XLOC_016476 (gene) - C. hemisphaerica

Overview
NameXLOC_016476
Unique NameXLOC_016476
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000719:25855..31603+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016476 ID=XLOC_016476|Name=XLOC_016476|organism=Clytia hemisphaerica|type=gene|length=5749bp|location=Sequence derived from alignment at sc0000719:25855..31603+ (Clytia hemisphaerica)
gcccccgcaacgagcgtagcgagtgaggaggccttcatagcttcacgcaa
ggatattggacaggaatctcgaatctttgcgcgcGCGCGCGTTTGTTAGT
ATTGTATGTTCCGGCCAATTAATATGGCAAAATATTGGCACATCAAATAC
GGCAAACCTAGTTTCTAAACATTaaacttatatttttcaaattaaaagca
GTACCGTATGCAACGCTTATCACTCCAAATCAAATAAACCCATATAAAGC
TATCATAAACCTAGATGAAGTGAACTTAAACTAGGTTTCCAGACGTAAAA
CCAGGTTTAATGTTATAAAACCAGGTTTCATGTTATTTTCGAGTTCACGT
GCGTGCTAAAAATGGTAGCTCATTCTATAAAGGTTGTGAGGGGTGAGACT
ATGGCCGACGAAAACGACACCAATTCATCAGGCCATTCTTCGGCGATTTA
TCCCTCGTAAGTTCACAAATATTTTCTTGCCCAGTTTGTGGTTTGATTTA
CGTGGTCGTGGTACATGACGAATTGTGAGTTTGAGTAAAACATTTTTCAC
AGAATAACAGCACATAGTTTTATACATAATAGTTTATTCTTCTAACTTAA
AATGATAAACAAACAGCAATTTTCCTCTGGATCATTATAGAAATACAAGC
CAAGACATAGACCTGTACTATTATTCTACCATATGTATATAATCACAATC
AAATGTTAAAACCAGCGAGCTGTAAACATTATTGGAGTACGAACTTGAAA
GCTTACGTAATCTATTTCTATTATGTCAATTGAAGAAATAcactattgat
taaaagcgtCCCTTTAAATAAGGGGTAAACGTATCATCTGTGAACTTCTT
ATAAATCCAGTGAATCCTGTTTTTTTCGGGTTTTCCAGAAGAAATGAGGT
TTAGACTCTCCTTCGaattccaaagttttgagagcAGTTAGGGGAAAGTA
ATTTAGCATAGATGTGGAGGAGGGTGTCTTCTttggtgaaaacaaaaaat
caaacagaAAGCGTGGCTAGAACAGAAGATATTTGGGGTTTTctctgaaa
ttttattgtttttttgaatGTTATGATTTTGTGAGTTTGAGAAGAGATGT
GTTGCgtctcaaaaaatggtgaaagtaGAATAATTTTACTGCCTAGTGCA
TTTTATTTGAAGACTTAATATCTTCTCAAACTTTttctaaaggttttttt
ttactttatatttGTCGACGAGAATCGGGGAAATCGTCGCCATCTCTGGC
CatcttgttttcttttgttttgctgTTATAAGGGATAAGAACATAACTAT
TACTATCAATCCTGATCCTGTATAGCATATGATGTGTTTGCTTCTTTCAG
CAAAATATAAAAGCTATAACGAAAATTAACAGTATAATTTGAATTTGCGA
TGATTTTGTGCTGTTGTCTTGGTGGTGTGATGTGGTTGATAACATCATAC
AATCGTAATGTTTATACAGCCGAGTCTGTTATCGAAAGGCAATATGACTT
AATATCTTGAATGAGAAGGGTTCGGTTTGTACTATATCACGTGTTGATGG
GTATATacagtcgaaaaaaaataaagtcgAAATGTTATGAAAACAAGTTC
TTCTCTGGAGAATATTGAATGTAGACTAAGAAGAAGATTAATGCAACCCA
TATAGGTTGTCCTATAAATGTTATGGAGGGCTTAAAACAGAGTATGTTTT
TTGGATGGGATGGACTTTATGCAGAATTATAAATTTAACTTCTTAGTGTT
CAACATTAATACTATATTCTCTCCAAGACCTCCAAAAGATTAAGAGCTTA
TCTGAAACTCTTATCAACAGAAAATCCATCGCTGGTATATATTTGTAGCA
