|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028194 ID=TCONS_00028194|Name=TCONS_00028194|organism=Clytia hemisphaerica|type=transcript|length=1444bp
catattttcaaaattaggTGCTACTGTATATAGGTTCACCATTTCTTTCA
GCTTCTCTTCCGTTTCATGAAACTTGTTTGTCATTATTTCCAGTTCATCC
TTCATCACTTTGTTCTCAACTGTCAATTTTTGAGGTGAACCGCCCTCTTT
TATTTTGTCAGCTTTCAAAAGTTCATATTTTGTTTCCATTTCACGCTTTT
CTTCTCGGCACTTCAAAATATCCTTTGAAAGTTTTTCCATCTCGAGGTTA
ATTTCATTTCCACTGCTTCGCtttaattcttcattttttgcttttaaagC
TTTCACATCTTGCTCCAATGTCATTTTCTCCGCAATCAAGACATCTTGCT
CCAATGTCATTTTCTCCGCAACCAAAACATCCTTTTCAATACCAAATTGT
TTCTCAGCTTTCAGTAGAGCATTCtctgacgtcaattttaacATTTCAAT
GTCCTTTCGCAACTCCTTTACTTCATTTGCTTTCTCGAAAACATCACTTT
GAAGTTTTGATTTCAATTTCTCGAAGTCACAATATTTCTTCAGATTGTCA
TTTTCCATTCTCAGTTTATCCATTTCATATTGAGTTTTCAAGTTCTTGAT
TTCTTCCCTGAGGAGGTTCACTACACTATCAACATTACCAACTACCCTAA
CTGAATCTATTTCTTGATTTGAATCTTCTCGGAATCCAGCAGCATTTTGT
TGATCAATCTTTCTCTCACTGTGAGCATTATGTATTTTCAGATTGTCGTT
TTGAATTTGTGATGCcattgttaaaaagataatgtTCACACATACAGTAG
TCTTACAGAGAAGGTCTGCAAAACATTTTGAGCATGAAAACTTGTACGAT
ATCTGCGTTTATTTGCAGTGCAAGTGTGAAAATATCGAACCAACAGGCAG
TATATTAAAACACTGGAAACAGAACTTCTTTCATTCACACCATTGTAGTC
CAGTAGAATTTTGAGTCGACCtagaaaaaatttgttgttgaCATCGAAAG
CAAATGGATCAAACCAGACTGtgttaaaacaataaaaagcaAGCAGTTTA
AGCCCCTGATTTTTTTGGGGGTGCCAAAAGAACAGTGGTGCCAAAAGACC
ACTGGTACCAAAAGACCAAGGATGCAAAGAGGCGTCCCTGATTACAAATT
TTTCGGCGCCTCTTTggtaatttaatttgttttctaGTAAATACTTTCAT
AAGAGCAAGAAGCGAACTTTTAAGAAAACTACAGTATGTATCAAAAATTA
CCACGGCGAAATCAAACTACTAAAAATGCCAGGAAAAATTAACAATAAAT
AAAccaatattgacaacaaattaTCACCGATCTACCACTACCAGACCATT
CATTTATCGACTagatccatgtatctatatagcATTGATAACTCCaatca
tattttttattttcccttttttaaatatactttTTTGATTCTGT Run BLAST on NCBI transcript from alignment at sc0000670:97531..102198+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028194 ID=TCONS_00028194|Name=TCONS_00028194|organism=Clytia hemisphaerica|type=transcript|length=4668bp|location=Sequence derived from alignment at sc0000670:97531..102198+ (Clytia hemisphaerica)
catattttcaaaattaggTGCTACTGTATATAGGTTCACCATTTCTTTCA
GCTTCTCTTCCGTTTCATGAAACTTGTTTGTCATTATTTCCAGTTCATCC
TTCATCACTTTGTTCTCAACTGTCAATTTTTGAGGTGAACCGCCCTCTTT
TATTTTGTCAGCTTTCAAAAGTTCATATTTTGTTTCCATTTCACGCTTTT
CTTCTCGGCACTTCAAAATATCCTTTGAAAGTTTTTCCATCTCGAGGTTA
ATTTCATTTCCACTGCTTCGCtttaattcttcattttttgcttttaaagC
TTTCACATCTTGCTCCAATGTCATTTTCTCCGCAATCAAGACATCCTTTT
CAATACCAAATTGTTTCTCAGCTTTCAGTAGAGCATTCTCTGatcttaat
tttaaaatttcgttttcaTTACGTAACTggttaatttcattttcaagctt
TAATTTAAGATCcttaatttcattttcctttttcaaattGTAATTTTCAA
GTCTCAATTTTCCCATGTCGTTTTGCATTTTCAAATGTTTGATTTCTTCT
TTAAGCAGGTTAGCTTCATTACCGTTGGAGTTCGTATCCTTATGTAAATC
TCCACGAGCTCCGGCAGCATTTTGTGGATCAAGTATCCTTTCGCTGTGGG
CATTGTTCATTCTCCAATCATCAACGTCAATCTTTTTTTGTGATGCCATC
GTTACATTTACTTGAAATCCAACAAAAACAGAATTTTATCTATATGAAAT
