XLOC_015962 (gene) - C. hemisphaerica

Overview
NameXLOC_015962
Unique NameXLOC_015962
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000670:96424..102198+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015962 ID=XLOC_015962|Name=XLOC_015962|organism=Clytia hemisphaerica|type=gene|length=5775bp|location=Sequence derived from alignment at sc0000670:96424..102198+ (Clytia hemisphaerica)
GGGGACTTAGATTTATTTGTATGCaattcagtggggataggaaaaatagc ataatatttagTAAGGATAGCTTTCATCATGAATATAACCATAACTTTCC ATAAGGGACggtattttggccattttgttCAAGCAaaaagggttcccagt gggtctgtgagaagggggtttcAAGATGTAACAAAAACCCAGCATAATAC AAAAATACTATATTAAAGTATAATTAAGATTCAAATTTACCCTACAAATT ACATGAAAATTACTTTCACTCTCATATAAAACATTTCAGTTATACAAAAT AATTCTCCTCCTACAAATCTTATGAATACATTACCCGGGGTCCactttgt ctgtacacagacccagtatctacggctaatttaaaaatctattgcCGTAG AGGGACtattgtcattgtcttttctcatttgagatttttcaaaccgaccg ctgcgatggagtgctggtgaaagaggggagacgatgagagaagttatgct atttataaatcatacttcatcgcagaggtctccatacgggaattttttat caaacagacaatgcgcacagagtgtgaGACCTGAAGCTtattgatagact ggatggcgcgattaagtgacCCAGTAGCATATGTTAAAAAAGCTTAGGCG GACTGCAAAACAGTTCAGTTAGAAGTTAGAAGTAGACTCTAATCTAATAA GTCcccgaaaataaaaaaatatgacaattgaaaaattattttacctCGAC AAGTACCACGCACACAATATTATCATATCCACatacaaaaaaatcattat cactttcaaaaaaccAATTGCCGTGGTGGTcgtttttctttaaagttaaG GATTTGAGATTATCAGTCGGGTGCAGAACTTTAGCTTTCTCTATATCATG CCAATTCGCGATGAAGTCACGCATATGTATATGAAGACCAGTTCCATTAG GCCATACTTTCCGAGATGTATCGGTGAAAATATAGGTTTTGCCTGTTGAA CAAGGTACTTCTAAACTTCTTAATGCTTTGTACATATTTGCATGATGCGG ATAAGGAATTTGTTTGACTAGCACTTGAGCGGCAAATTTTACCAAATCGA TTTTAcccatattttcaaaattaggTGCTACTGTATATAGGTTCACCATT TCTTTCAGCTTCTCTTCCGTTTCATGAAACTTGTTTGTCATTATTTCCAG TTCATCCTTCATCACTTTGTTCTCAACTGTCAATTTTTGAGGTGAACCGC CCTCTTTTATTTTGTCAGCTTTCAAAAGTTCATATTTTGTTTCCATTTCA CGCTTTTCTTCTCGGCACTTCAAAATATCCTTTGAAAGTTTTTCCATCTC GAGGTTAATTTCATTTCCACTGCTTCGCtttaattcttcattttttgctt ttaaagCTTTCACATCTTGCTCCAATGTCATTTTCTCCGCAATCAAGACA TCCTTTTCAATACCAAATTGTTTCTCAGCTTTCAGTAGAGCATTCTCTGa tcttaattttaaaatttcgttttcaTTACGTAACTggttaatttcatttt caagcttTAATTTAAGATCcttaatttcattttcctttttcaaattGTAA TTTTCAAGTCTCAATTTTCCCATGTCGTTTTGCATTTTCAAATGTTTGAT TTCTTCTTTAAGCAGGTTAGCTTCATTACCGTTGGAGTTCGTATCCTTAT GTAAATCTCCACGAGCTCCGGCAGCATTTTGTGGATCAAGTATCCTTTCG CTGTGGGCATTGTTCATTCTCCAATCATCAACGTCAATCTTTTTTTGTGA TGCCATCGTTACATTTACTTGAAATCCAACAAAAACAGAATTTTATCTAT