TCONS_00027480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027480
Unique NameTCONS_00027480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027480 ID=TCONS_00027480|Name=TCONS_00027480|organism=Clytia hemisphaerica|type=transcript|length=2137bp
CATTTTATAGACCAACCTCAACCatcattattcaaaataatGATTACTTA
CATCTATTTATTTAGTAGTAGATCCATAAAATTATACTAAATTAAAAGGT
TTGAAAGAATATTGCAATGATGCCGTCGTTATCAGACTTGAAGAATCTCT
TTCCGACGAAGCTGCATGCCATCATATTTGTTGGTTACATGGCTCTCTTC
ATTAATCAAGGTATCTTGGTAACAGCAACGAAAGATAAGAACAACAAATA
TCCTTACAACCCTACCACGTTGGTCTTGTTGTCAGAATGTCTCAAAATGG
TAACCGCAGCTGTCCTCTACGCCAAAGATGATGGTATCTCAGGAGTTATC
AGTGGTACAGTCAAATATTCGAGAGTGTTGTTATGGTATTTAGTACCAGC
GTTTTTATATTGTTTATACAACAATCTGGCGTTCGTCAACCTTCAATCAT
ATGATCCAACATCTTACTTCTTGTTGCTACAATTTCGTGTGGTAGTCACT
GGCGTCATCTTCCAGGTGGTTTTTAAAAAGAAGTTGAGTCGAACTCAATG
GTTTTCGTTGATCCTCTTAACCCTTGGTTGTATCATCAAACAACTCAACA
TCTCCGGTGGTTCTTCTTCAACATCGTTCAACTTCGCcctcaatttcaat
ttcatgttGATTTTGGTGCAAATCTTTTGCTCCTGTTTCGCTGGTGTTTA
CAATGAGTACTTGTTGAAAGGTAATAAAGAGGATGTTCCTTTCATGTTGC
AAAATGTCTTCATGTATATGGATTCCATTGTCTGCAATGCCATCGTATTG
GCGTACACCGGTAAACTGATGGGTGCTTTCACACCAGATGCCATGCAGAC
CATCCTCCAACCAAAAGTCATTCTAATTATCATCAATAATGCTGCCATTG
GTATCGTCACAGCCATGTTCCTCCGCTCTCTTAACTCCATCCTCAAGACG
TTCGCCAGCGCGTTAGAGTTGATGTTCACAGCTGTTTTATCTTGGATGTT
GTTCGGTATCCCCGTCAATGTTTTAACGGCCGTTGCCATAGCAATCGTCT
CTTACGCTACCTTGTTGTACGCTCAGAATCCGGTGGATAATACGAAACCG
GTCAACGAGAACAGGGAAGAGGACAATAGTAAAGTATAAATTGTCACACA
TGCTCACTTATTTATTATAGTTCCGTCGATTTTTACTTCCATTTCCAATT
TTTGATTGCGGAAATGCTATGAAGTGATTGGACGGCGATTCTCGTAATTT
TTAAAGGAATCCTTATTAAAAAACGTAACCTTCACCATAGCTTTCTAGCC
TGATTTTCTTTAACTCTCAACTGTATAACACTGCGTTCATTTCTTTCGCT
TTTTATGATTTCTGAACTAAGTTAATCTGTAGATTCTGGGAAAAGCTTTC
AAAAGCAGTTAGTGATATACGGTTATTAAATAATACAGTTATtagttttt
tgtattttaggTTTAGCTAGATTTCTATTGGACATATTTCTCAACTGTCT
TAAATTTTAACAAGGCTATATTTAGAAAGAATCACGATGAAATTTCCATA
TTCCTTTCCAATTTAGCTATCCATTCATAATGGTTTTCATTAGAAAATTG
TtcgattttggagaaaaaaaagataGAATCGTGTGGCTTTTGAAGGCTGG
GAAATATACAAAAGAGTAGGGTGTTACTTATTGTAAACAAGTAGAGACAA
AATTACGAAATTATTAGAAATCTAAATGCGAAGACCGTTAGTTTTTTTTG
CTNTGTAAGCAAGTAGAGACACAATTACGAAATTATTAGAAATCTAAATG
CAAATACCGCTAgtttttttgcgaatttttttaTTAGGGTAGATGTGTTT
TAATagtgaaattatttttatttttcattattttgttctTGTAAATTTCT
GTTTAGGTTAAATTgaattttatttggaaaatttggaaaaaaataatttt
gacaattttttttcagttccaATATATTCACAAGGTgtttttggaagatt
ggaaGGAAACTGATCGATCTTCATAATTTAgaaataattttgtaatttgt
AAGCGTTGTATATTTTATGACAAGAACTGACAAATCGATTGGAATTTCAA
TGTTgatttcaatacaccttttcgacctcGATCGAAT
Run BLAST on NCBI

protein sequence of TCONS_00027480-protein

