XLOC_016544 (gene) - C. hemisphaerica

Overview
NameXLOC_016544
Unique NameXLOC_016544
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000724:114333..117821+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016544 ID=XLOC_016544|Name=XLOC_016544|organism=Clytia hemisphaerica|type=gene|length=3489bp|location=Sequence derived from alignment at sc0000724:114333..117821+ (Clytia hemisphaerica)
TAGCCTTCAAGAGGTACTTGAGACATATTTAGAATCCTAAATCATTATTT
ATTTTGTCTATCGTTCTTTTCCTGCAATAAAgtggatgtatttgcacaaa
atattttaaaactacTTCAACGTTTGCCACAGCATGATGTTTCTGAGGAT
ATGGTTTTTGGTTCTTACAGCAAATGCCATTTCAGTATTTGGCTACAGTC
TACAAAACAACGAGAGTAAGTTAAAGGATTTCTTCAGGTTAATAATATTT
CTGCGGTGAAGTACATACAGAGCTGATGTCCAAAATCTGATAAGTGTTTT
CTGACGGGATGGAGGTTATTGTACTTCAGTGACATAAACTAACTGAAATG
TGTAATCTCCAGTTCAAGATTATTCATCAAatatttggtgtttttttttt
tcaatgaaaattctttctcaaaaGTCAAGGTTTTAATCAATCGTGGTTTG
aaggggtttgcgatttccgaaataccgaataattttgctaaaatttccga
aattccgtaaaaaaatacttgcaattccgataccgatttttttggggtat
ttcccttcgttttgactaatttgtcatcaaatttgatttttcacgtacga
attccgaaaaagggggataaaaactttatgataccgaaattccgaagcaa
aaattcatgaatttctgataccgaaacaatttcagcattccgaaatactg
aaggaattttgcccgatttccgaaattctgaagaaaaaagggtcgatttc
cgcaattccaaAATACCGTACGCTGTCAACTTTGAATCTTTCACATGATT
TGAAATAAGAAATCAAAGTACCGAACAAGAATTCTTCCGgttataacacc
cctgtgtcacaaacaaaaatttccttaaaatcgcgaattttccgaccctt
agagagactttgaaaggtgaaaaaaccgaccttACCGTCCGCaaataccc
agcacccatttttggcTAAGTAGCCCCAGTGGGGTTAGAATCAATTAATG
CCATTGGTTTGTTCACATCTTAGATCATGCTAAAGTTTTCATATCGCAAT
CATCCCATTCCGAAGATGTCAAAGGCTGTGGAGAAAAAGCAAAACCATGT
CGTTCAATTCAATATGCAAATTTGAATGTATGTTATTCGAAAGCATACGA
CAAAGAATGTCATCTAATCTTGGATGGCGGTTCTGAATCAGAACGTTATT
CGTACATCATTTCTAACAATGAGATCATCATCTTGACCAACCCCATTAAC
TCCGTCAGATCGTTAAACAGTAGCATTGTACCGCACTTTGTTTGCAATTA
CACTTTCAGAGATGAACCATGCTTGGTGGTCAATGGTCAACAACTTACAG
TGGATTCGATCAACTTTGTGACGATTGGTAAAAAACTGCAACTGAGTATG
TACGATCTGCAGTTTTCAAGTGCAGGTAACACGGCGGTTTATTGTTTAAT
TTGAAGTGTAACTAAATATATTTCCGAGTACtcgactaaaaatttgaatt
taaatcaaaatattgtacaaatttttttttcctcagCATTTATAGATTGA
AATGAAACGACCGTTGCCCCAATACACATCTTTGATTTAGCTTTGCTTAG
ATTAGATTGAACTTTCTTTAAACTTGTAGCAAGCGTTGAATTATTGTTAT
CTTGTGTGATTTCAACATACTACAACGCAATCAAGTATAACCAGAGGCTA
GAAGTGCATCTTCAACCTTTCCCAGACATGACAAGAGATTTGTGCTTCTT
TCGGACAAGGGTTTAAGATTGAAATCTTGTGGCAAATTATTTCAATGCAG