GATATCACACTTTGGCAATTTCATCTACAGTATCATTTAACAATTATATT
GTAAATTTGGCATTTGaatgtaaattttaaaaactttaaaagcaTATTGT
TTAAATTCAGAATTGACCAAacctttttgagaaaaataatttttttcctg
ataaatttcccttgtttttcTACTGTCTTTACAACGGGCTGCTTTTTATC
TCTTTCTCTCTCTGTTTTTTGTACACAACAATTTATGACTTTCGTTAAAA
ATCTGCTCACGTGatcaaaatcaaccaatcatATCGTTAAGATTTCATAA
TAGAAGAGAGCAAACAGCGGCAAACATGAAAGGCAAAGATCAGATATGGG
CGCGCGTTGTTTCTATAGGTTCATACTCCAACAATGTTTACAGCTCGCTG
TTAAAACCAAACAAATTATAAATTTAtctctaaaaatgttttttttttat
tgcagATTGCCTGATGATTTTGAACAAAATGTGGAGCTACTCTACAATGA
TGTTGCATCAATTCGTACATTTGCCAGCAACAAAAGACAAGGAGGTAAGA
ATATATATTTCACTAACCATCAAGACCCATTTTTTTCAGTCTAGGACTGT
ATTTAATTAAGAGACAACCCTAACTAAGTGTGTCCGTTTATTAAAAGACA
TTGATTAAAATTGTGTCCCTACTAAATTAAAGGACAGTCTCTACAGTAAA
TCAGTTCGGCAAATTGCATAGAATGACAGCGCTGCATAATTCCACAGCTT
TAGCGCTGTCGAATTCTGCAGCGTTGTCTAATATCGCAGCTTTAACCATT
GTCAAATTTGACAACGCTTCTCTTTTAACCAAGAACGGGGTCACAGGGTG
TGTTTTTAGAGTCAGGGTCAATTAACATAATACATATATGATAAAGATAC
AATATAGCATATTATTCTTACGGGGTCTCGAAATCATGTGTATTTTGTAG
GATCCAAAAGTAAGCTTTTCACCCCAGGATTTTAATTTCCTACGTCTAGG
GATTTTTCACAATCATCCTTGGCAGTAAGGCCACTTTGTCCGAAAAACCG
TTAATTTGTTCAAAATAGAGAAGTTTTGCCTGATTTTGCTTGTTGTGATT
GTACAAAAGAGGTCCAATTATTTATAATTCTCAATCAGAAGTTTTGATTG
GAAGCGTTGTGTAGAATAGCAGCACACTTGTTGCATTTCATGTGGAAGCG
TTGCAAAAAACAGCAGCATTGCAGAATTTTGCAGCGGCTGTCATTCAATG
CAACTTATGCCGAACTGAAATTAAGGGACAGGCACGTACAAATCTAGAGA
TATTTGCAGTTTAGTCCAGGTGAATCGAACAGTTCAATCATCGAGATAAT
CCAATTTTATTGGACCCGATTCAAATAGAATGATAGGTGTTTGATTACCC
AAAACAACCtctgtgtttttatttttagtaaaaCTCTTTATGGGTCAAAT
TCCAGTGTTTTCAGGTGTTTCCGAAATGAtgtaatcttgacttatgcata
tcaagaATAACTTACCAAACTCATCGAATACCAATCAAACCCCAttaaac
atcaatcgaactctatcaaatcaatcgaactctatcgaaccaatcaaacc
tcttcaaacaaaaaaacagtGATCGAACCAAGcaagaaattttcgtaaaa
ttcaataggtgttcgattgggttcggtaatcgaacaccTATCATTCCATT
CTGTTCGTAATCGATAAAGTTTGATGTTTCAATTACAAAAatcggttcga
tagggttcgatcAACATCGCCTGGTTAAGTTTTTTGTCCCTTACTTAACC
TTAAGAGACAGAGTGTCCTTTAATTTAGAGACTGTCCCTTAATTTGAATA
TGTCCCTTAATTAGGTACAGTTCTAGACTGTTTTAGCACTTTACTTTTTA
CCCGATATACGAAAATCATTATAGCTGTGTTCACAATATTCCCAAATGAA
CCAGACAATTTTTACCTCGTTTACCAGCGTTTACTCCCTTAAGGAACTCA
TTTTTGCATGACTTGTTTTTGTATCTCACAGACATTTTTAAAGCTTATCA
AATACAATAAAGGATTATACCCTAAAATAAGagaatacccaaaatgtgat
gACCTTGTGTGGGAAAAGAATCACTTTTGATTTCTACAGAAAATGTGTCG
ATCCATTTGANAATTTTTAAAGCTTATCAAATACAATAAAGGATTATACC
CTAAAATAAGagaatacccaaaatgtgatgACCTTGCGTGGGAAACGAAT