ATGAAATGACATGACAAAATAGTTATGGTACAAATAATAAAACCATGGAC ACATCTAACCAACAGACAAAGCAGATAACATGAAAGTAGGtcaaatacag gaacgaaaggAATCTAGTTACAAAGGAATCTAGTTACATTTACATTCAGG TTTCAAACTGCTAAATTTACCAATAAAGAAAAACTCACATCACTATCTGT AATAGTAATCActgcttaaccctttaagtgtcaATATCGAGTATATTGGA CATGgactatataggagggcgaggtctaactcgtaggaattggattgtgc ttcatggtcaagcaaataaaaaaattcaaaaatgcaaaagcgagatttta agccaaaatcaaaaaaatacaaaggaaccaaggaacaagtgtgcaagatt tcagccaaattcgaccatttttgaaatctccagcctgccctaaagttttg aagtgacagacagacacacatgGACTGATACACATAGACTGACagactta tctgatattccgatggcggattaaCGGCCACccacacgctaaagctctaa aggagcgggccaattttccatcggagaggaataataatcggcctttgatg tgccgcatccccagtcAGGGTCAACTACCCTTGCacttaaagctaaaaat atttcggttggacctgCCAATCCCTAAAAACGAGGgatgggttaccagac ctcccgcagCAAAACCCTTGACGCAGTCTTGCAAAGTTCCGTAATGTAAA CTTTCCAgatgttgaatttttttccttcagTGTTTAGCGtatcggatgaa aatttcaccatctgtcAGATAACTGACAGAcggacattctcagattctag ctcaactgaaattGAAAATACCTCTTCAACTCTATATTCGACGgcggatc gagacaaaaataaaattagatGCTAGAATAAATTCCTAACATTTTTAAAT CCAAAGTTGAAATCAACCCATTGATTGTAGTGAGTATTCAAGACAtttgt tcattcattcatttattcattcattcattggATTgattagtgtttttttt ttttgtttcattcattattttttcgatctataaataaaagaatgaaTAAA ACtacagaaaattaattttaggtTTAGTTTTGTAACCCTAAAATTTATTC ACAAATACAAATCGAGAAAACCCCCTTGAACTTTTTCTCTCATTGGGGAT GAAAATGTCTGTCGAAATcgcaatggggatagaaaatctattgtttccag tcGCAGTGGGGATGGTCCccggatggttttgaagtgcaatttttcccaTT GAACTTCCATTGGGGACAAAATCATAgggcaatttcccagtggggttgaa attttaggtattttttccaccggggacgatttctttgccaatttttccaa tggggCGGGGGGAGGTTCTATAGGGGgtgagaaagaaagaaaatatggGT ACAATGACCAGACAAGAGCATCAAAAGTTCAAATTCTTTTTAGCTTGCTT GAAattgttttataaaaaatacacTACATGGTAAAAAACTAAAGGTTCGt cggaaataaaaaaatacagttAACCCTCACTAACTCGAACGGGAAGTCTG ATtagttcaaattacagagagattcaaattatagagcGTATTGAGGGTTT TCTTTTCACGGGAACTGATAATTAGTTCGAGTTACAGAAAGATATGAATA ATAAAAGTTCGAATTGACAATAGTCAAAAGTATTAAAAATAAGCTCACTT GTAGCTGAAGGTAAGAAAATTTCGGCAAATAAttaaatttgcaaattttt ggacaacttattttggcgaatcaagaaaattttcaaatttgaggAGAATT ATTTTTGGCGAATGACCCGTTGTTTGGTAGCATTTTAGCTGAAAAGGGAG GAATTAAAACGAAATATCATTCATATTTGGCAATAGTTaaaattttcgaa taaaaaaaaaatctaaattgagaggtattaaattttggccagtttggcta aattttaaggcaattcaccaaattttcttcccttaTTAAAGTAACTAATA AACTTAATGGAATTCCGCAAAAAGCTTTTTCTTTGCGAGCACCAAAAAAT AAAGaccttttgtatttttcacaTTAACTGCAAAGTCATAATTGATTTCT AGATTCCAAAGTCCCTCTTCGCAGCGTTTTTCTAAGACGATGGATTTACG