GACATGACAAAATAGTTATGGTACAAATAATAAAACCATGGACACATCTA
ACCAACAGACAAAGCAGATAACATGAAAGTAGGtcaaatacaggaacgaa
aggAATCTAGTTACAAAGGAATCTAGTTACATTTACATTCAGGTTTCAAA
CTGCTAAATTTACCAATAAAGAAAAACTCACATCACTATCTGTAATAGTA
ATCActgcttaaccctttaagtgtcaATATCGAGTATATTGGACATGgac
tatataggagggcgaggtctaactcgtaggaattggattgtgcttcatgg
tcaagcaaataaaaaaattcaaaaatgcaaaagcgagattttaagccaaa
atcaaaaaaatacaaaggaaccaaggaacaagtgtgcaagatttcagcca
aattcgaccatttttgaaatctccagcctgccctaaagttttgaagtgac
agacagacacacatgGACTGATACACATAGACTGACagacttatctgata
ttccgatggcggattaaCGGCCACccacacgctaaagctctaaaggagcg
ggccaattttccatcggagaggaataataatcggcctttgatgtgccgca
tccccagtcAGGGTCAACTACCCTTGCacttaaagctaaaaatatttcgg
ttggacctgCCAATCCCTAAAAACGAGGgatgggttaccagacctcccgc
agCAAAACCCTTGACGCAGTCTTGCAAAGTTCCGTAATGTAAACTTTCCA
gatgttgaatttttttccttcagTGTTTAGCGtatcggatgaaaatttca
ccatctgtcAGATAACTGACAGAcggacattctcagattctagctcaact
gaaattGAAAATACCTCTTCAACTCTATATTCGACGgcggatcgagacaa
aaataaaattagatGCTAGAATAAATTCCTAACATTTTTAAATCCAAAGT
TGAAATCAACCCATTGATTGTAGTGAGTATTCAAGACAtttgttcattca
ttcatttattcattcattcattggATTgattagtgttttttttttttgtt
tcattcattattttttcgatctataaataaaagaatgaaTAAAACtacag
aaaattaattttaggtTTAGTTTTGTAACCCTAAAATTTATTCACAAATA
CAAATCGAGAAAACCCCCTTGAACTTTTTCTCTCATTGGGGATGAAAATG
TCTGTCGAAATcgcaatggggatagaaaatctattgtttccagtcGCAGT
GGGGATGGTCCccggatggttttgaagtgcaatttttcccaTTGAACTTC
CATTGGGGACAAAATCATAgggcaatttcccagtggggttgaaattttag
gtattttttccaccggggacgatttctttgccaatttttccaatggggCG
GGGGGAGGTTCTATAGGGGgtgagaaagaaagaaaatatggGTACAATGA
CCAGACAAGAGCATCAAAAGTTCAAATTCTTTTTAGCTTGCTTGAAattg
ttttataaaaaatacacTACATGGTAAAAAACTAAAGGTTCGtcggaaat
aaaaaaatacagttAACCCTCACTAACTCGAACGGGAAGTCTGATtagtt
caaattacagagagattcaaattatagagcGTATTGAGGGTTTTCTTTTC
ACGGGAACTGATAATTAGTTCGAGTTACAGAAAGATATGAATAATAAAAG
TTCGAATTGACAATAGTCAAAAGTATTAAAAATAAGCTCACTTGTAGCTG
AAGGTAAGAAAATTTCGGCAAATAAttaaatttgcaaatttttggacaac
ttattttggcgaatcaagaaaattttcaaatttgaggAGAATTATTTTTG
GCGAATGACCCGTTGTTTGGTAGCATTTTAGCTGAAAAGGGAGGAATTAA
AACGAAATATCATTCATATTTGGCAATAGTTaaaattttcgaataaaaaa
aaaatctaaattgagaggtattaaattttggccagtttggctaaatttta
aggcaattcaccaaattttcttcccttaTTAAAGTAACTAATAAACTTAA
TGGAATTCCGCAAAAAGCTTTTTCTTTGCGAGCACCAAAAAATAAAGacc
ttttgtatttttcacaTTAACTGCAAAGTCATAATTGATTTCTAGATTCC
AAAGTCCCTCTTCGCAGCGTTTTTCTAAGACGATGGATTTACGGTTATCA
GTTGGGTGAAGAATTCTAACACACTTGATATCATTCCAAATTTTTCGTAA
ACGGTCCCGCAAGTTTAAATGATGAACACATCCGTCCGGTAGAAGAATTT
TCGACGAAAATGCCAATCTGAAAATTAATACTTCTCCTGCTGTTCGACCA
CTAATTAAATCGTAATTCAAAGCCTGGAACATTTTCTCGTAGTGTGGATA
GTGTTCTTCCTTATCGAGAACATAAAGAGTAAATTCCACCAAGTCGGGAA
AAGGTGTTTTCATAAAATCGGGTACTAATTTGGCCGATTTTTGTGATGCT
ATTTCCAATTCATCAAGTGTGTTTTTTGTTATTTCTAGCTCATCttttaa
tcttttattttcaaccatcaaattatcaattttttgatcaaatttatGGA
TTTCACATTCCATGATTCCattgttttttgcaatttcacgattttcgttt