>TCONS_00027480-protein ID=TCONS_00027480-protein|Name=TCONS_00027480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MMPSLSDLKNLFPTKLHAIIFVGYMALFINQGILVTATKDKNNKYPYNPT
TLVLLSECLKMVTAAVLYAKDDGISGVISGTVKYSRVLLWYLVPAFLYCL
YNNLAFVNLQSYDPTSYFLLLQFRVVVTGVIFQVVFKKKLSRTQWFSLIL
LTLGCIIKQLNISGGSSSTSFNFALNFNFMLILVQIFCSCFAGVYNEYLL
KGNKEDVPFMLQNVFMYMDSIVCNAIVLAYTGKLMGAFTPDAMQTILQPK
VILIIINNAAIGIVTAMFLRSLNSILKTFASALELMFTAVLSWMLFGIPV
NVLTAVAIAIVSYATLLYAQNPVDNTKPVNENREEDNSKV
Run BLAST on NCBI

transcript from alignment at sc0000630:36713..47206+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027480 ID=TCONS_00027480|Name=TCONS_00027480|organism=Clytia hemisphaerica|type=transcript|length=10494bp|location=Sequence derived from alignment at sc0000630:36713..47206+ (Clytia hemisphaerica)
CATTTTATAGACCAACCTCAACCatcattattcaaaataatGATTACTTA
CATCTATTTATTTAGTAGTAGATCCATAAAATTATACTAAATTAAAAGGT
TTGAAAGAATATTGCAATGATGCCGTCGTTATCAGACTTGAAGAATCTCT
TTCCGACGAAGCTGCATGCCATCATATTTGTTGGTTACATGGCTCTCTTC
ATTAATCAAGGTatctatttattttgaattaatttgtAGTCTGCTGAGGG
GACTACAAAATGCAAGTAGCACTGTTTAGCTTGAATACAACAGAATACAA
TGATattcaaattaaaaagtaataaagccaaaaaatgctatattttcgTT
GATTATTTTAGATACAAAAAAATAAGCATGCATATTATGGTCTGTATACG
AAAATGAGTACTAATAAAGgaatttgttaatttttatttaacgtaaaaaa
ggaaaaagtgaCAACTTTTCCTCATTAATGCCCCCTCCCTTGAAAACTTC
CTTTTTGGAATGGGCAGCTGCAAAACTTGACGCACTTGATAAAAGCCCAT
TGTCATTCAAGGAGAATTTGTACAATTGagcttttggacctaccccggtg
gggtggaggtcctataaattcacctctgtccgtccgtccgttcgttacca
gattttctcgagattgaatcataggaatcatttgatttttggtacaaagg
tgcaaaacggtggtggccaaaatgtgaccgagcccgattttcgaaaaaaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNggtaaaagatggctcaagcagatttttgcaaaaaaatttatt
tggcttaaaaaacgcatgtttatctataagaatcactattaataagcatg
catcaatgttcttagtcaaattactcaatttgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNcttaaaaaacgcatgtttatctataagaa
tcactattaataagcatacatcaatgttcttagtcaaattactcaatttc
tttatgagatagaagtttttttttgcttatgagggcttacttttgaagaa
tatgcgtgtttagacatgaaatgTTGGTTGCTTGGCGTGCTTTTATAGAA
AAACTGGCCAAGTTCAATATTTTTTTATAAGCACATTATCAATTACttag
gtattagcttttctcgagattggctctttcattctttatgatttttgcac
aaagatgcataactataaaccctcgaatgtgactgagcccgatttttgaa
aaaacatgtttttgggcaaatttgggccaaaaaacggctaaaaaaagggt
ttttttggactttgtgaaatattggatcgttgtttttttctgattttttt
gcatgaaagtaggtaaaagatggctcaagcagatttttgtaaaaaaactt
ttcaGCTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCA
TACATCAATGTTCTTAGCCAAATTACTCACTTTTTTGATGAGATAGATGT
TTGTTTTTGCTCACAAagtcttgaatatgaaagaatatttcaagagcatg
aaattttggtttctaaacgtttttttataagaaacaaacgactaatttta
ataaatcgtcactaccTGTGTTCTggatgattgtttaacgttcatgctca
tgtagatatcaattatattatatgtgttaaatgcataaccaggtaggtcc
ataaaagtatcacttgttttactTGAAGCTGCAGTCCCTACAATACTATA