GTTATCAGTTGGGTGAAGAATTCTAACACACTTGATATCATTCCAAATTT TTCGTAAACGGTCCCGCAAGTTTAAATGATGAACACATCCGTCCGGTAGA AGAATTTTCGACGAAAATGCCAATCTGAAAATTAATACTTCTCCTGCTGT TCGACCACTAATTAAATCGTAATTCAAAGCCTGGAACATTTTCTCGTAGT GTGGATAGTGTTCTTCCTTATCGAGAACATAAAGAGTAAATTCCACCAAG TCGGGAAAAGGTGTTTTCATAAAATCGGGTACTAATTTGGCCGATTTTTG TGATGCTATTTCCAATTCATCAAGTGTGTTTTTTGTTATTTCTAGCTCAT Cttttaatcttttattttcaaccatcaaattatcaattttttgatcaaat ttatGGATTTCACATTCCATGATTCCattgttttttgcaatttcacgatt ttcgttttgaaattttaaaatttcagcgTGGGATTTCTTCATTTCAATTA TACGTTTTTCAATATCATCTCTCTTGTTTTCTTTCAATTCTTCATTTTCT GCTTTTAAAGTTTTTACATCTTGCTCCAATGTCATTTTCTCCGCAACCAA AACATCCTTTTCAATACCAAATTGTTTCTCAGCTTTCAGTAGAGCATTCt ctgacgtcaattttaacATTTCAATGTCCTTTCGCAACTCCTTTACTTCA TTTGCTTTCTCGAAAACATCACTTTGAAGTTTTGATTTCAATTTCTCGAA GTCACAATATTTCTTCAGATTGTCATTTTCCATTCTCAGTTTATCCATTT CATATTGAGTTTTCAAGTTCTTGATTTCTTCCCTGAGGAGGTTCACTACA CTATCAACATTACCAACTACCCTAACTGAATCTATTTCTTGATTTGAATC TTCTCAGAATCCAGCAGCATTTTGTTGATCAATCTTTNCATTTCTTGATT TGAATCTTCTCGGAATCCAGCAGCATTTTGTTGATCAATCTTTCTCTCAC TGTGAGCATTATGTATTTTCAGATTGTCGTTTTGAATTTGTGATGCcatt gttaaaaagataatgtTCACACATACAGTAGTCTTACAGAGAAGGTCTGC AAAACATTTTGAGCATGAAAACTTGTACGATATCTGCGTTTATTTGCAGT GCAAGTGTGAAAATATCGAACCAACAGGCAGTATATTAAAACACTGGAAA CAGAACTTCTTTCATTCACACCATTGTAGTCCAGTAGAATTTTGAGTCGA CCtagaaaaaatttgttgttgaCATCGAAAGCAAATGGATCAAACCAGAC TGtgttaaaacaataaaaagcaAGCAGTTTAAGCCCCTGATTTTTTTGGG GGTGCCAAAAGAACAGTGGTGCCAAAAGACCACTGGTACCAAAAGACCAA GGATGCAAAGAGGCGTCCCTGATTACAAATTTTTCGGCGCCTCTTTggta atttaatttgttttctaGTAAATACTTTCATAAGAGCAAGAAGCGAACTT TTAAGAAAACTACAGTATGTATCAAAAATTACCACGGCGAAATCAAACTA CTAAAAATGCCAGGAAAAATTAACAATAAATAAAccaatattgacaacaa attaTCACCGATCTACCACTACCAGACCATTCATTTATCGACTagatcca tgtatctatatagcATTGATAACTCCaatcatattttttattttcccttt tttaaatatactttTTTGATTCTGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028193TCONS_00028193Clytia hemisphaericatranscript
TCONS_00028194TCONS_00028194Clytia hemisphaericatranscript
TCONS_00028195TCONS_00028195Clytia hemisphaericatranscript
TCONS_00028196TCONS_00028196Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:96424..102198 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.15 3.46 1.11 2.51 1.8 2.69 4.06 2.86 2.11 2.08 1.9 2.94 1.39 2.52 1.55 2.44 1.95 3.13 2.73 3.75 3.31 3.91 4.33 6.15 2.74 5.18 5.14 2.83 2.37 4.61