XLOC_015485 (gene) - C. hemisphaerica

Overview
NameXLOC_015485
Unique NameXLOC_015485
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000630:36713..47206+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015485 ID=XLOC_015485|Name=XLOC_015485|organism=Clytia hemisphaerica|type=gene|length=10494bp|location=Sequence derived from alignment at sc0000630:36713..47206+ (Clytia hemisphaerica)
CATTTTATAGACCAACCTCAACCatcattattcaaaataatGATTACTTA
CATCTATTTATTTAGTAGTAGATCCATAAAATTATACTAAATTAAAAGGT
TTGAAAGAATATTGCAATGATGCCGTCGTTATCAGACTTGAAGAATCTCT
TTCCGACGAAGCTGCATGCCATCATATTTGTTGGTTACATGGCTCTCTTC
ATTAATCAAGGTatctatttattttgaattaatttgtAGTCTGCTGAGGG
GACTACAAAATGCAAGTAGCACTGTTTAGCTTGAATACAACAGAATACAA
TGATattcaaattaaaaagtaataaagccaaaaaatgctatattttcgTT
GATTATTTTAGATACAAAAAAATAAGCATGCATATTATGGTCTGTATACG
AAAATGAGTACTAATAAAGgaatttgttaatttttatttaacgtaaaaaa
ggaaaaagtgaCAACTTTTCCTCATTAATGCCCCCTCCCTTGAAAACTTC
CTTTTTGGAATGGGCAGCTGCAAAACTTGACGCACTTGATAAAAGCCCAT
TGTCATTCAAGGAGAATTTGTACAATTGagcttttggacctaccccggtg
gggtggaggtcctataaattcacctctgtccgtccgtccgttcgttacca
gattttctcgagattgaatcataggaatcatttgatttttggtacaaagg
tgcaaaacggtggtggccaaaatgtgaccgagcccgattttcgaaaaaaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNggtaaaagatggctcaagcagatttttgcaaaaaaatttatt
tggcttaaaaaacgcatgtttatctataagaatcactattaataagcatg
catcaatgttcttagtcaaattactcaatttgNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNcttaaaaaacgcatgtttatctataagaa
tcactattaataagcatacatcaatgttcttagtcaaattactcaatttc
tttatgagatagaagtttttttttgcttatgagggcttacttttgaagaa
tatgcgtgtttagacatgaaatgTTGGTTGCTTGGCGTGCTTTTATAGAA
AAACTGGCCAAGTTCAATATTTTTTTATAAGCACATTATCAATTACttag
gtattagcttttctcgagattggctctttcattctttatgatttttgcac
aaagatgcataactataaaccctcgaatgtgactgagcccgatttttgaa
aaaacatgtttttgggcaaatttgggccaaaaaacggctaaaaaaagggt
ttttttggactttgtgaaatattggatcgttgtttttttctgattttttt
gcatgaaagtaggtaaaagatggctcaagcagatttttgtaaaaaaactt
ttcaGCTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCA
TACATCAATGTTCTTAGCCAAATTACTCACTTTTTTGATGAGATAGATGT
TTGTTTTTGCTCACAAagtcttgaatatgaaagaatatttcaagagcatg
aaattttggtttctaaacgtttttttataagaaacaaacgactaatttta
