TCONS_00022528 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022528
Unique Name	TCONS_00022528
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2746

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000424:247860..254308+

transcript sequence

>TCONS_00022528 ID=TCONS_00022528|Name=TCONS_00022528|organism=Clytia hemisphaerica|type=transcript|length=2746bp
TATATACCTCTTTCAAAAAAACCAAAGAAAAATACATGCGTCCCTTAATA
ATACACATATCAAATGAACACAAGGAGGCGTCGAACGAAATCTGGAAGCA
AAGAGGACAACAAGGAAAATTTCAATGCAGGCTACGGAATACCTTTGACA
AATAGTGGAAAAACATTTACAGAAACTTCACAAAATTACAATCAAGTGAT
TGTTGATCCTATTGATATGTCATGTCGTGATAGAACAGGAGAATTTTTAT
CTGCAGTCAAATCTTTGCAATCAAGTCAGTTAAATGGTCATGCTGGCAGG
CATGGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGGC
TTCACGAAAAATTGGAAGAGACATAAATAATACTTTTAATAAACTAGAAA
AACTAGCAATATtGGCAAAACGAAAATCACTATTCAACGACAAACCTAAA
GAAATACAAGAATTGACTTATATTATAAAACAGGACATAAATCATTTAAA
CCAACAGATCAGTGATCTGCAACAGTTTGTAAATAGAAGTGATTCCGGGA
ACAGTAAAAATGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCAA
AGTAAATTGGCTTATATGTCAAAAGACTTTAAACATGTCCTTGAAGTAAG
GACAGAGAATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAG
GAGCCGTCGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACTA
TTGCACAGAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTCT
GGACATGGAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAG
AGGATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAA
CAGACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGT
TAGTGAGCAAGAAGAACAAATCAAAAGAATTGATGCAAATGTCGAGGATA
CAGAAATGAACGTGGAAGCAGCACACAGTGAACtactcaaatattttcaa
aacatctcATCAAACAGGTGGCttatcatcaaaatatttttcactctCAT
CATCTTTTTTATCATCTTTGTTGTGTTTATGGCGTGAAAAAATCCTCCTC
TTTGTCTCGTATCAGCCCATAAAGCGTGAGGAGACTTGGCTAGGGTGTAT
TCTTACTGAGAAGGATTGATGTCATTTATTTAAAGTCGTTACACTGATTT
TCTTTTACAAAACACAGACGTTTTGACACCATTCCTTGCTTATAAACTTT
AACCAGTCTCATCATGTTTTATTAAGGGATGATTTATgtattcttgtaaa
actgtttACGTTTCAAACTCTTGATCTTCGTCATTTCTcccttttttgaa
ttaaaagatGTTAGGATCTCAAATGTTACTACCctgaattttttaatatt
tttaagaagaaaTTTTAACATTGGGAAAATCATTTAGATGTAGAATTTAT
TCAGTTAGTGCTAATTATTCGAAGGAAATTTGCAGGATGGTGTTGTAATT
CTTTTTTAGCTTCAACTCTTATTTTACATCTTTCTAAACTAATAAATCCA
GCAAAAAATCCACAGTGTGATCTTATTTAAGATCCTAAATAATCTACACT
GCAAAGAAGCACACGCGAAATTTTAAATTATACGtattatttttgttcat
ttttattttgcaaTTATGATTATGtttctttaaaatcttttatgAAACGA
GGAAAAATGACAGGAAGGAGAACGTGGTTATTAAATATTTTAATCCACAC
CTTTAGTGGGTAaggattttatttatttcattttatatgATGATGTTTTT
AACTGAGAGGATGGCTGAaggatttaaaggttttattttcacataagtgt
ttccgtttcatatcaggacagtgtcttgcttttgttatattatgttgatg
taagaaaaaaaaaatttttcttttcctctttctgaccaatcttgctcgac
atccgtgtcaatccaatgtgaaaaccatgtaaattaaaattgatgagtaa
gcaaacgttatcactcttatttaaaaacaaaacctttaattcttATGATG
TTATCATTCTcttaattaaaagaaaaattgccaATTAactaataaaattg
aaattacacAAGCTTTACAATCGTAGCAATCGCACTGTACAATTTTCTGT
ATTACTTTGTGACTGTACAATTTCGTTTTCGTTTCAAATCATTCTAGTTG
CATGTATGGAGGTCATTTATAAGCTTTTCCACTTAATATTGCACTTTGAA
ATTTGAACTCTAATGGCATTATCTTTATAATGACCATCATAAAATCCGTT
TCGAAAACCTGTGTCAGTTTTCATACAAAACAACCTATTGACAGAATTTT
GTATATACTATGTCAAATTTATTGTGTCAAATTGTAGTGAAATATTGCAT
ATTTGAGACATGATTTGACCTCTTTTGAAagagaaattgtttgaatagTA
GATAAATTCTATGTTCATAACACCAGCTTTCAGCCAGCCTCTTTTAATTT
ATATGAAATGATATAGataatgttattattattactattattattttttg
gttggttgtcaatttatataaaaataaatgaatggataacaatatatttt
ttgattttgaaatttcaattttgatccaTAAAATCTTTTATTACATACCT
CTCATCTCAGATAGGAATGCTTATCTATGAGctaaactgatttttg

