TCONS_00022021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022021
Unique NameTCONS_00022021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022021 ID=TCONS_00022021|Name=TCONS_00022021|organism=Clytia hemisphaerica|type=transcript|length=1146bp
ATGCTTTTCACTTTTATTTAACATTCTATATTCATTTTATCAGACCCTGT
TTTTATTAAGCAGGTAAATCGATAAAATACAATTAAATCTCATAACATAA
TTAAGATAGCTTCATTTCAATCCTATGATTAACTGTATGTCGCATACCCC
TCAAAATTTGATTACGGAAATAGGCTTGTGTGTTTTGTCCCAGATGGAAG
AATATCCGGTAAGCCTTCTGACCGTAAAGCAGAAGCATGATTACCACGGT
ATTGACCAGAAGTGTGATGTATTGTGAGATTTCTCTCTCGATTGGTTTTT
GAAAAGGAACGATGATGAAAGTAACCATAAAAAAGCGGTCAGTATAATAG
TGGTGTACACCTAAATGACGCCAATGCAAAGTGTTCCTTTATCATTATCG
ATTGAAAGTCGTTTTTCACAATGTGTGCATTTGTGATTGCCTACATCAGG
CATAAAATGGTTCTTTGTGCAAGGTTTACATGTTCAAGAGAATTAATTCG
GTTGAATGGGCCTCTCCTCGAAACCCAAGCTTCCGTCTTAAGCTGACAGA
AGCAAAACATTACCATAAATACTAATAACTATTAAATTAGCTTTCAAAAC
GTCATCTAATCGTCATTTATGCGTAAATACCCAAAAAAGGCGcgattttt
ttattcttaaacAGAATAAGTGAGCACTTATTCTCGATTTCACCTGATGT
TTTTGCGTCAATGAAGAATCGGAAAATGATTAACTCTTTAGATTGGTTTT
TTACCCCAACTTGATAGAAGCTGGAGGGAAGAAAGCTCCTTTCTGCATTA
TACATACTGTCTccaaaatatttcctttttccAGGCTTATCGATTGGAGC
CGCTGATTTACGATTATTATTCGGAAGTGCCGCCTGTTCGGGTATCGCAA
GTGGGTTGTAAAGACAACGAAACACCTTCCACTACCAAATCAACGGGGAG
CTGGCTGAGAGGTTTCTTCGCTAGTAAAACGAGCACTAGTAAAGCTGACG
TCATCGAATATAAAAAGGATGAGTCTGAAGTTGTAGAATTACCTAAACAT
GAAGTCGAAAAAACTGAAGAAGTCTTAAAAGACAAGAAAGTTCTGGACAA
TCGACTAGATTACGTGTTAGAGCAATCGATGGTCGAATATTTCTCT
Run BLAST on NCBI

transcript from alignment at sc0000403:1921..3406+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022021 ID=TCONS_00022021|Name=TCONS_00022021|organism=Clytia hemisphaerica|type=transcript|length=1486bp|location=Sequence derived from alignment at sc0000403:1921..3406+ (Clytia hemisphaerica)
ATGCTTTTCACTTTTATTTAACATTCTATATTCATTTTATCAGACCCTGT
TTTTATTAAGCAGGTAAATCGATAAAATACAATTAAATCTCATAACATAA
TTAAGATAGCTTCATTTCAATCCTATGATTAACTGTATGTCGCATACCCC
TCAAAATTTGATTACGGAAATAGGCTTGTGTGTTTTGTCCCAGATGGAAG
AATATCCGGTAAGCCTTCTGACCGTAAAGCAGAAGCATGATTACCACGGT
ATTGACCAGAAGTGTGATGTATTGTGAGATTTCTCTCTCGATTGGTTTTT
GAAAAGGAACGATGATGAAAGTAACCATAAAAAAGCGGTCAGTATAATAG
TGGTGTACACCTAAATGACGCCAATGCAAAGTGTTCCTTTATCATTATCG
ATTGAAAGTCGTTTTTCACAATGTGTGCATTTGTGATTGCCTACATCAGG
CATAAAATGGTTCTTTGTGCAAGGTTTACATGTTCAAGAGAATTAATTCG
GTTGAATGGGCCTCTCCTCGAAACCCAAGCTTCCGTCTTAAGCTGACAGA
AGCAAAACATTACCATAAATACTAATAACTATTAAATTAGCTTTCAAAAC
GTCATCTAATCGTCATTTATGCGTAAATACCCAAAAAAGGCGcgattttt
ttattcttaaacAGAATAAGTGAGCACTTATTCTCGATTTCACCTGATGT
TTTTGCGTCAATGAAGAATCGGAAAATGATTAACTCTTTAGATTGGTTTT
TTACCCCAACTTGATAGAAGCTGGAGGGAAGAAAGCTCCTTTCTGCATTA
TACATACTGTCTccaaaatatttcctttttccAGGCTTATCGATTGGAGC
CGCTGATTTACGATTATTATTCGGAAGTGCCGCCTGTTCGGGTATCGCAA
GTGGGTTGTAAAGACAACGAAACACCTTCCACTACCAAATCAACGGGGAG
CTGGCTGAGAGGTTTCTTCGCTAGTAAAACGAGCACTAGTAAAGCTGACG
TCATCGAATATAAAAAGGATGAGTCTGAAGTTGTAGAATTACCTAAACAT
GAAGTCGAAAAAACTGAAGAAGTCTTAAAAGACAAGAAAGGTTTGGACTT
TTTTCAACATATTGAGATTCCTGTTTATTTACTTTAACGAAAGGTTTGAT
taggattttattaaaaaacttaaTTAAGTTAAGGCCCCCAAACTCAACGG
AACCcacaaacaacatttttgctttTCTGTTTATATCTGTTTTATGTGTT
ATTTAAAGAGACCAGATTCGCCACATTTCTTTTTCTAGAGGTCTTATTAT
GGCATATATTATCTCCTTTGGTAAAACATTTCGTCAATAAGCAATTTTTT
CGCTAGTTGTAATTTTCTGCCAAAAGAATAGTTATTCCATTTCACAATCA
ATCTCATTTTTATCTTCTTGTTTCTTCCAGTTCTGGACAATCGACTAGAT
TACGTGTTAGAGCAATCGATGGTCGAATATTTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012368XLOC_012368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022021-exon-sc0000403-1491911889:1921..3010TCONS_00022021-exon-sc0000403-1491911889:1921..3010Clytia hemisphaericaexon
TCONS_00022021-exon-sc0000403-1510915933:1921..3010TCONS_00022021-exon-sc0000403-1510915933:1921..3010Clytia hemisphaericaexon
TCONS_00022021-exon-sc0000403-1575043694:1921..3010TCONS_00022021-exon-sc0000403-1575043694:1921..3010Clytia hemisphaericaexon
TCONS_00022021-exon-sc0000403-1491911889:3351..3406TCONS_00022021-exon-sc0000403-1491911889:3351..3406Clytia hemisphaericaexon
TCONS_00022021-exon-sc0000403-1510915933:3351..3406TCONS_00022021-exon-sc0000403-1510915933:3351..3406Clytia hemisphaericaexon
TCONS_00022021-exon-sc0000403-1575043694:3351..3406TCONS_00022021-exon-sc0000403-1575043694:3351..3406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:1921..3406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.44738	0	0	0.437414	0.11247	0.523796	1.20673	0	0	0	0	0	0.168096	0.0786462	0	0.334808	0.0268297	0	0	0	0	0.310209	0	3.21053	0.998103	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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