AAAAGTATGGATTTATGGATAGAACCATAAAAACATGATGCACAAAAGAG
GTGTAGCAAGGTAAGATTGTAAATTCTTTTCTTCTTTGGCTATGATTAAA
TTTCTCCCAGGCTTTCTAAATTTGTGTAATATTAAAAGAATCTGTCTGGC
AGACTTTCCACCTGACAACAAAAACCCAATTTCtggccaaagaaattttt
atgaGGATGTTTGTGATGATTAGgaagtcaaatgaaaaaaaagttggacA
CATTCTAACATACTTTTTATTTCTCTTTTAGGGataaaaccaacaaaaaa
cattgaaaaacagcgaaaaaactGGATGATTATGTTTTCCTTGATACCTA
GCACTCGGACATCGGGAGGGACGGATCAAAGTGCCAGGATGGCCTCATCA
AGTTCCAGTACTGGGAACTCTGGCGCACAAATGGCGAAATGGATGAAGGA
GATACAAGACTTTAAAGTTGATCGTGTTGAGATGAATAAACTGGTGATGA
ATTATTTGGTTCAGGAAGGATTCAAAGATGCAGCGGAGAGGTTTAAGCTG
GAGGCTGGTGTGGAGCCTGGACCCCAACTTGATTTATTGGATGATCGTAT
TAAGATCAGAGAGGCTGTCCAAAATGGTCAAATCGATGACGCCATATCAA
TGACCAATGACTTGCATCCAGACATTTTAGATTCGAAATCGcatttattt
ttccatttaCAACAACAGAAATTAATTGAACTGATACGTGAGAAAAATGT
GGACGAAGCTCTAGCCTTTGCTCAAAGTGTCATGTCTGAGCTTGGTACGG
AGAACACAGTCTATCTTGAAGAATTGGAAAAGACAATGGCTTTGTTAGCA
TATGAAGATCCGGACTCTTCACCTTTTGGTCATCTTTTGAACCCTTCGCA
ACGACATATGGTTGCTAGCGAAGTTAATGCCGCCATTTTGGAAACACAAC
ATCAAGAGACTATGCCTAAGTTGGCAGGCGTTGTTAAGCTATTGCTATGG
ACGCAAAACGAGCTAGACAGGAAGCATGTTAAATATCCCAAAATGACGGA
TATAGCTGAAGGGACCATCAAATCACACTCTGACGCAAAATCGAGCAGCT
CAAATACTACTActtaaaattctttgaattgattgaatttgaatttattg
aAGGGATCTTGGGGAGCTAGAGTTCTTCACCATTTCTGGGTTTGAAGATT
CCTAActttcttcaatctttgaaaGTGATCTTTACAACCAAATATCCTTT
ACAGCGCTTCTTAAATCACATGAAGCTTTTGAAGAGATCCCACTTAGTCC
AATACTTATTAATGATGCTCTCACATTCAATAATTTGGTTTTTGTACATT
ATTTTATTACTATGTTGACTTTatgtattttactttttttaaataatatc
aCGTAAATAGCAATGAAATATATATTAATAgttctaaatctttttttctt
agaTCATGTCAGACAAAGTCTCACTAGAGTTGTGataaatgaaaatgctt
cattCGTTTAAATTTAAAAAGCTATAGAGCTTTTAAGATCCCACCAGTGC
TGTCGTCATTCTCGTTCATTATAGTCAATACAGTCTTTGATtaacttttc
acttttcttttgttcagGTATCTTGGTAACAGCAACGAAAGATAAGAACA
ACAAATATCCTTACAACCCTACCACGTTGGTCTTGTTGTCAGAATGTCTC
AAAATGGTAACCGCAGCTGTCCTCTACGCCAAAGAGTACgtttcgatttt
acctgttctTTTTTATCGATCATTGTTCATTTAAAGAGAGTATTTCTTTT
TCGTACATTTTTTACCAATACTTCTCTTTATTGAAACGGTTTGCAACAGT
AAGTAGAAGGTAGAAGGTAGAAGCATAAGTTTCTTATACCAAAGGCTCTT
TTTTTATATCGTTTTTTATTTGTAACCAATAATGTTTTATTTATCCTTCC
AGTGATGGTATCTCAGGAGTTATCAGTGGTACAGTCAAATATTCGAGAGG
TAATTACCACCAATAAATAAAGACTTTGTAATAcctttttatgaaaagaa
accaaatcaaaaaataatataaacttATATAAACTAACAGGCCACTTATC
ACGAACATCTAGCCTATCAATGAATACTATATTATTTAGCTTCTAGACCT
GTCCAGATTAAAAATCACTGGTTCTTTAATTTCCTGTTAACTGGTACTAG
TCGGGATATTTTTGACCGGTATTCGAGAAATCTTTGGCCAGAACGCTATG
GTagttcatgaaaaaataaccggTATCCCTGTATTTTGTAGCCTCGAGAG
CCTCCATCTTTTGAAGTTAAATAATAAACACTTAACGTGAAGTTAAATAA
TAAACATTTAACGTGAAGTTAAATAATAAACATTTAACGTGAAGTTAAAT
AATAAACATTTAACGTGAAGTTAAATAATAAACATTCTTtaacgtttttc
ttttctttttgttgaaCNTGAAGTTGAATAATAAACATTCTTtaacgttt