CACTTTTGATTTCTACAGAAAATGTGTCGATCCATTTGATTACCAATAAC
TTTATAGATCTTACCGATAAGAGTAGAATTGTTTACTAATAGAATGGTTT
GTATGGATAAGAAATTTATATCAGTAACTGTTTTTAGACATGTATCAAAT
TCAAGGGAAATTTGAATGAATTTGATTGATTTTGGCTGTATTTTATTCAA
TTGATATCTACATACATCACATATGATACATCACATTATTTGAAATTATA
TTGTTTATCAGTCTGTCAGGTTTAATTTGATTTCTATTTATTTCAGGGCC
AAAGCAAAAGGGTAGCAAGACCAAGAAGAAGAAAGGGCCTAAACCATCGA
CAGTTAAGCTAAAGATTTATCATTTACCTCCTGGGTCAGCCAAGCCTAAA
TTTTCAAAACCAGATGAAACAGTACACTTACACATGAGATGTGGTTATGG
TAAGCTTAAGTTTTTTCAAATTTTGAAATTATGTGGGAGCTGCTTATTAA
TCTAAGTACCACTAGATAATTGAAGTAATGTCATTTTAATAAAAGGTTTG
ATTTTGATAAATTCATAATTATTTCATCGAAACTTTGAGCGTGGTTTTTA
TTATTTGCTGACTTGTATAATtttcgaagtttgaaaattttcgaaaatcg
atcATTACAgatgggttggtgtaatttaagatgcgcGATCTAACGGTTTa
tgatttacgatgcacgatccacatgcataaagtatgctgattattcctaa
taaatGTCATGAAACTTATACAACAATTCTAAAACAACGGCAtaattttt
tctcgattttgttTGCCACGGTAAATTGTTTGCCACGGANTCATTACAga
tgggttggtgtaatttaagatgcgcGATCTAACGGTTTatgattcacgat
gcacgatccacatgcataaagtatgctgattattcctaataattgtCATG
AAACTTATACAACAATTCTAAAACAACGGCATAAttttttctcgcttttg
tttgccacggaaaaaaaaaattgcagtGCTATTTTGGCATATGCAAAGTT
TTGTTCATTGCCAGGCCTGTAATTGAGCTTCAacgaatgaaagtttgtaa
actctctaaatattttatcatgattagcataattGGGGCATAATTAtaca
tgaattaacatattttatgcatggATTGCGAATTGTGCATCGTAAATCAT
TAGATTGTGCATCTGAAATTACACCAACTCATTACGGATGTGACATGTTT
TGAGTGTTCAATTCGTATCAACTTTGACTGATTAAATACCTGTTTTTAAA
AGCATAAtctctttcaaaaatatttttgcgaaAATAAGCATTTGACAAGC
ATATTCAAGCTTCATTCCAAAGTAAGAATAAGCATAACCAAGTTTAAGAA
GACTGTATGCGTATAAAAACATGTACTcacaatttttgtgattttcttag
GATTCTAAAATTCAATTCATTAAAAGTTTTGCCATTTAATAAAGTTATAT
ACTTCAGTAATTAAACTGTTCTACTAATTTAGACTGGTTTgtatatcttt
tttttctttgtcatttcaATTCAGGATTTCCAAAACAATGTTACCAAGTT
GGTGGTAATGGCAAAGTAAAATTCACATCACTACCTCTGGGTGTGGACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028988TCONS_00028988Clytia hemisphaericatranscript
TCONS_00028989TCONS_00028989Clytia hemisphaericatranscript
TCONS_00028990TCONS_00028990Clytia hemisphaericatranscript
TCONS_00028991TCONS_00028991Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028989-proteinTCONS_00028989-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000719supercontigsc0000719:25855..31603 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3	0.81	1.18	0.81	7.67	6.05	12.22	11.97	6.37	5.25	6.02	7.2	4.13	2.25	3.33	3.59	2.29	2.94	3.43	3.57	4.05	3.68	3.19	3.64	2.57	2.83	7.23	5.91	16.37	16.21