Run BLAST on NCBI

transcript from alignment at sc0000424:247860..254308+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022528 ID=TCONS_00022528|Name=TCONS_00022528|organism=Clytia hemisphaerica|type=transcript|length=6449bp|location=Sequence derived from alignment at sc0000424:247860..254308+ (Clytia hemisphaerica)
TATATACCTCTTTCAAAAAAAGTAATTGTTTTGTATGAAACACTTATCTT
AATACATTTAACTGTCATCCTGACATTCTTTTCTAATGCTTTGTTTTAAA
TGGCTTTTTTCAGAGTTTATCTTACAACTTGGATTTTCTTTATTGGCAGT
CACCCGTGGCATCAGGATTTAGTAACACAAGTCTCATTTTGGACCTCTCA
CGTTGCAGTGGTGTCCAGGGTTGCGCTTACCAAGCGTATGATTTATAGCC
AAccatatatttttaaaagtattaATCATTGCATTGTGATTAAGAAAAGG
TTTTATAGATAAATAATTTCGAACAAGTTGCTAAAAGATTTCAGTTCTTT
GACAAAAATCTGCAATAATGTTCACCTGTTTTGTGTAGTCAAATTTCAAT
TTGAGCATATAGGATGCTTCAAATGTTGTTTGAAAACAAGTGGTAATAGA
ATATTGGCCCTTTTTGCCTATGCCAGAATAGTAAAGTATTGTTTTGGAGA
GTTTCTTAAAAAGGAAATTTAACAGTGACCAGTAATGAGAAAAGTTGAAT
GGTATTAGATAACATCAACTTTATCGAACTCTATTAACAGCCAAAGAAAA
ATACATGCGTCCCTTAATAATACACATATCAAATGAACACAAGGAGGCGT
CGAACGAAATCTGGAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGG
CTACGGAATACCTTTGACAAATAGTGGAAAAACATTTACAGAAACTTCAC
AAAATTACAATCAAGTGATTGTTGATCCTATTGATATGTCATGTCGTGAT
AGAACAGGAGAATTTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGGT
TTGATCATTTTTTCATATCAGTTTTTTGCTTGGCAATCATGAATAACTTT
AGCAAACCTATTCTGTTATATTTATCATCAAGCCCTTAGTGCTACCTTAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTTTAGGGGGTG
AGAGGGTCATGATTGACCAAAATCACATGTCAAAtttaagtcataacttt
tgaaatctaaatttttacctaTTGAGACTGATGTGGTTCAGAAACTAGAT
CGAAAAATGCGTTGAATGGTATATATTTCATTATTATatgctgaaatcaa
attttcacttttggtggtgacgtcatcatttgacaaattaccaccggaca
tgtccgttaaataaattttcggacgccgagtaaaatttttaggatcagta
gatatatggaaacaagaaaaatcaactcgacgtttgtcccaaagtcgtcc
agattttagatgtcgtcagctgcctgtctacaTATATGTTATTTGCCAAG
AACAAATCTCAGAAAAGTACATGAGGCGTCAAAATTAATAAAGGAGTGCA
AAAGTTAATGGGAttcattttattctttttttaaagcacTGGTAGAatct
atttttaattttatacaAATCTTTATTGTGTAAGTCTTCTTGCTTTCTGT
TTCTTAAATTAATTCCATTCGTTCTTGGCATTTTAGTTAAATGGTCATGC
TGGCAGGCATGGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTA
CAATGGCTTCACGAAAAATTGGAAGAGACATAAATAATACTTTTAATAAA
CTAGAAAAACTAGCAATATGTAAGTCTTCTTTATTAAAGCTTTTTCATTC
GTGAGAGCTCTGTAGAAAATTGACTCTAGTGTTCCTtaaagtggattaaa
tttcaagtggataaatttttgtaatttttaaactttgtccTTTTGTAAAA
GAAATTAAGTAAAAAGAGATTGATTTGCAAGTTTTTAATCCACTCAAAAG
CTTCAGACTCTCAATTCCATGTGAAAATTAATCTTAATTAagctttttaa
tattttgttttgattttcattttctagtGGCAAAACGAAAATCACTATTC
AACGACAAACCTAAAGAAATACAAGAATTGACTTATATTATAAAACAGGT
gctttcattttgtttgtttatccaATACAGAGTGTATATACAAGTTGTCT
CACACAACTGAGGCTTAAAAGTAGTAAATGTTCAAACTTTGGAATCTATT
GGTACCATGGTAAGTCTTTTGAGGTTTTTAGTGATTTTAACAATACTTTT
TGATTCATATTATAGGACATAAATCATTTAAACCAACAGATCAGTGATCT
GCAACAGGTAACGGACATTCGTTTTCAGATGTTTACTAAATTAATCTAAG
ACTTAATCAAACTAGTTCCCCTGGAGAGGGGGTCAATTGTCTAAGCCAAG
GTCACATAATCTAGTTTTAGTTATTTGATTCATCAGACATTGTTAGAATG
TAACATCTTAAAATATTTAGACCCCGTATCCAAATCCAACTGTTTCCGCA
CGTGATAAACCCTGATCAATCTGTTAAAGATTTAAATTCTTTcttcaaat
tgttcttttttacaGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAA
TGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCAAGTAAGTCTAA
ATTATTTCTCATTtgtttaaataaaaatagaactctgattttgaaattca
CTTTTTAAAATAATGCAAATGATTAGTTACTCTATAGGTGACCGAACACA
TACGTATGATTTTTTGACTGTATGCCTTTGACATGTGTTTTGGTGATTCG
AGAAACCTCTTGAAGAGTTCTGGACATTGATAATACATTGCAGTTGTTTT
TGGAGTCGTTTCTAAAATACTTAGTCTTCTCTAGttatatcattttcaaa
atttactttaTTGTTCACGAGGAATAGTCCCACAACAAAATGAAATCCTT
TGAAacctttttattatattttgttttctaGAGTAAATTGGCTTATATGT
CAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGGTATGTATATAG
GtggttttcttcctttttcaaaatctcaaaTTTGGACAACCTAATGATTC