ttcttttctttttgttgaaCAGTGTTGTTATGGTATTTAGTACCAGCGTT
TTTATATTGTTTATACAACAATCTGGCGTTCGTCAACCTTCAATCATATG
ATCCAACATCTTACTTCTTGTTGCTACAATTTCGTGTGGTAGTCACTGGC
GTCATCTTCCAGGTCAGTACCTTCCTTCATTCTTAAGTATTGTCTCTTTT
TGGGTTACAGGTTAATCTGTTAAATGATTTTTATTGTACAGttggcgctc
tctaattcgattttcgagaaatttcatcgaataagggaccgtatcgaata
atagagtgTCGTTTATGAGTGTTTCTTGTTACCGCGATGATTTTCATATC
GAATAatcatagtgtgcaccccccccaCTCTGCAGGGGGGGGGTTTGGAT
TTTTGGGTCCAAAACAGCCAGGTGGGAGTCTGAAATTTTGGACTTTCAGG
TGGGGGAAATAGGTTGAGGTGGGACTAGAAATCTTTAGGTGGGACTCTTA
TGGaaatcttgaaagaaaaatcattttacagtttgttgttgttgaattgA
ATTGCTTTACATTTCCTATCCGTGAACAAGTAAAAATTGAAGGGGAGGTC
AGCACATCGAAATTtggtaattaaaaaatttttaNNNNNNGACTCTTATG
GaaatcttgaaagaaaaattattttaaattttagatttttacatATTTGT
CTTTGAATCCTGTAATctgtttttcattgaaaattcccctgactttttat
tggaattttcaTTCCAAACTGCCCGAAGTGCCAACTGTTTGCCAATCAAA
TATGCAAAAAAGTTGGCCTTCATAAGGCAAAAATTATGCTTTAAACGAGt
cattcgaaagttcgaaagagtctgcaaagccaattaaaatcattctattC
TTCATGTACGTTAGTTCCCTATTTTAGGTGGGACTTGGAAAGTCAACTAT
CAGGTGGGAGTTTCTCAAGTGCTGGGACCTGGAATTTTAGGTGGGACCTT
GACCCCCCCTGCACACTATGATAATGGAGTATATCGaaaagtagaacgtc
gaattagagaacgtGAGATAGGTCTAGGAGAACATGGACGCTTCCCATTT
GAGCTTTTGAACACTGCCATACCTTCAAACACAGTATTGTTGTGTAGTCT
TTCCAAACGAGTTGTCCATCCAGTTCAGTATCCTTTctctaaacaaaaca
aaatatttttggtaacgATATTTCGACACTTATGTGTCTTATGTGTCTTT
TTCATGtatgttttgttttgacttaGTTACACATGTTATGGTTTCTCTAA
ACACTGTATTCTTTAGCCAAGTTCCATATTTTCTAATTAGCTAATGAATG
TCACTTTATTTTTGATATCCAGGTGGTTTTTAAAAAGAAGTTGAGTCGAA
CTCAATGGTTTTCGTTGATCCTCTTAACCCTTGGTTGTATCATCAAACAA
CTCAACATCTCCGGTGGTTCTTCTTCAACATCGTTCAACTTCGCcctcaa
tttcaatttcatgttGATTTTGGTGCAAATCTTTTGCTCCTGTTTCGCTG
GTGTTTACAATGAGTACTTGTTGAAAGGTAATAAAGAGGATGTTCCTTTC
ATGTTGCAAAATGTCTTCATGTATATGGATTCCATTGTCTGCAATGCCAT
CGTATTGGCGTACACCGGTAAACTGATGGGTGCTTTCACACCAGATGCCA
TGCAGACCATCCTCCAACCAAAAGTCATTCTAATTATCATCAATAATGCT
GCCATTGGTATCGTCACAGCCATGTTCCTCCGCTCTCTTAACTCCATCCT
CAAGACGTTCGCCAGCGCGTTAGAGTTGATGTTCACAGCTGTTTTATCTT
GGATGTTGTTCGGTATCCCCGTCAATGTTTTAACGGCCGTTGCCATAGCA
ATCGTCTCTTACGCTACCTTGTTGTACGCTCAGAATCCGGTGGATAATAC
GAAACCGGTCAACGAGAACAGGGAAGAGGACAATAGTAAAGTATAAATTG
TCACACATGCTCACTTATTTATTATAGTTCCGTCGATTTTTACTTCCATT
TCCAATTTTTGATTGCGGAAATGCTATGAAGTGATTGGACGGCGATTCTC
GTAATTTTTAAAGGAATCCTTATTAAAAAACGTAACCTTCACCATAGCTT
TCTAGCCTGATTTTCTTTAACTCTCAACTGTATAACACTGCGTTCATTTC
TTTCGCTTTTTATGATTTCTGAACTAAGTTAATCTGTAGATTCTGGGAAA
AGCTTTCAAAAGCAGTTAGTGATATACGGTTATTAAATAATACAGTTATt
agttttttgtattttaggTTTAGCTAGATTTCTATTGGACATATTTCTCA
ACTGTCTTAAATTTTAACAAGGCTATATTTAGAAAGAATCACGATGAAAT
TTCCATATTCCTTTCCAATTTAGCTATCCATTCATAATGGTTTTCATTAG
AAAATTGTtcgattttggagaaaaaaaagataGAATCGTGTGGCTTTTGA
AGGCTGGGAAATATACAAAAGAGTAGGGTGTTACTTATTGTAAACAAGTA
