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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021433 ID=TCONS_00021433|Name=TCONS_00021433|organism=Clytia hemisphaerica|type=transcript|length=1501bp
ATGAGAAGTGGAGTGGCAAGTGGAGTGGATGATGGAAATCCTGGATGATG
ATCAGTGACGGTGGAGTGATGGAGTGGTACCTTGTGGAGTTTTTTTGACA
GTTTGAAGAAAATACCCTTAACCACCAATATTTGAAGAAACTTTCAAACT
CTAACAGAATTACGCTCCTGCAATGTTTAAGTTCAAACACATGATGGATA
CTACAGACAAACAAATGGCTTAACAATGGGGGAGCTGGACATCATTATTA
GCCAACAGATTGACTTCACAAATACAACGAGTGAATCAGAGGTGAAGCTA
AAATCTATGCGTGCTATGGATTATATTGTTtgtgaaataaataaaagtga
aattgaaGAAGAACTTAGAAAAGATATGGATCAAGAGTATCAATAACTTG
CATGATAATTTGAAATTCACTTGTGAAAGAGTGCATAATTGTTCTATCCC
TTTTTTTAACATTcgttaacatttttaaaaatgaatttctaTTGTTAAAA
AGATGTAAATCATGTGCGCCATAGAATACATTAGAAAGTTACCGAGCTTT
ACATAAAATTGTTATAGTGTAGTTTAATTTAACATTTGTTTAACATTCTG
GAGGTCTATCtgatttatttttagaaatgttagcAAATGTTAACCAAAAA
TATATATGATTCTTATAGGGATTTCGAACTTCCTACCTACCTACCTTAGT
TCTTCTAATTTAAATTTAATCTTTAATCATGGTTCCAATCACTCCCATCA
TTCTGATTGTgtcatttttatgttttcagttgttttttgtcatgtttgtt
tatatttttcagttttgtcTGCATTTTACACAACTTTCTGCCATTTAGgg
tatttttcatttgtttggaTAGATTAATTTGAtcagtattttatttattt
atttcaatacCTAGTTTGCTTTTTTCactaatttatttcatttttacata
aattatatttattatttggtTTGTATTTTACACACCTTGCATAAAAAGAG
CTCAGCTCAGCCATTTGTTTATTCCGACAGAGACTACCAAGGATTCAACA
TCAAActtcaattttgaaacttaaTCTAATTTAGTCTCATGGTCTCACAC
TAATCATTTTGGACTCCACTTTTACACTTGGTGTTAGTCCACATACACCT
TCTGCTGCCTGCATACAGCCTTCACATTCAGGCCAGCTGGTgagtttttg
ttctttttgattTTGCATTTCTTTTTTAAGTTAAGTTAGCTtttcatttc
atatttttatagcATTCAATTTACTTTTTACACTCACATTAGAACTATGT
CATTGAACTTATAGAACTTTGTCATTCATATTTATACTTCCAAAATATCA
TTTCATTGgacttatttttatattttagtttGAACGCATATGCACATCAA
TCATGTTCAATAAATGAATACACTTGACAGTGGTTACAAACACGGCTACC
ACCCATGACTCCTTGTCATCTCTGACCCCACATACTAGCCCCCTCCCCTC
C Run BLAST on NCBI transcript from alignment at sc0000386:44360..50229+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021433 ID=TCONS_00021433|Name=TCONS_00021433|organism=Clytia hemisphaerica|type=transcript|length=5870bp|location=Sequence derived from alignment at sc0000386:44360..50229+ (Clytia hemisphaerica)
ATGAGAAGTGGAGTGGCAAGTGGAGTGGATGATGGAAATCCTGGATGATG
ATCAGTGACGGTGGAGTGATGGAGTGGTACCTTGTGGAGTTTTTTTGACA
GTTTGAAGTAAGTCTGAGGAACTTTTTCATGATTTCCTTGAAAGTATTTC
