTTG
AtcagtattttatttatttatttcaatacCTAGTTTGCTTTTTTCactaa
tttatttcatttttacataaattatatttattatttggtTTGTATTTTAC
ACACCTTGCATAAAAAGAGCTCAGCTCAGCCATTTGTTTATTCCGACAGA
GACTACCAAGGATTCAACATCAAActtcaattttgaaacttaaTCTAATT
TAGTCTCATGGTCTCACACTAATCATTTTGGACTCCACTTTTACACTTGG
TGTTAGTCCACATACACCTTCTGCTGCCTGCATACAGCCTTCACATTCAG
GCCAGCTGGTgagtttttgttctttttgattTTGCATTTCTTTTTTAAGT
TAAGTTAGCTtttcatttcatatttttatagcATTCAATTTACTTTTTAC
ACTCACATTAGAACTATGTCATTGAACTTATAGAACTTTGTCATTCATAT
TTATACTTCCAAAATATCATTTCATTGgacttatttttatattttagttt
GAACGCATATGCACATCAATCATGTTCAATAAATGAATACACTTGACAGT
GGTTACAAACACGGCTACCACCCATGACTCCTTGTCATCTCTGACCCCAC
ATACTAGCCCCCTCCCCTCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021433TCONS_00021433Clytia hemisphaericatranscript
TCONS_00021434TCONS_00021434Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:44360..50229 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.88	68.5	48.66	49.95	4.26	3.34	8.19	7.97	14.65	10.11	13.99	15.23	10.62	10.72	15.53	12.9	8.86	10.73	18.19	16.16	10.22	10.49	26.48	25.14	1.03	1.47	8.66	6.75	13.07	13.82