XLOC_012630 (gene) - C. hemisphaerica

Overview
NameXLOC_012630
Unique NameXLOC_012630
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000424:247860..254308+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012630 ID=XLOC_012630|Name=XLOC_012630|organism=Clytia hemisphaerica|type=gene|length=6449bp|location=Sequence derived from alignment at sc0000424:247860..254308+ (Clytia hemisphaerica)
TATATACCTCTTTCAAAAAAAGTAATTGTTTTGTATGAAACACTTATCTT
AATACATTTAACTGTCATCCTGACATTCTTTTCTAATGCTTTGTTTTAAA
TGGCTTTTTTCAGAGTTTATCTTACAACTTGGATTTTCTTTATTGGCAGT
CACCCGTGGCATCAGGATTTAGTAACACAAGTCTCATTTTGGACCTCTCA
CGTTGCAGTGGTGTCCAGGGTTGCGCTTACCAAGCGTATGATTTATAGCC
AAccatatatttttaaaagtattaATCATTGCATTGTGATTAAGAAAAGG
TTTTATAGATAAATAATTTCGAACAAGTTGCTAAAAGATTTCAGTTCTTT
GACAAAAATCTGCAATAATGTTCACCTGTTTTGTGTAGTCAAATTTCAAT
TTGAGCATATAGGATGCTTCAAATGTTGTTTGAAAACAAGTGGTAATAGA
ATATTGGCCCTTTTTGCCTATGCCAGAATAGTAAAGTATTGTTTTGGAGA
GTTTCTTAAAAAGGAAATTTAACAGTGACCAGTAATGAGAAAAGTTGAAT
GGTATTAGATAACATCAACTTTATCGAACTCTATTAACAGCCAAAGAAAA
ATACATGCGTCCCTTAATAATACACATATCAAATGAACACAAGGAGGCGT
CGAACGAAATCTGGAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGG
CTACGGAATACCTTTGACAAATAGTGGAAAAACATTTACAGAAACTTCAC
AAAATTACAATCAAGTGATTGTTGATCCTATTGATATGTCATGTCGTGAT
AGAACAGGAGAATTTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGGT
TTGATCATTTTTTCATATCAGTTTTTTGCTTGGCAATCATGAATAACTTT
AGCAAACCTATTCTGTTATATTTATCATCAAGCCCTTAGTGCTACCTTAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTTTAGGGGGTG
AGAGGGTCATGATTGACCAAAATCACATGTCAAAtttaagtcataacttt
tgaaatctaaatttttacctaTTGAGACTGATGTGGTTCAGAAACTAGAT
CGAAAAATGCGTTGAATGGTATATATTTCATTATTATatgctgaaatcaa
attttcacttttggtggtgacgtcatcatttgacaaattaccaccggaca
tgtccgttaaataaattttcggacgccgagtaaaatttttaggatcagta
gatatatggaaacaagaaaaatcaactcgacgtttgtcccaaagtcgtcc
agattttagatgtcgtcagctgcctgtctacaTATATGTTATTTGCCAAG
AACAAATCTCAGAAAAGTACATGAGGCGTCAAAATTAATAAAGGAGTGCA
AAAGTTAATGGGAttcattttattctttttttaaagcacTGGTAGAatct
atttttaattttatacaAATCTTTATTGTGTAAGTCTTCTTGCTTTCTGT
TTCTTAAATTAATTCCATTCGTTCTTGGCATTTTAGTTAAATGGTCATGC
TGGCAGGCATGGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTA
CAATGGCTTCACGAAAAATTGGAAGAGACATAAATAATACTTTTAATAAA
CTAGAAAAACTAGCAATATGTAAGTCTTCTTTATTAAAGCTTTTTCATTC
GTGAGAGCTCTGTAGAAAATTGACTCTAGTGTTCCTtaaagtggattaaa
tttcaagtggataaatttttgtaatttttaaactttgtccTTTTGTAAAA
GAAATTAAGTAAAAAGAGATTGATTTGCAAGTTTTTAATCCACTCAAAAG
CTTCAGACTCTCAATTCCATGTGAAAATTAATCTTAATTAagctttttaa
tattttgttttgattttcattttctagtGGCAAAACGAAAATCACTATTC