CAGATGATTCCATTATACTCCTTAAAATGTGAAAGTATATGTCTCAAATA
ATATCATAGCTTTTTCTGTTACTAAATATTATTGTAATCTAATACAAAAT
TTTGTAGAATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAG
GAGCCGTCGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACTA
TTGCACAGAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTCT
GGACATGGAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAG
AGGATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAA
CAGACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGT
TAGTGAGCAAGAAGAACAAATCAAAAGGTACGTCAGAGAAGCAATATTCA
TTTTATCagtttgataattttttgataCTACGTTTTTTGTTATatgaaca
aagtatataagaacttTACgcttcaaaaccaaaaaaaattaagaacgttc
taagaacattataaggcttTGTTTATTCTGAAACATAGATTTCCTtaggc
aattttttcaaaaaatactctGAAAATGTCAACAATTTTTAGAACATTTA
TACTCTTAAAACCCAAGAAGTTAAGAACgcctaaaagtttgaaaaggttt
aaatgttctaataaaaaaatgtgtggTATATTTACTTCAAAGTATTTGTG
GGAGACAAAATGTTGCTCTTCTTTTCTAGTATTAAGCGGTTAAACATTGT
ATAcaggtttttaagattttggttgcttttccttcaaagaaaatCACTTT
GCCAACACGATTTATAAAAACTTTGTTTGGATCTGTCCATATTACAGTCG
GTGAGGAATAAAAATGTAAATTATtcttgttggacctaccccgatggagg
tcctataaattaaccgttgtatgtttgtctgttcgttcgttagttaccag
cttttctcgagattggctcattagtttttttcggactttttgcacaaaga
tgcataactataaaccctcgagtgtgacggagcccgattttagaaaaaaa
aaaatttgggcgaatttgggccaaaaaacggctaaaaaaaattggtccct
aaaagtatcacttgttttcacTATTTTCAGAATTGATGCAAATGTCGAGG
ATACAGAAATGAACGTGGAAGCAGCACACAGTGAACtactcaaatatttt
caaaacatctcATCAAACAGGTGGCttatcatcaaaatatttttcactct
CATCATCTTTTTTATCATCTTTGTTGTGTTTATGGCGTGAAAAAATCCTC
CTCTTTGTCTCGTATCAGCCCATAAAGCGTGAGGAGACTTGGCTAGGGTG
TATTCTTACTGAGAAGGATTGATGTCATTTATTTAAAGTCGTTACACTGA
TTTTCTTTTACAAAACACAGACGTTTTGACACCATTCCTTGCTTATAAAC
TTTAACCAGTCTCATCATGTTTTATTAAGGGATGATTTATgtattcttgt
aaaactgtttACGTTTCAAACTCTTGATCTTCGTCATTTCTccctttttt
gaattaaaagatGTTAGGATCTCAAATGTTACTACCctgaattttttaat
atttttaagaagaaaTTTTAACATTGGGAAAATCATTTAGATGTAGAATT
TATTCAGTTAGTGCTAATTATTCGAAGGAAATTTGCAGGATGGTGTTGTA
ATTCTTTTTTAGCTTCAACTCTTATTTTACATCTTTCTAAACTAATAAAT
CCAGCAAAAAATCCACAGTGTGATCTTATTTAAGATCCTAAATAATCTAC
ACTGCAAAGAAGCACACGCGAAATTTTAAATTATACGtattatttttgtt
catttttattttgcaaTTATGATTATGtttctttaaaatcttttatgAAA
CGAGGAAAAATGACAGGAAGGAGAACGTGGTTATTAAATATTTTAATCCA
CACCTTTAGTGGGTAaggattttatttatttcattttatatgATGATGTT
TTTAACTGAGAGGATGGCTGAaggatttaaaggttttattttcacataag
tgtttccgtttcatatcaggacagtgtcttgcttttgttatattatgttg
atgtaagaaaaaaaaaatttttcttttcctctttctgaccaatcttgctc
gacatccgtgtcaatccaatgtgaaaaccatgtaaattaaaattgatgag
taagcaaacgttatcactcttatttaaaaacaaaacctttaattcttATG
ATGTTATCATTCTcttaattaaaagaaaaattgccaATTAactaataaaa
ttgaaattacacAAGCTTTACAATCGTAGCAATCGCACTGTACAATTTTC
TGTATTACTTTGTGACTGTACAATTTCGTTTTCGTTTCAAATCATTCTAG
TTGCATGTATGGAGGTCATTTATAAGCTTTTCCACTTAATATTGCACTTT
GAAATTTGAACTCTAATGGCATTATCTTTATAATGACCATCATAAAATCC
GTTTCGAAAACCTGTGTCAGTTTTCATACAAAACAACCTATTGACAGAAT
TTTGTATATACTATGTCAAATTTATTGTGTCAAATTGTAGTGAAATATTG
CATATTTGAGACATGATTTGACCTCTTTTGAAagagaaattgtttgaata
gTAGATAAATTCTATGTTCATAACACCAGCTTTCAGCCAGCCTCTTTTAA
TTTATATGAAATGATATAGataatgttattattattactattattatttt
ttggttggttgtcaatttatataaaaataaatgaatggataacaatatat
tttttgattttgaaatttcaattttgatccaTAAAATCTTTTATTACATA
CCTCTCATCTCAGATAGGAATGCTTATCTATGAGctaaactgatttttg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012630	XLOC_012630	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000424	supercontig	sc0000424:247860..254308 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	4.9789	0.0298204	6.56794e-06	1.96644	9.57464e-06	4.60914e-07	2.4263e-10	5.88223e-06	9.38264e-10	2.57892e-08	6.80407e-08	6.16574e-06	5.61964e-10	0.00152363	0	0	0	0	0	4.96664e-07	0	0