ataaatcgtcactaccTGTGTTCTggatgattgtttaacgttcatgctca
tgtagatatcaattatattatatgtgttaaatgcataaccaggtaggtcc
ataaaagtatcacttgttttactTGAAGCTGCAGTCCCTACAATACTATA
AAAAGTATGGATTTATGGATAGAACCATAAAAACATGATGCACAAAAGAG
GTGTAGCAAGGTAAGATTGTAAATTCTTTTCTTCTTTGGCTATGATTAAA
TTTCTCCCAGGCTTTCTAAATTTGTGTAATATTAAAAGAATCTGTCTGGC
AGACTTTCCACCTGACAACAAAAACCCAATTTCtggccaaagaaattttt
atgaGGATGTTTGTGATGATTAGgaagtcaaatgaaaaaaaagttggacA
CATTCTAACATACTTTTTATTTCTCTTTTAGGGataaaaccaacaaaaaa
cattgaaaaacagcgaaaaaactGGATGATTATGTTTTCCTTGATACCTA
GCACTCGGACATCGGGAGGGACGGATCAAAGTGCCAGGATGGCCTCATCA
AGTTCCAGTACTGGGAACTCTGGCGCACAAATGGCGAAATGGATGAAGGA
GATACAAGACTTTAAAGTTGATCGTGTTGAGATGAATAAACTGGTGATGA
ATTATTTGGTTCAGGAAGGATTCAAAGATGCAGCGGAGAGGTTTAAGCTG
GAGGCTGGTGTGGAGCCTGGACCCCAACTTGATTTATTGGATGATCGTAT
TAAGATCAGAGAGGCTGTCCAAAATGGTCAAATCGATGACGCCATATCAA
TGACCAATGACTTGCATCCAGACATTTTAGATTCGAAATCGcatttattt
ttccatttaCAACAACAGAAATTAATTGAACTGATACGTGAGAAAAATGT
GGACGAAGCTCTAGCCTTTGCTCAAAGTGTCATGTCTGAGCTTGGTACGG
AGAACACAGTCTATCTTGAAGAATTGGAAAAGACAATGGCTTTGTTAGCA
TATGAAGATCCGGACTCTTCACCTTTTGGTCATCTTTTGAACCCTTCGCA
ACGACATATGGTTGCTAGCGAAGTTAATGCCGCCATTTTGGAAACACAAC
ATCAAGAGACTATGCCTAAGTTGGCAGGCGTTGTTAAGCTATTGCTATGG
ACGCAAAACGAGCTAGACAGGAAGCATGTTAAATATCCCAAAATGACGGA
TATAGCTGAAGGGACCATCAAATCACACTCTGACGCAAAATCGAGCAGCT
CAAATACTACTActtaaaattctttgaattgattgaatttgaatttattg
aAGGGATCTTGGGGAGCTAGAGTTCTTCACCATTTCTGGGTTTGAAGATT
CCTAActttcttcaatctttgaaaGTGATCTTTACAACCAAATATCCTTT
ACAGCGCTTCTTAAATCACATGAAGCTTTTGAAGAGATCCCACTTAGTCC
AATACTTATTAATGATGCTCTCACATTCAATAATTTGGTTTTTGTACATT
ATTTTATTACTATGTTGACTTTatgtattttactttttttaaataatatc
aCGTAAATAGCAATGAAATATATATTAATAgttctaaatctttttttctt
agaTCATGTCAGACAAAGTCTCACTAGAGTTGTGataaatgaaaatgctt
cattCGTTTAAATTTAAAAAGCTATAGAGCTTTTAAGATCCCACCAGTGC
TGTCGTCATTCTCGTTCATTATAGTCAATACAGTCTTTGATtaacttttc
acttttcttttgttcagGTATCTTGGTAACAGCAACGAAAGATAAGAACA
ACAAATATCCTTACAACCCTACCACGTTGGTCTTGTTGTCAGAATGTCTC
AAAATGGTAACCGCAGCTGTCCTCTACGCCAAAGAGTACgtttcgatttt
acctgttctTTTTTATCGATCATTGTTCATTTAAAGAGAGTATTTCTTTT
TCGTACATTTTTTACCAATACTTCTCTTTATTGAAACGGTTTGCAACAGT
