XLOC_012241 (gene) - C. hemisphaerica

Overview
NameXLOC_012241
Unique NameXLOC_012241
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000395:194756..199033+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012241 ID=XLOC_012241|Name=XLOC_012241|organism=Clytia hemisphaerica|type=gene|length=4278bp|location=Sequence derived from alignment at sc0000395:194756..199033+ (Clytia hemisphaerica)
TGATGAATGAACGTCTAAATAAGGCCTTGACGGCCCGACATCTTATAAAA
GGATCTTTCAGTACCCAATACCTTTGCCCCCCAAAAAAGAACCAACCGCT
GGGGCATTGAAGTTGCAGGCTTTTGTGGTGTCACtacacaaaaaattgaa
ttttctggTTTATTTTAAAGTAAATCCTGATAACTTTGTAATTTCCCTTC
CGTTTCAGAGACAAGTAGAAATTCACAGGAATCATAATTGTGCAGCTAAC
GAACGAAGacgaattgaaaaaatcaaaaatggcgAATACGTTCCTACTAG
CTACTTCAATAACAATAAACAAGTGAGAATTCCTTCGTATTCATTGTTTT
GTACTTTTGTGTTGTAAGGACCGTTTGAATAAGGGGCAAATAAGGTCTGG
ACGGCCAAAGAACTTATAGTATCAAAGGACACTTTCAGTATATCATTCCC
TTTTGCTGCCCGTTCCCGTTCAAGTAGACTGCCGCTGATCTCTTCCCGAC
GTTGACCTCGGAAAACTGAGAGGTTTCTGGAGGTTTCGTTTATCAAATTG
TGAAGAGCATGATATGCAGGAGAAAGTTTTGGGAAAAAACTTACCACTTT
TCCAATCTTTCACACTTTTACAACTTTCCTAACCAAAACTTTGTAAATGT
TTGTAAAAGTGGAGAATTTTCCATGGTTGCAACACGAaagctagcctgga
tatccagaccgtaaactatttcaccgtctagttttttataatcttgtctc
tggtttacggtctggtcgaagtaactcgtctgcagggNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtgcgcgcgcataatttatggaaaaagctgaccttgcaaaa
aaagataaacaaatgaaaaagaaaacacaagttcatttctaaacaaaatg
gccgctggaaaaaggagcctttatgaatgtggctgatGCTTTGATGTACT
TTAAagtggttttgaaagtttattgagttaaaagaggttttatggtaagt
aattatgtgtgtctgcctgggtttccaaagttttgagattctgtcaacaa
gggtttactcacagactgtgtcattcaaaactgtacccaacttttttagt
tgcaccagacttgcaattttagaaactttgtatgttgaggtaagagtttt
tttttctgaaattttgagtctggatacccaggctacaCGAAAGcacgaaa
tagaaaatatttgcttaattctttttaagtaaaagtgacctttgaaaaTC
GTAATTTATGCCCGCTATAATTTATTCTTtcatgaaatcgaaagtgaaag
ttctTTATTCAATTGCTATTGGAGGATGATACGCATAATTTTCAGCCGAG
TCTGGAATAATTATGACATCATAGATCCaattttcccaccaaaataccaa
aacttTGCATATGCAAATGATTGCTGTTGTTGGCTGGGAAAGTTTGGAAA
AGTCCTTTTTTTCACATCTTCACAACTTTCAAGGAACCTCTTTTGAGGTG
GGAAAAATAGTAAGATATTTTACAACTTTTATggtttttacaactttttt
agaCCAAAACTTTGACTTTTTGATGGGAAAAGTGGGAGAATTAGCAAATT
TATGTACCAAAACTTTCTCCTGTTGTTGATGGAAATAAGGACTCTTTGGG
GGAAGCGAACTGGTCAAGTTAGGGGTAAACAGTTTCGCGTGTTTGTTTTA
TATCGTGTAAGCAGTTAGAAAAATTTGGGACTAAAAAAGGTTGAAAGGAA
TCCTTTACTTTCGCATCGACTTCTTGAGGGATTACTAAAGGACTAGAAgg
tcttttttttactttaactAAAATTCCATTNGGATTACTAAAGGACTAGA
agggtcttttttttttactttaactAAAATTCCGAGTTATAGTTGACGCT
TTTAAATTCGATATTCCACTATTCAATACGCTCCCTGATGACAATCTAGT
TTGAAAATCGGAttggagagcgtcaactgtagatTCGACGGTTATTATTT
GAGGAATGGTTTGATCTTTGATTGtcaacattttttcttttagcACAAAA