Blast

[Close]

BLAST of TCONS_00022528 vs. Swiss-Prot (Human)
Match: STX5 (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 5.969e-93
Identity = 163/287 (56.79%), Postives = 207/287 (72.13%), Query Frame = 1

Query:  217 MSCRDRTGEFLSAVKSLQSSQLXXXXXXXXXXXXKKVQPSPFTMASRKIGRDINNTFNKLEKLAILAKRKSLFNDKPKEIQELTYIIKQDINHLNQQISDLQQFVNRSDSGNSKNVQAHSHTVVMSLQSKLAYMSKDFKHVLEVRTENMKHQKNRRDQFSQGAVAETLPSTQVASNSLLHRNV--GGNSSQSDTVSLDMEPLLASNNQAQLYEEDDEYVKSRATAMESIEQTIVELGGIFQQLAHLVSEQEEQIKRIDANVEDTEMNVEAAHSELLKYFQNISSNRW 1071
            MSCRDRT EFLSA KSLQ+ Q      +      +  Q S FT+ +++IG+D++NTF KLEKL ILAKRKSLF+DK  EI+ELTYIIKQDIN LN+QI+ LQ FV    S + +++Q HS+T+V+SLQSKLA MS DFK VLEVRTEN+K Q++RR+QFS+  V+  LP   +A N L    V  G  S  S  V++DM     S  Q QL +E D Y++SRA  M++IE TIVELG IFQQLAH+V EQEE I+RID NV   +++VEAAHSE+LKYFQ+++SNRW
Sbjct:   55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVR--QRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVS-ALP---LAPNHLGGGAVVLGAESHASKDVAIDMMDSRTS-QQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334

The following BLAST results are available for this feature:

BLAST of TCONS_00022528 vs. Swiss-Prot (Human)

BLAST of TCONS_00022528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STX5	5.969e-93	56.79	Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2	[more]

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TCONS_00022528 (transcript) - C. hemisphaerica