CTCTATGACTGACTTACTCAGAGGATGTTTCTATCATTTAAATTTACACT
ACAAAAATTTGAACCTCCCTTCAATAAAGCACAATCATAATAGTACGGTG
CAAACAAGCTGGCAAAcaagaaatttcaaacttactaATTTGACTATCAG
ACAATTCTTTATAGTTGGCTCAGAGATACCTTTTATGATCCTAGATCACC
TCCAACTTTTTCATAATTGGCAAGTTTCAAAATTCTGTTCTGTTCTGTTC
TGAATGCGGGACGTGAGCAAAACGAGTGCAAAATTGAGCTAggcattttc
aattttcaaaacgttttgGGGGCAGAGGGCCCCCttagaaaaacttttaa
cattgAATTGAtgtgaaaattaccaaaatccTGTCTAATCTAATGTTTCc
cttttttatcattataaaAATCGATCAATTTTTCGTGACTTTGAGCATAA
CTCTAATGAATATTTGGACAAACAGAGGATTTGGGCGTTCAGCCGGACAA
AACGTTAATTTGTGTACATATGTCACGCAGGATGCAGGACACTTGGTACC
TAACTATGCTTTTTTCACCACTTTTCACCTAAGGCggcaataaaaaatat
gttgCGTTCGGGTCGTCTGACCGactgtttatttacaagaaaacccGATT
CGTTTTTTTTGGGCGCTGTTTGCAGGTTTGCAGGATCTTtccttatctga
tattccaatGGTGTTTTGGCGGccacccacgctaaagctctgaaggagcg
ggccaatatcacatcggagacctatagtagtcatcgtttgaGGTACCGCA
TCACATTCGTGTCTAGCCGTCCTTACACTTTTTTCTTGACTATCGgttgc
acccgactgaatttagcatgaaaatctctgctgcctgagaaGTCCTGAGA
AACATTCAAACCTTCGATTGTTGGCtgtttttggtttattttggtagatt
tattgaaacttgacagtttcattactttttcagTATATATTATATTTAGT
ACCTATTGTAATTTCTTAGTAAGTGCACCAAGTTAAAAGTGCTTGACATT
GATTATTTGTATtattatattttgttatttatttgtttttggtgGTTGAC
TGGTTATATTTTTAAAGGCCAAATCAAAGAAAGCATATCAGGTatatttt
atttagttttacCAATAATTTTTATGCTGAAATTTTAAACTGCTGCATTC
CAATTTAGACCTTTTAGTTAGAGCCTGTCGACCGCCCTCCATGNTTTTAC
CAATAATTTTTATGCTGAAATTTTAAACTGCTGCATTCCAATTTAGACCT
TTAGTTAGAGCCTGTCGACCGCCCTCCATGCAGAACAGTGGACCGCCCAA
CCCCAACCGACATCAACAAACTTGTTGATCATGACCTGTGTGTTGTTTAT
TTGGAAAAGCCAGAACCCTCCTTCATCAATAACAAAGTTGGAGGGAGGTT
CCCATATATTGTATCAGTATCTTGGGGacaaagcttttattttttggtaA
CACAACCATCTTTGCATGTTTTGCCACCAATCAAACTCTATTTTTAGAGG
CTGACATGCATATTTCAGGTAGTGAAAGATCTAGTGCAGgtgtaattttc
atttggtGTGTTGAGGCAAGCTTAGTGATTCTGCAAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AtcgcttgtttacttttttaggCAGTGAAAGATCTTGAATAGGTGAAATT
GTCATTCGATGTGAGGAGACAAACTTATTTATTCTAGTAGCAGCAAAGAA
TTCACATTGTATTGCTATAAATTGAACTGTAATTGGGTTTGGGTTTAGAG
CCACTCTCAATAAGTTTTAGTTTGCCTcctgctttgtttacatttttcag
ttCAGAGCACTATGTAGAAATCAcacgggaaattttttttgcatgtgtAC
TCTTAGTTCGGGGCACTAGTAACTTTTTACCCTCCCCAGACtctttctaa
attttacgaACGCGGTCAGGAGGAATTCCGTAATgcaaaggttccagatg
ttaaaattttcccgttcttcagagctttagcgtgtcggaagaaatttcta
catcgagtaccagataagATCTTTCCCATAATGGTGGGCGGGCAAACGGA
GCATGTCTTTGAATCATTactttttgtttacttaacccacattgagtctc