AACGACAAACCTAAAGAAATACAAGAATTGACTTATATTATAAAACAGGT
gctttcattttgtttgtttatccaATACAGAGTGTATATACAAGTTGTCT
CACACAACTGAGGCTTAAAAGTAGTAAATGTTCAAACTTTGGAATCTATT
GGTACCATGGTAAGTCTTTTGAGGTTTTTAGTGATTTTAACAATACTTTT
TGATTCATATTATAGGACATAAATCATTTAAACCAACAGATCAGTGATCT
GCAACAGGTAACGGACATTCGTTTTCAGATGTTTACTAAATTAATCTAAG
ACTTAATCAAACTAGTTCCCCTGGAGAGGGGGTCAATTGTCTAAGCCAAG
GTCACATAATCTAGTTTTAGTTATTTGATTCATCAGACATTGTTAGAATG
TAACATCTTAAAATATTTAGACCCCGTATCCAAATCCAACTGTTTCCGCA
CGTGATAAACCCTGATCAATCTGTTAAAGATTTAAATTCTTTcttcaaat
tgttcttttttacaGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAA
TGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCAAGTAAGTCTAA
ATTATTTCTCATTtgtttaaataaaaatagaactctgattttgaaattca
CTTTTTAAAATAATGCAAATGATTAGTTACTCTATAGGTGACCGAACACA
TACGTATGATTTTTTGACTGTATGCCTTTGACATGTGTTTTGGTGATTCG
AGAAACCTCTTGAAGAGTTCTGGACATTGATAATACATTGCAGTTGTTTT
TGGAGTCGTTTCTAAAATACTTAGTCTTCTCTAGttatatcattttcaaa
atttactttaTTGTTCACGAGGAATAGTCCCACAACAAAATGAAATCCTT
TGAAacctttttattatattttgttttctaGAGTAAATTGGCTTATATGT
CAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGGTATGTATATAG
GtggttttcttcctttttcaaaatctcaaaTTTGGACAACCTAATGATTC
CAGATGATTCCATTATACTCCTTAAAATGTGAAAGTATATGTCTCAAATA
ATATCATAGCTTTTTCTGTTACTAAATATTATTGTAATCTAATACAAAAT
TTTGTAGAATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAG
GAGCCGTCGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACTA
TTGCACAGAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTCT
GGACATGGAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAG
AGGATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAA
CAGACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGT
TAGTGAGCAAGAAGAACAAATCAAAAGGTACGTCAGAGAAGCAATATTCA
TTTTATCagtttgataattttttgataCTACGTTTTTTGTTATatgaaca
aagtatataagaacttTACgcttcaaaaccaaaaaaaattaagaacgttc
taagaacattataaggcttTGTTTATTCTGAAACATAGATTTCCTtaggc
aattttttcaaaaaatactctGAAAATGTCAACAATTTTTAGAACATTTA
TACTCTTAAAACCCAAGAAGTTAAGAACgcctaaaagtttgaaaaggttt
aaatgttctaataaaaaaatgtgtggTATATTTACTTCAAAGTATTTGTG
GGAGACAAAATGTTGCTCTTCTTTTCTAGTATTAAGCGGTTAAACATTGT
ATAcaggtttttaagattttggttgcttttccttcaaagaaaatCACTTT
GCCAACACGATTTATAAAAACTTTGTTTGGATCTGTCCATATTACAGTCG
GTGAGGAATAAAAATGTAAATTATtcttgttggacctaccccgatggagg
tcctataaattaaccgttgtatgtttgtctgttcgttcgttagttaccag
cttttctcgagattggctcattagtttttttcggactttttgcacaaaga
tgcataactataaaccctcgagtgtgacggagcccgattttagaaaaaaa
aaaatttgggcgaatttgggccaaaaaacggctaaaaaaaattggtccct
aaaagtatcacttgttttcacTATTTTCAGAATTGATGCAAATGTCGAGG
