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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021808 ID=TCONS_00021808|Name=TCONS_00021808|organism=Clytia hemisphaerica|type=transcript|length=745bp
TGATGAATGAACGTCTAAATAAGGCCTTGACGGCCCGACATCTTATAAAA
GGATCTTTCAGTACCCAATACCTTTGCCCCCCAAAAAAGAACCAACCGCT
GGGGCATTGAAGTTGCAGGCTTTTGTGGTGTCACtacacaaaaaattgaa
ttttctggTTTATTTTAAAGTAAATCCTGATAACTTTGTAATTTCCCTTC
CGTTTCAGAGACAAGTAGAAATTCACAGGAATCATAATTGTGCAGCTAAC
GAACGAAGacgaattgaaaaaatcaaaaatggcgAATACGTTCCTACTAG
CTACTTCAATAACAATAAACAAcACAAAACACCATCCGCTTACGACCGCC
AGTTTCACATGGAAGAAGGATGTTATAGCAGATTGAAAAGAGATGATCGG
ATGGCTAGTCTAGGTCTTGATATTAATGCAGAGAACGAGAATACGATCCA
AGAAATAGACTTAGACTTGTCCTTGTACCGCTTCAAAGTCAACAAAATTA
TGAACGCACCATCATCTAATACGgagAGTAACAAGTGTGTACCCATCCTC
TCTTCTTCATCATATGGTCATCGTGTACCCTTAGAAAAACCGGCACGCAA
GAACTGTCGTGTCGCACTCGTGCAACGTGACTTTTATCGCGATTCAGGTA
CCAATATACCATCTAACGACCAATAAATAAACATTATATCAAATTTAAAC
ATAACTATCCTGATTCTTAGAAATATaacattattaaaaaaatat Run BLAST on NCBI protein sequence of TCONS_00021808-protein >TCONS_00021808-protein ID=TCONS_00021808-protein|Name=TCONS_00021808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MEEGCYSRLKRDDRMASLGLDINAENENTIQEIDLDLSLYRFKVNKIMNA
PSSNTESNKCVPILSSSSYGHRVPLEKPARKNCRVALVQRDFYRDSGTNI
PSNDQ Run BLAST on NCBI transcript from alignment at sc0000395:194756..199033+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021808 ID=TCONS_00021808|Name=TCONS_00021808|organism=Clytia hemisphaerica|type=transcript|length=4278bp|location=Sequence derived from alignment at sc0000395:194756..199033+ (Clytia hemisphaerica)
TGATGAATGAACGTCTAAATAAGGCCTTGACGGCCCGACATCTTATAAAA
GGATCTTTCAGTACCCAATACCTTTGCCCCCCAAAAAAGAACCAACCGCT
GGGGCATTGAAGTTGCAGGCTTTTGTGGTGTCACtacacaaaaaattgaa
ttttctggTTTATTTTAAAGTAAATCCTGATAACTTTGTAATTTCCCTTC
CGTTTCAGAGACAAGTAGAAATTCACAGGAATCATAATTGTGCAGCTAAC
GAACGAAGacgaattgaaaaaatcaaaaatggcgAATACGTTCCTACTAG
CTACTTCAATAACAATAAACAAGTGAGAATTCCTTCGTATTCATTGTTTT
GTACTTTTGTGTTGTAAGGACCGTTTGAATAAGGGGCAAATAAGGTCTGG
ACGGCCAAAGAACTTATAGTATCAAAGGACACTTTCAGTATATCATTCCC
TTTTGCTGCCCGTTCCCGTTCAAGTAGACTGCCGCTGATCTCTTCCCGAC
GTTGACCTCGGAAAACTGAGAGGTTTCTGGAGGTTTCGTTTATCAAATTG
TGAAGAGCATGATATGCAGGAGAAAGTTTTGGGAAAAAACTTACCACTTT
TCCAATCTTTCACACTTTTACAACTTTCCTAACCAAAACTTTGTAAATGT
TTGTAAAAGTGGAGAATTTTCCATGGTTGCAACACGAaagctagcctgga
tatccagaccgtaaactatttcaccgtctagttttttataatcttgtctc
tggtttacggtctggtcgaagtaactcgtctgcagggNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtgcgcgcgcataatttatggaaaaagctgaccttgcaaaa
aaagataaacaaatgaaaaagaaaacacaagttcatttctaaacaaaatg
gccgctggaaaaaggagcctttatgaatgtggctgatGCTTTGATGTACT
TTAAagtggttttgaaagtttattgagttaaaagaggttttatggtaagt
aattatgtgtgtctgcctgggtttccaaagttttgagattctgtcaacaa
gggtttactcacagactgtgtcattcaaaactgtacccaacttttttagt
tgcaccagacttgcaattttagaaactttgtatgttgaggtaagagtttt
tttttctgaaattttgagtctggatacccaggctacaCGAAAGcacgaaa
tagaaaatatttgcttaattctttttaagtaaaagtgacctttgaaaaTC
GTAATTTATGCCCGCTATAATTTATTCTTtcatgaaatcgaaagtgaaag
ttctTTATTCAATTGCTATTGGAGGATGATACGCATAATTTTCAGCCGAG