GAGACAAAATTACGAAATTATTAGAAATCTAAATGCGAAGACCGTTAGTT
TTTTTTGCTNTGTAAGCAAGTAGAGACACAATTACGAAATTATTAGAAAT
CTAAATGCAAATACCGCTAgtttttttgcgaatttttttaTTAGGGTAGA
TGTGTTTTAATagtgaaattatttttatttttcattattttgttctTGTA
AATTTCTGTTTAGGTTAAATTgaattttatttggaaaatttggaaaaaaa
taattttgacaattttttttcagttccaATATATTCACAAGGTgtttttg
gaagattggaaGGAAACTGATCGATCTTCATAATTTAgaaataattttgt
aatttgtAAGCGTTGTATATTTTATGACAAGAACTGACAAATCGATTGGA
ATTTCAATGTTgatttcaatacaccttttcgacctcGATCGAAT

Coding sequence (CDS) from alignment at sc0000630:36713..47206+

>TCONS_00027480 ID=TCONS_00027480|Name=TCONS_00027480|organism=Clytia hemisphaerica|type=CDS|length=5115bp|location=Sequence derived from alignment at sc0000630:36713..47206+ (Clytia hemisphaerica)
ATGATGCCGTCGTTATCAGACTTGAAGAATCTCTTTCCGACGAAGCTGCA
TGCCATCATATTTGTTGGTTACATGGCTCTCTTCATTAATCAAGGTATCT
TGGTAACAGCAACGAAAGATAAGAACAACAAATATCCTTACAACCCTACC
ACGTTGGTCTTGTTGTCAGAATGTCTCAAAATGGTAACCGCAGCTGTCCT
CTACGCCAAAGATGATGGTATCTCAGGAGTTATCAGTGGTACAGTCAAAT
ATTCGAGAGTGTTGTTATGGTATTTAGTACCAGCGTTTTTATATTGTTTA
TACAACAATCTGGCGTTCGTCAACCTTCAATCATATGATCCAACATCTTA
CTTCTTGTTGCTACAATTTCGTGTGGTAGTCACTGGCGTCATCTTCCAGG
TGGTTTTTAAAAAGAAGTTGAGTCGAACTCAATGGTTTTCGTTGATCCTC
TTAACCCTTGGTTGTATCATCAAACAACTCAACATCTCCGGTGGTTCTTC
TTCAACATCGTTCAACTTCGCcctcaatttcaatttcatgttGATTTTGG
TGCAAATCTTTTGCTCCTGTTTCGCTGGTGTTTACAATGAGTACTTGTTG
AAAGGTAATAAAGAGGATGTTCCTTTCATGTTGCAAAATGTCTTCATGTA
TATGGATTCCATTGTCTGCAATGCCATCGTATTGGCGTACACCGGTAAAC
TGATGGGTGCTTTCACACCAGATGCCATGCAGACCATCCTCCAACCAAAA
GTCATTCTAATTATCATCAATAATGCTGCCATTGGTATCGTCACAGCCAT
GTTCCTCCGCTCTCTTAACTCCATCCTCAAGACGTTCGCCAGCGCGTTAG
AGTTGATGTTCACAGCTGTTTTATCTTGGATGTTGTTCGGTATCCCCGTC
AATGTTTTAACGGCCGTTGCCATAGCAATCGTCTCTTACGCTACCTTGTT
GTACGCTCAGAATCCGGTGGATAATACGAAACCGGTCAACGAGAACAGGG
AAGAGGACAATAGTAAAGTATAAATGATGCCGTCGTTATCAGACTTGAAG
AATCTCTTTCCGACGAAGCTGCATGCCATCATATTTGTTGGTTACATGGC
TCTCTTCATTAATCAAGGTATCTTGGTAACAGCAACGAAAGATAAGAACA
ACAAATATCCTTACAACCCTACCACGTTGGTCTTGTTGTCAGAATGTCTC
AAAATGGTAACCGCAGCTGTCCTCTACGCCAAAGATGATGGTATCTCAGG
AGTTATCAGTGGTACAGTCAAATATTCGAGAGTGTTGTTATGGTATTTAG
TACCAGCGTTTTTATATTGTTTATACAACAATCTGGCGTTCGTCAACCTT
CAATCATATGATCCAACATCTTACTTCTTGTTGCTACAATTTCGTGTGGT
AGTCACTGGCGTCATCTTCCAGGTGGTTTTTAAAAAGAAGTTGAGTCGAA
CTCAATGGTTTTCGTTGATCCTCTTAACCCTTGGTTGTATCATCAAACAA
CTCAACATCTCCGGTGGTTCTTCTTCAACATCGTTCAACTTCGCcctcaa
tttcaatttcatgttGATTTTGGTGCAAATCTTTTGCTCCTGTTTCGCTG
GTGTTTACAATGAGTACTTGTTGAAAGGTAATAAAGAGGATGTTCCTTTC
ATGTTGCAAAATGTCTTCATGTATATGGATTCCATTGTCTGCAATGCCAT
CGTATTGGCGTACACCGGTAAACTGATGGGTGCTTTCACACCAGATGCCA
TGCAGACCATCCTCCAACCAAAAGTCATTCTAATTATCATCAATAATGCT
