XLOC_012368 (gene) - C. hemisphaerica

Overview
NameXLOC_012368
Unique NameXLOC_012368
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000403:1921..6343+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012368 ID=XLOC_012368|Name=XLOC_012368|organism=Clytia hemisphaerica|type=gene|length=4423bp|location=Sequence derived from alignment at sc0000403:1921..6343+ (Clytia hemisphaerica)
ATGCTTTTCACTTTTATTTAACATTCTATATTCATTTTATCAGACCCTGT
TTTTATTAAGCAGGTAAATCGATAAAATACAATTAAATCTCATAACATAA
TTAAGATAGCTTCATTTCAATCCTATGATTAACTGTATGTCGCATACCCC
TCAAAATTTGATTACGGAAATAGGCTTGTGTGTTTTGTCCCAGATGGAAG
AATATCCGGTAAGCCTTCTGACCGTAAAGCAGAAGCATGATTACCACGGT
ATTGACCAGAAGTGTGATGTATTGTGAGATTTCTCTCTCGATTGGTTTTT
GAAAAGGAACGATGATGAAAGTAACCATAAAAAAGCGGTCAGTATAATAG
TGGTGTACACCTAAATGACGCCAATGCAAAGTGTTCCTTTATCATTATCG
ATTGAAAGTCGTTTTTCACAATGTGTGCATTTGTGATTGCCTACATCAGG
CATAAAATGGTTCTTTGTGCAAGGTTTACATGTTCAAGAGAATTAATTCG
GTTGAATGGGCCTCTCCTCGAAACCCAAGCTTCCGTCTTAAGCTGACAGA
AGCAAAACATTACCATAAATACTAATAACTATTAAATTAGCTTTCAAAAC
GTCATCTAATCGTCATTTATGCGTAAATACCCAAAAAAGGCGcgattttt
ttattcttaaacAGAATAAGTGAGCACTTATTCTCGATTTCACCTGATGT
TTTTGCGTCAATGAAGAATCGGAAAATGATTAACTCTTTAGATTGGTTTT
TTACCCCAACTTGATAGAAGCTGGAGGGAAGAAAGCTCCTTTCTGCATTA
TACATACTGTCTccaaaatatttcctttttccAGGCTTATCGATTGGAGC
CGCTGATTTACGATTATTATTCGGAAGTGCCGCCTGTTCGGGTATCGCAA
GTGGGTTGTAAAGACAACGAAACACCTTCCACTACCAAATCAACGGGGAG
CTGGCTGAGAGGTTTCTTCGCTAGTAAAACGAGCACTAGTAAAGCTGACG
TCATCGAATATAAAAAGGATGAGTCTGAAGTTGTAGAATTACCTAAACAT
GAAGTCGAAAAAACTGAAGAAGTCTTAAAAGACAAGAAAGGTTTGGACTT
TTTTCAACATATTGAGATTCCTGTTTATTTACTTTAACGAAAGGTTTGAT
taggattttattaaaaaacttaaTTAAGTTAAGGCCCCCAAACTCAACGG
AACCcacaaacaacatttttgctttTCTGTTTATATCTGTTTTATGTGTT
ATTTAAAGAGACCAGATTCGCCACATTTCTTTTTCTAGAGGTCTTATTAT
GGCATATATTATCTCCTTTGGTAAAACATTTCGTCAATAAGCAATTTTTT
CGCTAGTTGTAATTTTCTGCCAAAAGAATAGTTATTCCATTTCACAATCA
ATCTCATTTTTATCTTCTTGTTTCTTCCAGTTCTGGACAATCGACTAGAT
TACGTGTTAGAGCAATCGATGGTCGAATATTTCTCTNggacctaccccgg
tggaggtcctataaattaacctgtgttcgtccgttcgtccgtccgtccgt
ctgtttgttcgtctgttaccaacttttctcaggattgaatcataggaatc
ttttgatttttagtacAAAGTTgtaaaatggtggtggccaaaatgtgacg
gagcccgatttttgagaaaaaaaatatttgggccaaaaaacggctaaaaa
cgggttttttggactttgtgaaaaattggattactaattttttttgattt
tttgcatgaaagtagggtaccatcataggtaaaagatggctcaagcagaa
ttttgcaaaaaaattttgttggctcaaaacgcatgtttatctataagaat
tactattaataagcatacatcaatgttcttagtcaaattactcaattttt
ttatgagatagatgttttttttgctcacgagggcttacttttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGACAGGAAATTttagttgcttggcgtgttcttatagaaaaactgg
ccaaattcgatattttttataagcacattatcaattacttagatattagc
ttttctcgagattggcttttcATTATTAATGAtactttgcacaaagatgc