AAGTAGAAGGTAGAAGGTAGAAGCATAAGTTTCTTATACCAAAGGCTCTT
TTTTTATATCGTTTTTTATTTGTAACCAATAATGTTTTATTTATCCTTCC
AGTGATGGTATCTCAGGAGTTATCAGTGGTACAGTCAAATATTCGAGAGG
TAATTACCACCAATAAATAAAGACTTTGTAATAcctttttatgaaaagaa
accaaatcaaaaaataatataaacttATATAAACTAACAGGCCACTTATC
ACGAACATCTAGCCTATCAATGAATACTATATTATTTAGCTTCTAGACCT
GTCCAGATTAAAAATCACTGGTTCTTTAATTTCCTGTTAACTGGTACTAG
TCGGGATATTTTTGACCGGTATTCGAGAAATCTTTGGCCAGAACGCTATG
GTagttcatgaaaaaataaccggTATCCCTGTATTTTGTAGCCTCGAGAG
CCTCCATCTTTTGAAGTTAAATAATAAACACTTAACGTGAAGTTAAATAA
TAAACATTTAACGTGAAGTTAAATAATAAACATTTAACGTGAAGTTAAAT
AATAAACATTTAACGTGAAGTTAAATAATAAACATTCTTtaacgtttttc
ttttctttttgttgaaCNTGAAGTTGAATAATAAACATTCTTtaacgttt
ttcttttctttttgttgaaCAGTGTTGTTATGGTATTTAGTACCAGCGTT
TTTATATTGTTTATACAACAATCTGGCGTTCGTCAACCTTCAATCATATG
ATCCAACATCTTACTTCTTGTTGCTACAATTTCGTGTGGTAGTCACTGGC
GTCATCTTCCAGGTCAGTACCTTCCTTCATTCTTAAGTATTGTCTCTTTT
TGGGTTACAGGTTAATCTGTTAAATGATTTTTATTGTACAGttggcgctc
tctaattcgattttcgagaaatttcatcgaataagggaccgtatcgaata
atagagtgTCGTTTATGAGTGTTTCTTGTTACCGCGATGATTTTCATATC
GAATAatcatagtgtgcaccccccccaCTCTGCAGGGGGGGGGTTTGGAT
TTTTGGGTCCAAAACAGCCAGGTGGGAGTCTGAAATTTTGGACTTTCAGG
TGGGGGAAATAGGTTGAGGTGGGACTAGAAATCTTTAGGTGGGACTCTTA
TGGaaatcttgaaagaaaaatcattttacagtttgttgttgttgaattgA
ATTGCTTTACATTTCCTATCCGTGAACAAGTAAAAATTGAAGGGGAGGTC
AGCACATCGAAATTtggtaattaaaaaatttttaNNNNNNGACTCTTATG
GaaatcttgaaagaaaaattattttaaattttagatttttacatATTTGT
CTTTGAATCCTGTAATctgtttttcattgaaaattcccctgactttttat
tggaattttcaTTCCAAACTGCCCGAAGTGCCAACTGTTTGCCAATCAAA
TATGCAAAAAAGTTGGCCTTCATAAGGCAAAAATTATGCTTTAAACGAGt
cattcgaaagttcgaaagagtctgcaaagccaattaaaatcattctattC
TTCATGTACGTTAGTTCCCTATTTTAGGTGGGACTTGGAAAGTCAACTAT
CAGGTGGGAGTTTCTCAAGTGCTGGGACCTGGAATTTTAGGTGGGACCTT
GACCCCCCCTGCACACTATGATAATGGAGTATATCGaaaagtagaacgtc
gaattagagaacgtGAGATAGGTCTAGGAGAACATGGACGCTTCCCATTT
GAGCTTTTGAACACTGCCATACCTTCAAACACAGTATTGTTGTGTAGTCT
TTCCAAACGAGTTGTCCATCCAGTTCAGTATCCTTTctctaaacaaaaca
aaatatttttggtaacgATATTTCGACACTTATGTGTCTTATGTGTCTTT
TTCATGtatgttttgttttgacttaGTTACACATGTTATGGTTTCTCTAA
ACACTGTATTCTTTAGCCAAGTTCCATATTTTCTAATTAGCTAATGAATG
TCACTTTATTTTTGATATCCAGGTGGTTTTTAAAAAGAAGTTGAGTCGAA