CTTTGGTTGAAATATCATACAGGTTTGAGTGGGGTTTGAGTAACTTGAGC
AATAAATGAGCAGTAGTACCAACACATATGTATAGATTCACTTCTAGCCT
ATAGAGAAACTTCAACTATACTTCAACATAAAATAAGCCCCTTGCACCGA
CGACGTAGTTTTAAATTTATTGTTTGATCTCTGTGAAGGTTGTTTCATAA
TATAGTGAAGTCTGCTCAAACTCGACACATATCTGATAATTCTTCTTTAA
GGTGTTGGATCGAAAATCAAGAATTGTGAATTCCATAATGCATACATATA
TTTTCACGCGATCAAAACACTTCAGAACATCAAAATAACAGCAAGCAAAG
TGATGATGGATTTGCAAGTTCCAACAACACTGAAGAAGTTTGATATCGAA
GGATGCGAGCTCGAGATCACTGGTGATGCTCCCATGACGATAAAAGAAGG
CAGCAAATTCGTTGGTACAAGCTTCAAAATGACACCTCCATCCTGAGCAA
ACAACATTAAAAACATTATAACATTGTAAAAGTTGGATTAAACttccaat
ttttgttttctataGATCAGTTCCTTTGTAGGTACTCTCATACTATCATT
AGATTTAAGACTTtggaggaccttaggatctttgGATCCAAAACTCAAAA
ATGTTctataaaagttttatttttacataaataagTGTTCCCTTTTTATA
TCAGACACTATTGTTATAAGGGACTTACGGGACTTCGTAATACCAATATA
CCGATCGAGATATATATGGAGATTTTCTAGAATCCCTTTCACTTCTAtct
tttataacatttcaataATGAAAACAAGATTTCTTGATTTCTTATCGATA
GTTGACcgaaaataccaaaataccgACATAAAAAGGGTCTTTTACCGATA
CCGAGATGCTCTTGAAATACCGATTATCGATATTATTTTTTCCCTTATAC
CGATGAACCGATCTAAAAAAAGGCCAATACCGATGTAGCGATACTCCGTA
TGCCCCCACAACCCCCTCGCTTNAAAAAAGGCCAATACCGATGTACCGAT
ACTCCGTATGCCCCCACAACCCCCTCGCTTTCTTGGTCCTGTAAAAAGAA
TTCGTGGGtcgaaaaatcaacccttacacGCCTGTGgtgtattttcttga
aaaactttGTCTATTTTCGTCTATTTTTAATCGCATGTAACATTTGTAAC
TGAGTATCGGTACATCGGTATTGGCCTTTTTTAGATCGGTTCATCGGTAT
AAGGGAAAAAATAATATCGATAATCGGTATTTCAAGAGCATCTCGGTATC
GGTAAAAGaccgaaaatgaaaaaagtaaatgaagatgaagaaaatgaaca
tcttcattttacattttacaagtTTATAATATGTTTCAGATTATTTCCCT
CGACAATATTGtcgaaactgaagggtcgaaagggtttaaaatcttcatca
aaatcaatttaatatttagttttaccgaaattttcctcagatttttggtt
ctagactggataaagtctatgtaaggctggatctacctcgaaacccatat
ttgatgtatttttatgaattaccagattatttggcctttttcgacggatt
acatagttcggaagggggtcactaccccccctaccctagagctacccccc
ctaccctaggttcttcccccttttaagatttgatgctac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029087TCONS_00029087Clytia hemisphaericatranscript
TCONS_00029088TCONS_00029088Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00029087-proteinTCONS_00029087-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000724supercontigsc0000724:114333..117821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.74	1.2	0.7	0.63	0.43	0.31	0.4	0.46	0.16	0.2	0.38	0.38	80.05	66.16	31.39	28.88	4.12	7.27	1.12	0.78	0.71	0.48	0.71	0.8	0.46	0.43	0.29	0.68	0.45	1.02