TTTCAAGTTTNAGCTTTAGCGTGtcagaagaaaatttctacatcgagtac
cagataagATCTTTCCCATAATGGCGGGCGGGCAAACGGAGCATGTCTTT
GAATCATTactttttgtttacttaacccacattgagtctcGTTCAAGTTc
ttcatgtacccttattgaaattgtCATGTCAAATTCAGCAAAgcggtagg
gccaatacccTGGGGGCCAAAAATAAGGGCCGCTTTAAGGTTAACACATG
CGCGCGCACATTTAGTTCAAtggcaaattaaaaaaatatggtggcataag
attctgttgattaccgacttgattcatcgggatttactagatcttaaaaa
tccaacaaaatttactaccgaccaactgaccgactgaccgactggatttg
aaaaCATAACATAAAACATATATGAAacatatatttttgattgccgccta
attactttttaaagctgagatatttgactttgaagTGTTTAGAAATTAGT
CTTGAATGGAATCTCCTTTTTCCTGTTTCAAATTTGAATGATACGATGGC
TGTTTGATTTCCAAACTTGATCAAACAGCTATCAAACTTTATGAAAATTC
CTGGATTAAGTTGATTTAGTTTAATGTTAAGCTTGTCTggcacaaaaaaa
ttcaagtcaCATAATCTTACCTTTTAGCAACTTAGCCTTGCCTTGAACAA
CAAGTGGCATTGGCTCAAGAAGTGGGGGGGTATTTTGGACCATAATATAA
ATGCCGTATACAAGCTACATATAAAAAACTACCGTCCAATCGGCAAACAC
AAATCATAGGAGGTTAAAACAAAACACCGCCTCTAAACTCTGAATCTTTT
TGTCTAGTTGGTTGCTAAATGCTTATGACACTTTTAGATATATTTATAAA
CAATCAAAATTGTGTTTGCTATTTTGATGGTCTGATAATCACTTTCTTTA
GTATGTTTATTCATTACTATTATTGTTCTTTGGGTTTGGTCTGGTTAAAC
TTATAAGAGAAACTTTCCTGAGAGAAACCGCAAAATTTATTGACctaatt
attttccaaagctgaTATATTGCACTTTAAAAATTGCCAGGTCTCATCAT
GAGTTCACTGTTTTTAGCCTAGTGGCAGGAATTATGTTCTGAGAGTCCTG
TCATTTatttcaagtttgaaaaataattggGTCAAAAGATTATTAATGGT
TTTTACACGGCTATAGATTGAGTCTATAagccaaatataaaaaaactgtC
TGATTAGTTTTCCCATCAAAAGTGATTGCGGGGTGGTATGTCCTGCAAGG
TGGTAGCAGTGTTGTAACTTTTCCGTCCAGCTGAGATACAAATACGCTAT
TTCTGACCAaagattttttaacaaattccGTCCATAGTTACAAAACCTGG
TTGCAACACTGTGGTAGGGTAATTTCTCCAGAGTTAATTTGTATCCCTCT
TATTTCCTCATTGCACTGGACGCTGGAAAAAACCACAatctgaaaattat
attttctcaTTGTTTCAAATATATACTACCAGACCTATTAGGTCTTTATC
AAAActaatgaaactgattttttaaTCAGAAAATAACCATTGCGTTTTAA
AATCCATGGTTATAAAAGATATCACCTATCTTTCGAACAGGGCTTTGAGA
CAAAGATTTATAGGATGATTTGATTGCAGTATGCAAAGATGTGATTGCAG
TAGATGGATTTTGATGAGCCATACCATTGCAATTCCTTTGTTATTTAGAA
tgaattgcaatgcaatgtgCTCATTTATGCTCATATCTGAGCAGGCAATT
tgaaacaaaatgtaaacaatacAAATGATGTCATCCAGAAAACCATCTAT
ATATTTCAAACTGATTTGATCAACCTGTATCACTTAGTCAGACTTCAGAT
ATAATAGGCCAATAATTTTGTTTGGTTTACATTGTTTTCAATTGATtcaa
caatcaaaattttcttttatactCAGGAAAATACCCTTAACCACCAATAT
TTGAAGAAACTTTCAAACTCTAACAGAATTACGCTCCTGCAATGTTTAAG
TTCAAACACATGATGGATACTACAGACAAACAAATGGCTTAACAATGGGG
GAGCTGGACATCATTATTAGCCAACAGATTGACTTCACAAATACAACGAG
TGAATCAGAGGTGAAGCTAAAATCTATGCGTGCTATGGATTATATTGTTt
