TCONS_00028988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028988
Unique NameTCONS_00028988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028988 ID=TCONS_00028988|Name=TCONS_00028988|organism=Clytia hemisphaerica|type=transcript|length=851bp
gcccccgcaacgagcgtagcgagtgaggaggccttcatagcttcacgcaa
ggatattggacaggaatctcgaatctttgcgcgcGCGCGCGTTTGTTAGT
ATTGTATGTTCCGGCCAATTAATATGGCAAAATATTGGCACATCAAATAC
GGCAAACCTAGTTTCTAAACATTaaacttatatttttcaaattaaaagca
GTACCGTATGCAACGCTTATCACTCCAAATCAAATAAACCCATATAAAGC
TATCATAAACCTAGATGAAGTGAACTTAAACTAGGTTTCCAGACGTAAAA
CCAGGTTTAATGTTATAAAACCAGGTTTCATGTTATTTTCGAGTTCACGT
GCGTGCTAAAAATGGTAGCTCATTCTATAAAGGTTGTGAGGGGTGAGACT
ATGGCCGACGAAAACGACACCAATTCATCAGGCCATTCTTCGGCGATTTA
TCCCTCGTAAGTTCACAAATATTTTCTTGCCCAGTTTGTGGTTTGATTTA
CGTGGTCGTGGTACATGACGAATTGTGAGTTTGAGTAAAACATTTTTCAC
AGAATAACAGCACATAGTTTTATACATAATAGTTTATTCTTCTAACTTAA
AATGATAAACAAACAGCAATTTTCCTCTGGATCATTATAGAAATACAAGC
CAAGACATAGACCTGTACTATTATTCTACCATATGTATATAATCACAATC
AAATGTTAAAACCAGCGAGCTGTAAACATTATTGGAGTACGAACTTGAAA
GCTTACGTAATCTATTTCTATTATGTCAATTGAAGAAATAcactattgat
taaaagcgtCCCTTTAAATAAGGGGTAAACGTATCATCTGTGAACTTCTT
A
Run BLAST on NCBI

transcript from alignment at sc0000719:25855..26705+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028988 ID=TCONS_00028988|Name=TCONS_00028988|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000719:25855..26705+ (Clytia hemisphaerica)
gcccccgcaacgagcgtagcgagtgaggaggccttcatagcttcacgcaa
ggatattggacaggaatctcgaatctttgcgcgcGCGCGCGTTTGTTAGT
ATTGTATGTTCCGGCCAATTAATATGGCAAAATATTGGCACATCAAATAC
GGCAAACCTAGTTTCTAAACATTaaacttatatttttcaaattaaaagca
GTACCGTATGCAACGCTTATCACTCCAAATCAAATAAACCCATATAAAGC
TATCATAAACCTAGATGAAGTGAACTTAAACTAGGTTTCCAGACGTAAAA
CCAGGTTTAATGTTATAAAACCAGGTTTCATGTTATTTTCGAGTTCACGT
GCGTGCTAAAAATGGTAGCTCATTCTATAAAGGTTGTGAGGGGTGAGACT
ATGGCCGACGAAAACGACACCAATTCATCAGGCCATTCTTCGGCGATTTA
TCCCTCGTAAGTTCACAAATATTTTCTTGCCCAGTTTGTGGTTTGATTTA
CGTGGTCGTGGTACATGACGAATTGTGAGTTTGAGTAAAACATTTTTCAC
AGAATAACAGCACATAGTTTTATACATAATAGTTTATTCTTCTAACTTAA
AATGATAAACAAACAGCAATTTTCCTCTGGATCATTATAGAAATACAAGC
CAAGACATAGACCTGTACTATTATTCTACCATATGTATATAATCACAATC
AAATGTTAAAACCAGCGAGCTGTAAACATTATTGGAGTACGAACTTGAAA
GCTTACGTAATCTATTTCTATTATGTCAATTGAAGAAATAcactattgat
taaaagcgtCCCTTTAAATAAGGGGTAAACGTATCATCTGTGAACTTCTT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016476XLOC_016476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028988-exon-sc0000719-1491911889:25855..26705TCONS_00028988-exon-sc0000719-1491911889:25855..26705Clytia hemisphaericaexon
TCONS_00028988-exon-sc0000719-1510915933:25855..26705TCONS_00028988-exon-sc0000719-1510915933:25855..26705Clytia hemisphaericaexon
TCONS_00028988-exon-sc0000719-1575043694:25855..26705TCONS_00028988-exon-sc0000719-1575043694:25855..26705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000719supercontigsc0000719:25855..26705 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240924	0.310419	0	0.489717	0.450294	0.395914	3.46342	1.71897	3.18361	2.82939	2.88419	4.44558	0.755668	1.07095	0.621575	0.710329	0.336646	0	0.411208	0.203704	0.854808	0.398648	0	0.464547	0.158282	0	1.06084	0.387446	0.558623	0.43744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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