TCTGGAATAATTATGACATCATAGATCCaattttcccaccaaaataccaa
aacttTGCATATGCAAATGATTGCTGTTGTTGGCTGGGAAAGTTTGGAAA
AGTCCTTTTTTTCACATCTTCACAACTTTCAAGGAACCTCTTTTGAGGTG
GGAAAAATAGTAAGATATTTTACAACTTTTATggtttttacaactttttt
agaCCAAAACTTTGACTTTTTGATGGGAAAAGTGGGAGAATTAGCAAATT
TATGTACCAAAACTTTCTCCTGTTGTTGATGGAAATAAGGACTCTTTGGG
GGAAGCGAACTGGTCAAGTTAGGGGTAAACAGTTTCGCGTGTTTGTTTTA
TATCGTGTAAGCAGTTAGAAAAATTTGGGACTAAAAAAGGTTGAAAGGAA
TCCTTTACTTTCGCATCGACTTCTTGAGGGATTACTAAAGGACTAGAAgg
tcttttttttactttaactAAAATTCCATTNGGATTACTAAAGGACTAGA
agggtcttttttttttactttaactAAAATTCCGAGTTATAGTTGACGCT
TTTAAATTCGATATTCCACTATTCAATACGCTCCCTGATGACAATCTAGT
TTGAAAATCGGAttggagagcgtcaactgtagatTCGACGGTTATTATTT
GAGGAATGGTTTGATCTTTGATTGtcaacattttttcttttagcACAAAA
CACCATCCGCTTACGACCGCCAGTTTCACATGGAAGAAGGATGTTATAGC
AGATTGAAAAGAGATGATCGGATGGCTAGTCTAGGTCTTGATATTAATGC
AGAGGTATAATTAGTTATTTTCTCTTAAGATTGGCAGCTGTTGTAGACCA
CCAAATATACCTCACGTTGGTTTTCCACATAACACGTAAACTCACGTTGG
TGAAAGCAAATTTGTTAAAGTTTTGGAGAGTTCTAGTCACTAAGGCGTGT
TCATCTATTGTTTGAGCGACAGCAAGAGACCTGCATTTAGTCGAAAGATT
TTACGGCATTAACTTGCGTGAGgcataaaaattaataaaatcaaaatttt
gaaacgaAACGAATTTCGTACTTTTCGCGATTTTTCAACCATGTTGAAAA
ACGACGCCCGGTTGACGCCCGCGATTAAACCACCTAATTGAAAAATGACG
CCCGCCACCATTCCCCTTGTTTAAGTTCCATGAAACTCGTGATACCCTGG
ATGACGCTAACATCCATTATGATCTAGTAACacacaatagcgagtttatg
tatgtgtgtctTTGTGTGACAGAGACTGTtagcttttgatttttctagac
TGAGGAAGACGGTAAATTAACACTTTTATTTTAACCGAAAAATTGCGGTT
TGTTCCTAATCGTTTCAGTCACATCGTTGTCcacaaaaatacataaactc
tAATGACATATTCCCTGATAAGGTagtgaaatgttttttgaatatttgtT
TTCTATAGAAGGTAACGTagcttttgaatgttttgttcttCATAGAACGA
GAATACGATCCAAGAAATAGACTTAGACTTGTCCTTGTACCGCTTCAAAG
TCAACAAAATTATGAACGCACCATCATCTAATACGGTGAGCAGATGGCTT
CACATTCTCTCATTAGATAATTCGTTTTGAAAGTTGGGtaaactacctta
tcgggggaaaTGTTCTGAGTTGAAATGACTACAATGTTTTCGGCCTTACA
AGTTCGTCCATGCTTACTTCTATTCTTGCTCGTTTTCCCCGGTAAGGTGA
ATTATCTTGATTAAATCACCGTCATCTTGTAGAAAAAACATTAGATAGAG
CTTCCTAATCTTTCCTCTACAGGAGTTAAGGAGCATAATAATAATCATGT
GTCATTCTTTTAATgaggcccccagcggaccttcaattcacgcaatcacg
caattctttttcgaaattaacgcattcacgcaaattcaCCAGTTTCACGT
GAATAACCCGATTTCACGctcaaaatagcccagatttttcacgtttttta
cgttcacgcaagttttttcaattcactcATTCACgctacttttttttcaa
ttttcacgtattcacgcaaccgagtatgcccattcacgcaatcacgtaaa
ccgctgggggcctttAATAGTGGACCTTATTGCATGCCGTTAGGCTTAAG
CAGACACAATCTAGAAATATAATCAGAGATGATGCAAGATTTCACTTCAC
TGAGATAGGGTGCTCTTTCTAGTGTTTCTATGAGAGACACATTGGTAGCT
CTGAGGGAGGGGAGGCGAGTGCATTTGAATCTTTACTTGACCGATCTGCC
TCTGACACAACTATATTTACTCAATTGTTGTACAGtttacgctctctaat
tcgattgtcaaagggaattggattttcatcgaaaaagggagcgtatcgaa
tagtaaaatgttgatgcTTACATACGCCTGACAATTTGACGCAGAGTCCA
TGTAGAGTGCTGACGCTGCCAATAGTAtattcaaaatgatttttttttct
tttcaggagAGTAACAAGTGTGTACCCATCCTCTCTTCTTCATCATATGG
TCATCGTGTACCCTTAGAAAAACCGGCACGCAAGAACTGTCGTGTCGCAC
TCGTGCAACGTGACTTTTATCGCGATTCAGGTACCAATATACCATCTAAC
GACCAATAAATAAACATTATATCAAATTTAAACATAACTATCCTGATTCT
TAGAAATATaacattattaaaaaaatat Coding sequence (CDS) from alignment at sc0000395:194756..199033+ >TCONS_00021808 ID=TCONS_00021808|Name=TCONS_00021808|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000395:194756..199033+ (Clytia hemisphaerica)