CACCATCCGCTTACGACCGCCAGTTTCACATGGAAGAAGGATGTTATAGC
AGATTGAAAAGAGATGATCGGATGGCTAGTCTAGGTCTTGATATTAATGC
AGAGGTATAATTAGTTATTTTCTCTTAAGATTGGCAGCTGTTGTAGACCA
CCAAATATACCTCACGTTGGTTTTCCACATAACACGTAAACTCACGTTGG
TGAAAGCAAATTTGTTAAAGTTTTGGAGAGTTCTAGTCACTAAGGCGTGT
TCATCTATTGTTTGAGCGACAGCAAGAGACCTGCATTTAGTCGAAAGATT
TTACGGCATTAACTTGCGTGAGgcataaaaattaataaaatcaaaatttt
gaaacgaAACGAATTTCGTACTTTTCGCGATTTTTCAACCATGTTGAAAA
ACGACGCCCGGTTGACGCCCGCGATTAAACCACCTAATTGAAAAATGACG
CCCGCCACCATTCCCCTTGTTTAAGTTCCATGAAACTCGTGATACCCTGG
ATGACGCTAACATCCATTATGATCTAGTAACacacaatagcgagtttatg
tatgtgtgtctTTGTGTGACAGAGACTGTtagcttttgatttttctagac
TGAGGAAGACGGTAAATTAACACTTTTATTTTAACCGAAAAATTGCGGTT
TGTTCCTAATCGTTTCAGTCACATCGTTGTCcacaaaaatacataaactc
tAATGACATATTCCCTGATAAGGTagtgaaatgttttttgaatatttgtT
TTCTATAGAAGGTAACGTagcttttgaatgttttgttcttCATAGAACGA
GAATACGATCCAAGAAATAGACTTAGACTTGTCCTTGTACCGCTTCAAAG
TCAACAAAATTATGAACGCACCATCATCTAATACGGTGAGCAGATGGCTT
CACATTCTCTCATTAGATAATTCGTTTTGAAAGTTGGGtaaactacctta
tcgggggaaaTGTTCTGAGTTGAAATGACTACAATGTTTTCGGCCTTACA
AGTTCGTCCATGCTTACTTCTATTCTTGCTCGTTTTCCCCGGTAAGGTGA
ATTATCTTGATTAAATCACCGTCATCTTGTAGAAAAAACATTAGATAGAG
CTTCCTAATCTTTCCTCTACAGGAGTTAAGGAGCATAATAATAATCATGT
GTCATTCTTTTAATgaggcccccagcggaccttcaattcacgcaatcacg
caattctttttcgaaattaacgcattcacgcaaattcaCCAGTTTCACGT
GAATAACCCGATTTCACGctcaaaatagcccagatttttcacgtttttta
cgttcacgcaagttttttcaattcactcATTCACgctacttttttttcaa
ttttcacgtattcacgcaaccgagtatgcccattcacgcaatcacgtaaa
ccgctgggggcctttAATAGTGGACCTTATTGCATGCCGTTAGGCTTAAG
CAGACACAATCTAGAAATATAATCAGAGATGATGCAAGATTTCACTTCAC
TGAGATAGGGTGCTCTTTCTAGTGTTTCTATGAGAGACACATTGGTAGCT
CTGAGGGAGGGGAGGCGAGTGCATTTGAATCTTTACTTGACCGATCTGCC
TCTGACACAACTATATTTACTCAATTGTTGTACAGtttacgctctctaat
tcgattgtcaaagggaattggattttcatcgaaaaagggagcgtatcgaa
tagtaaaatgttgatgcTTACATACGCCTGACAATTTGACGCAGAGTCCA
TGTAGAGTGCTGACGCTGCCAATAGTAtattcaaaatgatttttttttct
tttcaggagAGTAACAAGTGTGTACCCATCCTCTCTTCTTCATCATATGG
TCATCGTGTACCCTTAGAAAAACCGGCACGCAAGAACTGTCGTGTCGCAC
TCGTGCAACGTGACTTTTATCGCGATTCAGGTACCAATATACCATCTAAC
GACCAATAAATAAACATTATATCAAATTTAAACATAACTATCCTGATTCT
TAGAAATATaacattattaaaaaaatat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021808TCONS_00021808Clytia hemisphaericatranscript
TCONS_00021809TCONS_00021809Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021808-proteinTCONS_00021808-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:194756..199033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72	0.58	0.5	0.58	0.6	0.56	4.25	6.06	12.42	7	11.93	11.71	9.02	9.9	21.51	22.81	3.1	2.29	1.62	1.11	0.38	0.28	0.55	0.66	450.85	197.29	0.33	0.29	3	1.21