GCCATTGGTATCGTCACAGCCATGTTCCTCCGCTCTCTTAACTCCATCCT
CAAGACGTTCGCCAGCGCGTTAGAGTTGATGTTCACAGCTGTTTTATCTT
GGATGTTGTTCGGTATCCCCGTCAATGTTTTAACGGCCGTTGCCATAGCA
ATCGTCTCTTACGCTACCTTGTTGTACGCTCAGAATCCGGTGGATAATAC
GAAACCGGTCAACGAGAACAGGGAAGAGGACAATAGTAAAGTATAAATGA
TGCCGTCGTTATCAGACTTGAAGAATCTCTTTCCGACGAAGCTGCATGCC
ATCATATTTGTTGGTTACATGGCTCTCTTCATTAATCAAGGTATCTTGGT
AACAGCAACGAAAGATAAGAACAACAAATATCCTTACAACCCTACCACGT
TGGTCTTGTTGTCAGAATGTCTCAAAATGGTAACCGCAGCTGTCCTCTAC
GCCAAAGATGATGGTATCTCAGGAGTTATCAGTGGTACAGTCAAATATTC
GAGAGTGTTGTTATGGTATTTAGTACCAGCGTTTTTATATTGTTTATACA
ACAATCTGGCGTTCGTCAACCTTCAATCATATGATCCAACATCTTACTTC
TTGTTGCTACAATTTCGTGTGGTAGTCACTGGCGTCATCTTCCAGGTGGT
TTTTAAAAAGAAGTTGAGTCGAACTCAATGGTTTTCGTTGATCCTCTTAA
CCCTTGGTTGTATCATCAAACAACTCAACATCTCCGGTGGTTCTTCTTCA
ACATCGTTCAACTTCGCcctcaatttcaatttcatgttGATTTTGGTGCA
AATCTTTTGCTCCTGTTTCGCTGGTGTTTACAATGAGTACTTGTTGAAAG
GTAATAAAGAGGATGTTCCTTTCATGTTGCAAAATGTCTTCATGTATATG
GATTCCATTGTCTGCAATGCCATCGTATTGGCGTACACCGGTAAACTGAT
GGGTGCTTTCACACCAGATGCCATGCAGACCATCCTCCAACCAAAAGTCA
TTCTAATTATCATCAATAATGCTGCCATTGGTATCGTCACAGCCATGTTC
CTCCGCTCTCTTAACTCCATCCTCAAGACGTTCGCCAGCGCGTTAGAGTT
GATGTTCACAGCTGTTTTATCTTGGATGTTGTTCGGTATCCCCGTCAATG
TTTTAACGGCCGTTGCCATAGCAATCGTCTCTTACGCTACCTTGTTGTAC
GCTCAGAATCCGGTGGATAATACGAAACCGGTCAACGAGAACAGGGAAGA
GGACAATAGTAAAGTATAAATGATGCCGTCGTTATCAGACTTGAAGAATC
TCTTTCCGACGAAGCTGCATGCCATCATATTTGTTGGTTACATGGCTCTC
TTCATTAATCAAGGTATCTTGGTAACAGCAACGAAAGATAAGAACAACAA
ATATCCTTACAACCCTACCACGTTGGTCTTGTTGTCAGAATGTCTCAAAA
TGGTAACCGCAGCTGTCCTCTACGCCAAAGATGATGGTATCTCAGGAGTT
ATCAGTGGTACAGTCAAATATTCGAGAGTGTTGTTATGGTATTTAGTACC
AGCGTTTTTATATTGTTTATACAACAATCTGGCGTTCGTCAACCTTCAAT
CATATGATCCAACATCTTACTTCTTGTTGCTACAATTTCGTGTGGTAGTC
ACTGGCGTCATCTTCCAGGTGGTTTTTAAAAAGAAGTTGAGTCGAACTCA
ATGGTTTTCGTTGATCCTCTTAACCCTTGGTTGTATCATCAAACAACTCA
ACATCTCCGGTGGTTCTTCTTCAACATCGTTCAACTTCGCcctcaatttc
aatttcatgttGATTTTGGTGCAAATCTTTTGCTCCTGTTTCGCTGGTGT
TTACAATGAGTACTTGTTGAAAGGTAATAAAGAGGATGTTCCTTTCATGT
TGCAAAATGTCTTCATGTATATGGATTCCATTGTCTGCAATGCCATCGTA
TTGGCGTACACCGGTAAACTGATGGGTGCTTTCACACCAGATGCCATGCA
GACCATCCTCCAACCAAAAGTCATTCTAATTATCATCAATAATGCTGCCA
TTGGTATCGTCACAGCCATGTTCCTCCGCTCTCTTAACTCCATCCTCAAG
ACGTTCGCCAGCGCGTTAGAGTTGATGTTCACAGCTGTTTTATCTTGGAT
GTTGTTCGGTATCCCCGTCAATGTTTTAACGGCCGTTGCCATAGCAATCG
TCTCTTACGCTACCTTGTTGTACGCTCAGAATCCGGTGGATAATACGAAA
CCGGTCAACGAGAACAGGGAAGAGGACAATAGTAAAGTATAAATGATGCC
GTCGTTATCAGACTTGAAGAATCTCTTTCCGACGAAGCTGCATGCCATCA
TATTTGTTGGTTACATGGCTCTCTTCATTAATCAAGGTATCTTGGTAACA
GCAACGAAAGATAAGAACAACAAATATCCTTACAACCCTACCACGTTGGT
CTTGTTGTCAGAATGTCTCAAAATGGTAACCGCAGCTGTCCTCTACGCCA
AAGATGATGGTATCTCAGGAGTTATCAGTGGTACAGTCAAATATTCGAGA