ATGGAAGAAGGATGTTATAGCAGATTGAAAAGAGATGATCGGATGGCTAG
TCTAGGTCTTGATATTAATGCAGAGAACGAGAATACGATCCAAGAAATAG
ACTTAGACTTGTCCTTGTACCGCTTCAAAGTCAACAAAATTATGAACGCA
CCATCATCTAATACGgagAGTAACAAGTGTGTACCCATCCTCTCTTCTTC
ATCATATGGTCATCGTGTACCCTTAGAAAAACCGGCACGCAAGAACTGTC
GTGTCGCACTCGTGCAACGTGACTTTTATCGCGATTCAGGTACCAATATA
CCATCTAACGACCAATAAATGGAAGAAGGATGTTATAGCAGATTGAAAAG
AGATGATCGGATGGCTAGTCTAGGTCTTGATATTAATGCAGAGAACGAGA
ATACGATCCAAGAAATAGACTTAGACTTGTCCTTGTACCGCTTCAAAGTC
AACAAAATTATGAACGCACCATCATCTAATACGgagAGTAACAAGTGTGT
ACCCATCCTCTCTTCTTCATCATATGGTCATCGTGTACCCTTAGAAAAAC
CGGCACGCAAGAACTGTCGTGTCGCACTCGTGCAACGTGACTTTTATCGC
GATTCAGGTACCAATATACCATCTAACGACCAATAAATGGAAGAAGGATG
TTATAGCAGATTGAAAAGAGATGATCGGATGGCTAGTCTAGGTCTTGATA
TTAATGCAGAGAACGAGAATACGATCCAAGAAATAGACTTAGACTTGTCC
TTGTACCGCTTCAAAGTCAACAAAATTATGAACGCACCATCATCTAATAC
GgagAGTAACAAGTGTGTACCCATCCTCTCTTCTTCATCATATGGTCATC
GTGTACCCTTAGAAAAACCGGCACGCAAGAACTGTCGTGTCGCACTCGTG
CAACGTGACTTTTATCGCGATTCAGGTACCAATATACCATCTAACGACCA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021808-exon-sc0000395-1491911889:194756..195077 | TCONS_00021808-exon-sc0000395-1491911889:194756..195077 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1510915933:194756..195077 | TCONS_00021808-exon-sc0000395-1510915933:194756..195077 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1575043694:194756..195077 | TCONS_00021808-exon-sc0000395-1575043694:194756..195077 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1491911889:196999..197109 | TCONS_00021808-exon-sc0000395-1491911889:196999..197109 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1510915933:196999..197109 | TCONS_00021808-exon-sc0000395-1510915933:196999..197109 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1575043694:196999..197109 | TCONS_00021808-exon-sc0000395-1575043694:196999..197109 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1491911889:197801..197890 | TCONS_00021808-exon-sc0000395-1491911889:197801..197890 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1510915933:197801..197890 | TCONS_00021808-exon-sc0000395-1510915933:197801..197890 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1575043694:197801..197890 | TCONS_00021808-exon-sc0000395-1575043694:197801..197890 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1491911889:198812..199033 | TCONS_00021808-exon-sc0000395-1491911889:198812..199033 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1510915933:198812..199033 | TCONS_00021808-exon-sc0000395-1510915933:198812..199033 | Clytia hemisphaerica | exon |
| TCONS_00021808-exon-sc0000395-1575043694:198812..199033 | TCONS_00021808-exon-sc0000395-1575043694:198812..199033 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:194756..199033 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027901 | DUF4541 |
Blast
The following BLAST results are available for this feature:
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