tgaaattttaaaatttcagcgTGGGATTTCTTCATTTCAATTATACGTTT
TTCAATATCATCTCTCTTGTTTTCTTTCAATTCTTCATTTTCTGCTTTTA
AAGTTTTTACATCTTGCTCCAATGTCATTTTCTCCGCAACCAAAACATCC
TTTTCAATACCAAATTGTTTCTCAGCTTTCAGTAGAGCATTCtctgacgt
caattttaacATTTCAATGTCCTTTCGCAACTCCTTTACTTCATTTGCTT
TCTCGAAAACATCACTTTGAAGTTTTGATTTCAATTTCTCGAAGTCACAA
TATTTCTTCAGATTGTCATTTTCCATTCTCAGTTTATCCATTTCATATTG
AGTTTTCAAGTTCTTGATTTCTTCCCTGAGGAGGTTCACTACACTATCAA
CATTACCAACTACCCTAACTGAATCTATTTCTTGATTTGAATCTTCTCAG
AATCCAGCAGCATTTTGTTGATCAATCTTTNCATTTCTTGATTTGAATCT
TCTCGGAATCCAGCAGCATTTTGTTGATCAATCTTTCTCTCACTGTGAGC
ATTATGTATTTTCAGATTGTCGTTTTGAATTTGTGATGCcattgttaaaa
agataatgtTCACACATACAGTAGTCTTACAGAGAAGGTCTGCAAAACAT
TTTGAGCATGAAAACTTGTACGATATCTGCGTTTATTTGCAGTGCAAGTG
TGAAAATATCGAACCAACAGGCAGTATATTAAAACACTGGAAACAGAACT
TCTTTCATTCACACCATTGTAGTCCAGTAGAATTTTGAGTCGACCtagaa
aaaatttgttgttgaCATCGAAAGCAAATGGATCAAACCAGACTGtgtta
aaacaataaaaagcaAGCAGTTTAAGCCCCTGATTTTTTTGGGGGTGCCA
AAAGAACAGTGGTGCCAAAAGACCACTGGTACCAAAAGACCAAGGATGCA
AAGAGGCGTCCCTGATTACAAATTTTTCGGCGCCTCTTTggtaatttaat
ttgttttctaGTAAATACTTTCATAAGAGCAAGAAGCGAACTTTTAAGAA
AACTACAGTATGTATCAAAAATTACCACGGCGAAATCAAACTACTAAAAA
TGCCAGGAAAAATTAACAATAAATAAAccaatattgacaacaaattaTCA
CCGATCTACCACTACCAGACCATTCATTTATCGACTagatccatgtatct
atatagcATTGATAACTCCaatcatattttttattttcccttttttaaat
atactttTTTGATTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028194-exon-sc0000670-1491911889:97531..97872 | TCONS_00028194-exon-sc0000670-1491911889:97531..97872 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1510915933:97531..97872 | TCONS_00028194-exon-sc0000670-1510915933:97531..97872 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1575043694:97531..97872 | TCONS_00028194-exon-sc0000670-1575043694:97531..97872 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1491911889:101041..101356 | TCONS_00028194-exon-sc0000670-1491911889:101041..101356 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1510915933:101041..101356 | TCONS_00028194-exon-sc0000670-1510915933:101041..101356 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1575043694:101041..101356 | TCONS_00028194-exon-sc0000670-1575043694:101041..101356 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1491911889:101413..102198 | TCONS_00028194-exon-sc0000670-1491911889:101413..102198 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1510915933:101413..102198 | TCONS_00028194-exon-sc0000670-1510915933:101413..102198 | Clytia hemisphaerica | exon |
| TCONS_00028194-exon-sc0000670-1575043694:101413..102198 | TCONS_00028194-exon-sc0000670-1575043694:101413..102198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:97531..102198 + |
Blast
The following BLAST results are available for this feature:
|