GTGTTGTTATGGTATTTAGTACCAGCGTTTTTATATTGTTTATACAACAA
TCTGGCGTTCGTCAACCTTCAATCATATGATCCAACATCTTACTTCTTGT
TGCTACAATTTCGTGTGGTAGTCACTGGCGTCATCTTCCAGGTGGTTTTT
AAAAAGAAGTTGAGTCGAACTCAATGGTTTTCGTTGATCCTCTTAACCCT
TGGTTGTATCATCAAACAACTCAACATCTCCGGTGGTTCTTCTTCAACAT
CGTTCAACTTCGCcctcaatttcaatttcatgttGATTTTGGTGCAAATC
TTTTGCTCCTGTTTCGCTGGTGTTTACAATGAGTACTTGTTGAAAGGTAA
TAAAGAGGATGTTCCTTTCATGTTGCAAAATGTCTTCATGTATATGGATT
CCATTGTCTGCAATGCCATCGTATTGGCGTACACCGGTAAACTGATGGGT
GCTTTCACACCAGATGCCATGCAGACCATCCTCCAACCAAAAGTCATTCT
AATTATCATCAATAATGCTGCCATTGGTATCGTCACAGCCATGTTCCTCC
GCTCTCTTAACTCCATCCTCAAGACGTTCGCCAGCGCGTTAGAGTTGATG
TTCACAGCTGTTTTATCTTGGATGTTGTTCGGTATCCCCGTCAATGTTTT
AACGGCCGTTGCCATAGCAATCGTCTCTTACGCTACCTTGTTGTACGCTC
AGAATCCGGTGGATAATACGAAACCGGTCAACGAGAACAGGGAAGAGGAC
AATAGTAAAGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015485XLOC_015485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027480-exon-sc0000630-1491911889:36713..36922TCONS_00027480-exon-sc0000630-1491911889:36713..36922Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1510915933:36713..36922TCONS_00027480-exon-sc0000630-1510915933:36713..36922Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1575043694:36713..36922TCONS_00027480-exon-sc0000630-1575043694:36713..36922Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1491911889:43330..43447TCONS_00027480-exon-sc0000630-1491911889:43330..43447Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1510915933:43330..43447TCONS_00027480-exon-sc0000630-1510915933:43330..43447Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1575043694:43330..43447TCONS_00027480-exon-sc0000630-1575043694:43330..43447Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1491911889:43665..43711TCONS_00027480-exon-sc0000630-1491911889:43665..43711Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1510915933:43665..43711TCONS_00027480-exon-sc0000630-1510915933:43665..43711Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1575043694:43665..43711TCONS_00027480-exon-sc0000630-1575043694:43665..43711Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1491911889:44235..44374TCONS_00027480-exon-sc0000630-1491911889:44235..44374Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1510915933:44235..44374TCONS_00027480-exon-sc0000630-1510915933:44235..44374Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1575043694:44235..44374TCONS_00027480-exon-sc0000630-1575043694:44235..44374Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1491911889:45585..47206TCONS_00027480-exon-sc0000630-1491911889:45585..47206Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1510915933:45585..47206TCONS_00027480-exon-sc0000630-1510915933:45585..47206Clytia hemisphaericaexon