ATACAGAAATGAACGTGGAAGCAGCACACAGTGAACtactcaaatatttt
caaaacatctcATCAAACAGGTGGCttatcatcaaaatatttttcactct
CATCATCTTTTTTATCATCTTTGTTGTGTTTATGGCGTGAAAAAATCCTC
CTCTTTGTCTCGTATCAGCCCATAAAGCGTGAGGAGACTTGGCTAGGGTG
TATTCTTACTGAGAAGGATTGATGTCATTTATTTAAAGTCGTTACACTGA
TTTTCTTTTACAAAACACAGACGTTTTGACACCATTCCTTGCTTATAAAC
TTTAACCAGTCTCATCATGTTTTATTAAGGGATGATTTATgtattcttgt
aaaactgtttACGTTTCAAACTCTTGATCTTCGTCATTTCTccctttttt
gaattaaaagatGTTAGGATCTCAAATGTTACTACCctgaattttttaat
atttttaagaagaaaTTTTAACATTGGGAAAATCATTTAGATGTAGAATT
TATTCAGTTAGTGCTAATTATTCGAAGGAAATTTGCAGGATGGTGTTGTA
ATTCTTTTTTAGCTTCAACTCTTATTTTACATCTTTCTAAACTAATAAAT
CCAGCAAAAAATCCACAGTGTGATCTTATTTAAGATCCTAAATAATCTAC
ACTGCAAAGAAGCACACGCGAAATTTTAAATTATACGtattatttttgtt
catttttattttgcaaTTATGATTATGtttctttaaaatcttttatgAAA
CGAGGAAAAATGACAGGAAGGAGAACGTGGTTATTAAATATTTTAATCCA
CACCTTTAGTGGGTAaggattttatttatttcattttatatgATGATGTT
TTTAACTGAGAGGATGGCTGAaggatttaaaggttttattttcacataag
tgtttccgtttcatatcaggacagtgtcttgcttttgttatattatgttg
atgtaagaaaaaaaaaatttttcttttcctctttctgaccaatcttgctc
gacatccgtgtcaatccaatgtgaaaaccatgtaaattaaaattgatgag
taagcaaacgttatcactcttatttaaaaacaaaacctttaattcttATG
ATGTTATCATTCTcttaattaaaagaaaaattgccaATTAactaataaaa
ttgaaattacacAAGCTTTACAATCGTAGCAATCGCACTGTACAATTTTC
TGTATTACTTTGTGACTGTACAATTTCGTTTTCGTTTCAAATCATTCTAG
TTGCATGTATGGAGGTCATTTATAAGCTTTTCCACTTAATATTGCACTTT
GAAATTTGAACTCTAATGGCATTATCTTTATAATGACCATCATAAAATCC
GTTTCGAAAACCTGTGTCAGTTTTCATACAAAACAACCTATTGACAGAAT
TTTGTATATACTATGTCAAATTTATTGTGTCAAATTGTAGTGAAATATTG
CATATTTGAGACATGATTTGACCTCTTTTGAAagagaaattgtttgaata
gTAGATAAATTCTATGTTCATAACACCAGCTTTCAGCCAGCCTCTTTTAA
TTTATATGAAATGATATAGataatgttattattattactattattatttt
ttggttggttgtcaatttatataaaaataaatgaatggataacaatatat
tttttgattttgaaatttcaattttgatccaTAAAATCTTTTATTACATA
CCTCTCATCTCAGATAGGAATGCTTATCTATGAGctaaactgatttttg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022528TCONS_00022528Clytia hemisphaericatranscript
TCONS_00022529TCONS_00022529Clytia hemisphaericatranscript
TCONS_00022530TCONS_00022530Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022530-proteinTCONS_00022530-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:247860..254308 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
STX5syntaxin-5 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.59	29.08	16.09	14.55	43.66	30.88	58.32	61.28	45.5	40.71	53.49	68.99	54.59	62.46	43.91	39.58	30.85	39.96	44.64	37.92	37.69	35.95	41.71	43.28	42.28	45.34	32.62	29.93	39.45	35.76