gtgaaataaataaaagtgaaattgaaGAAGAACTTAGAAAAGATATGGAT
CAAGAGTATCAATAACTTGCATGATAATTTGAAATTCACTTGTGAAAGAG
TGCATAATTGTTCTATCCCTTTTTTTAACATTcgttaacatttttaaaaa
tgaatttctaTTGTTAAAAAGATGTAAATCATGTGCGCCATAGAATACAT
TAGAAAGTTACCGAGCTTTACATAAAATTGTTATAGTGTAGTTTAATTTA
ACATTTGTTTAACATTCTGGAGGTCTATCtgatttatttttagaaatgtt
agcAAATGTTAACCAAAAATATATATGATTCTTATAGGGATTTCGAACTT
CCTACCTACCTACCTTAGTTCTTCTAATTTAAATTTAATCTTTAATCATG
GTTCCAATCACTCCCATCATTCTGATTGTgtcatttttatgttttcagtt
gttttttgtcatgtttgtttatatttttcagttttgtcTGCATTTTACAC
AACTTTCTGCCATTTAGggtatttttcatttgtttggaTAGATTAATTTG
AtcagtattttatttatttatttcaatacCTAGTTTGCTTTTTTCactaa
tttatttcatttttacataaattatatttattatttggtTTGTATTTTAC
ACACCTTGCATAAAAAGAGCTCAGCTCAGCCATTTGTTTATTCCGACAGA
GACTACCAAGGATTCAACATCAAActtcaattttgaaacttaaTCTAATT
TAGTCTCATGGTCTCACACTAATCATTTTGGACTCCACTTTTACACTTGG
TGTTAGTCCACATACACCTTCTGCTGCCTGCATACAGCCTTCACATTCAG
GCCAGCTGGTgagtttttgttctttttgattTTGCATTTCTTTTTTAAGT
TAAGTTAGCTtttcatttcatatttttatagcATTCAATTTACTTTTTAC
ACTCACATTAGAACTATGTCATTGAACTTATAGAACTTTGTCATTCATAT
TTATACTTCCAAAATATCATTTCATTGgacttatttttatattttagttt
GAACGCATATGCACATCAATCATGTTCAATAAATGAATACACTTGACAGT
GGTTACAAACACGGCTACCACCCATGACTCCTTGTCATCTCTGACCCCAC
ATACTAGCCCCCTCCCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021433-exon-sc0000386-1491911889:44360..44466 | TCONS_00021433-exon-sc0000386-1491911889:44360..44466 | Clytia hemisphaerica | exon |
| TCONS_00021433-exon-sc0000386-1510915933:44360..44466 | TCONS_00021433-exon-sc0000386-1510915933:44360..44466 | Clytia hemisphaerica | exon |
| TCONS_00021433-exon-sc0000386-1575043694:44360..44466 | TCONS_00021433-exon-sc0000386-1575043694:44360..44466 | Clytia hemisphaerica | exon |
| TCONS_00021433-exon-sc0000386-1491911889:48836..50229 | TCONS_00021433-exon-sc0000386-1491911889:48836..50229 | Clytia hemisphaerica | exon |
| TCONS_00021433-exon-sc0000386-1510915933:48836..50229 | TCONS_00021433-exon-sc0000386-1510915933:48836..50229 | Clytia hemisphaerica | exon |
| TCONS_00021433-exon-sc0000386-1575043694:48836..50229 | TCONS_00021433-exon-sc0000386-1575043694:48836..50229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:44360..50229 + |
Blast
The following BLAST results are available for this feature:
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