ataactataaaccttcgaatgtgacggagtccgattttcaaataaaaatg
ttattgggcaaatttgggccaaaaaacggctaaaaaacgggttttttgac
ttcgtgaaatattggatcattgtttttttctgattttttgcatgaaagta
gttagaagatggctcaagcagatttttgtaaaaaaagaatttttcggctc
aaaaaacgcatctttatctataagaatcactattaataagcatacatcaa
tgttcttagccgaattactcaattttttgatgagatagatggtTGTTTTT
GCTcgcaaagtcttgaatatgaaagaatatttcaagagcatgaaattttg
gtttctaaacgtttttttataagaaacaaacgactaatttaaaTAGATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtgttctgaatgattgtttaatggtcacgtcacgtagatatca
attataaatgtattaaatgcataaccaggtaggtccataaaagtatcact
tgttgtcTTCTTGTTTCTTCCAGTTCTGGACAATCGACTAGATTACGTGT
TAGAGCAATCGATGGTCGAATATTTCTCTGCTATCACTTCTCACCAGGCA
TATTGGCATAGCCTCGATCTGGCGAAATTCGTATTATACCACGTGTACGG
TATGGAGAACCAATCATCGACCAGTAACAGTCTGCCAACCATTGTCAGCT
CAACTGACCTCGACTGAGTGCGGAGTCGGTAGATCGATAAAAGGTTTAAT
TTATCAATCGTTAATATAAAGAGAAGGACATTTTTATTGGGCGACAGATG
TCTGTCgggaatagacgatatcgcgtttagataaatgcaatgcattctgg
tttctcggggaccctcaaggaaattataatctattccagatcattatata
atcaacattataattcctttgagagtccccgagaaaccagaatgcattgc
atttatctaaacgcgatatcgtctattcttcTCTTGTAATTTAGATTAAG
ATTTTTACGACAAAACTGGGTACGTAACCGTCTTCACATGGTAGCTTTAT
AGAGTGATCGTTCAactatttcaatttttaaacgtTGAAcatttttcacc
ttttgttCTCAGCCTTTTTCAAGGCGAAATTTTTGTATTTCGTAAATTTA
ATGTCCAAAATAANCGTATTATACCACGTGTACGGTATGGAGAACCAATC
ATCGACCAGTAACAGTCTGCCAACCATTGTCAGCTCAACTGACCTCGACT
GAGTGTGGAGTCGGGAGATCGATATAAGGTTTAATTTATCAATCGTTAAT
ATAAAGAGAAGGACATTTTTATTGGGCGACAGATGTCTGTCgggaataga
cgatatcgcgtttagataaatgcaatgcattctggtttctcggggaccct
caaggaaattataatctattccagatcattatataatcgacattataatt
cctttgagagtccccgagaaaccagaatgcattgcatttatctaaacgcg
atattCTTCTCTTGTAATTTAGATTAAGATTTTTACGACAAAACTGGGTA
CGTAACCGTCTTCACATGGTAGCTTTATAGAGTGATCGTTCAactatttc
aatttttaaacgtTGAAcatttttcaccttttgttCTCAGCCTTTTTCAA
GGCGAAATTTTTGTATTTCGTAAATTTAATGTCCAAAATAAGCGATGAAT
AAATTTGGGACAAACCTACGTTTTCCAGTAAGCACTCAGCCGTAAAGTCC
AACAATCACATAACATATCTTCAAACTTGGCTCTAATTCAAGGATACAAT
AACATATGTATAGCCATTTTGAGCCCTAATTTTGCGCTTTCAAGGAATCC
AGAATTCTTGTTTTCGTATGACATGTACCTATGTACAGCAGTTAATCTTA
TTAATTGATTAATTAATTCTTTATTtgggaattattttttttgcgcATGT
TTTACCTTGCTAGAAATTCAAAGCGCTGATGTTAATTAATTTAATGGAac
taaaaattagatttttataACGCATCTACGTAAATTTGTTCAGTTTTTTT
CGTATGTTTGAGAAGTTATAAATTTATGTGTACAGTATGaattttatgag
aaaaaaatttatcatggtaacta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022021TCONS_00022021Clytia hemisphaericatranscript
TCONS_00022022TCONS_00022022Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:1921..6343 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75	3.66	3.24	1.93	2.66	2.26	3.26	4.37	5.06	4.43	5.58	7.64	7.56	8.03	4.45	5.49	4.49	5.19	3.81	4.23	3.57	4.15	6.51	6.52	16.79	12.73	3.75	3.82	6.43	5.68