CTCAATGGTTTTCGTTGATCCTCTTAACCCTTGGTTGTATCATCAAACAA
CTCAACATCTCCGGTGGTTCTTCTTCAACATCGTTCAACTTCGCcctcaa
tttcaatttcatgttGATTTTGGTGCAAATCTTTTGCTCCTGTTTCGCTG
GTGTTTACAATGAGTACTTGTTGAAAGGTAATAAAGAGGATGTTCCTTTC
ATGTTGCAAAATGTCTTCATGTATATGGATTCCATTGTCTGCAATGCCAT
CGTATTGGCGTACACCGGTAAACTGATGGGTGCTTTCACACCAGATGCCA
TGCAGACCATCCTCCAACCAAAAGTCATTCTAATTATCATCAATAATGCT
GCCATTGGTATCGTCACAGCCATGTTCCTCCGCTCTCTTAACTCCATCCT
CAAGACGTTCGCCAGCGCGTTAGAGTTGATGTTCACAGCTGTTTTATCTT
GGATGTTGTTCGGTATCCCCGTCAATGTTTTAACGGCCGTTGCCATAGCA
ATCGTCTCTTACGCTACCTTGTTGTACGCTCAGAATCCGGTGGATAATAC
GAAACCGGTCAACGAGAACAGGGAAGAGGACAATAGTAAAGTATAAATTG
TCACACATGCTCACTTATTTATTATAGTTCCGTCGATTTTTACTTCCATT
TCCAATTTTTGATTGCGGAAATGCTATGAAGTGATTGGACGGCGATTCTC
GTAATTTTTAAAGGAATCCTTATTAAAAAACGTAACCTTCACCATAGCTT
TCTAGCCTGATTTTCTTTAACTCTCAACTGTATAACACTGCGTTCATTTC
TTTCGCTTTTTATGATTTCTGAACTAAGTTAATCTGTAGATTCTGGGAAA
AGCTTTCAAAAGCAGTTAGTGATATACGGTTATTAAATAATACAGTTATt
agttttttgtattttaggTTTAGCTAGATTTCTATTGGACATATTTCTCA
ACTGTCTTAAATTTTAACAAGGCTATATTTAGAAAGAATCACGATGAAAT
TTCCATATTCCTTTCCAATTTAGCTATCCATTCATAATGGTTTTCATTAG
AAAATTGTtcgattttggagaaaaaaaagataGAATCGTGTGGCTTTTGA
AGGCTGGGAAATATACAAAAGAGTAGGGTGTTACTTATTGTAAACAAGTA
GAGACAAAATTACGAAATTATTAGAAATCTAAATGCGAAGACCGTTAGTT
TTTTTTGCTNTGTAAGCAAGTAGAGACACAATTACGAAATTATTAGAAAT
CTAAATGCAAATACCGCTAgtttttttgcgaatttttttaTTAGGGTAGA
TGTGTTTTAATagtgaaattatttttatttttcattattttgttctTGTA
AATTTCTGTTTAGGTTAAATTgaattttatttggaaaatttggaaaaaaa
taattttgacaattttttttcagttccaATATATTCACAAGGTgtttttg
gaagattggaaGGAAACTGATCGATCTTCATAATTTAgaaataattttgt
aatttgtAAGCGTTGTATATTTTATGACAAGAACTGACAAATCGATTGGA
ATTTCAATGTTgatttcaatacaccttttcgacctcGATCGAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00027480TCONS_00027480Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00027480-proteinTCONS_00027480-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000630supercontigsc0000630:36713..47206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.13	40.52	22.17	21.71	18.98	15.35	30.94	32.89	29.52	35.11	22.65	19.3	14.87	12.99	16.51	21.66	23.52	18.96	9.43	17.01	11.46	11.61	20.44	21.48	17.52	18.71	13.25	8.75	19.67	17.38