TCONS_00027480-exon-sc0000630-1575043694:45585..47206TCONS_00027480-exon-sc0000630-1575043694:45585..47206Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027480-proteinTCONS_00027480-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000630supercontigsc0000630:36713..47206 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.1264	40.518	22.1684	21.7087	18.9836	15.3541	30.9444	32.89	29.5243	35.1108	22.6512	19.3019	14.8693	12.989	16.5092	21.664	23.5249	18.9585	9.42841	17.0099	11.4577	11.6112	20.4445	21.4835	17.5242	18.7079	13.2467	8.75164	19.6683	17.3754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007271Nuc_sug_transpt
Vocabulary: Cellular Component
TermDefinition
GO:0000139Golgi membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0008643carbohydrate transport
Vocabulary: Molecular Function
TermDefinition
GO:0005351sugar:proton symporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005351 sugar:proton symporter activity
Blast
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BLAST of TCONS_00027480 vs. Swiss-Prot (Human)
Match: S35A1 (CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.559e-17
Identity = 82/340 (24.12%), Postives = 157/340 (46.18%), Query Frame = 3 
Query:  159 KLHAIIFVGYMALFINQGILVTATKDKNNKYPYNPTTLVLLSECLKMVTAAVLYAKDDGISGVISGTVKYS-----RVLLWYLVPAFLYCLYNNLAFVNLQSYDPTSYFLLLQXXXXXXXXXXXXXXKKKLSRTQWFSLILLTLGCIIKQLNISGGSSSTSFNFALNFNFMLILVQIFCSCFAGVYNEYLLKGNKEDVPFMLQNVFMYMDSIVCNAIVLAYTGKLMGAFTPDAMQTILQPK---------VXXXXXXXXXXXXVTAMFLRSLNSILKTFASALELMFTAVLSWMLFGIPVNVLTAVAIAIVSYATLLYAQNPVDNTKPVNENREEDNSKV 1136
            KL+ +  +  MA      +  T T DK     Y  TT V ++E +K++ +  + AK+ G  G    +++ +     + LL   VP+ +Y + NN+AF+ L + D   Y +  Q ++  T +   ++  + LS+ QW S+ +L  G  + Q   +  +        L   F  I + + CS FAGVY E +LK +  D    ++N+ MY+  I+           L G +  D  +  ++ K         V  +I   +  G+ T++ ++  ++I+K F++A  ++ + + S MLFG+ + +  A+   +V  +  LY   P  +T  + +       +V
Sbjct:   13 KLYCLAVMTLMAAVYTIALRYTRTSDKE---LYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPL-LGFGAIAIAVLCSGFAGVYFEKVLKSS--DTSLWVRNIQMYLSGIIVT---------LAGVYLSDGAE--IKEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLYGL-PRQDTTSIQQGETASKERV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00027480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35A14.559e-1724.12CMP-sialic acid transporter OS=Homo sapiens GN=SLC... [more]
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