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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029088 ID=TCONS_00029088|Name=TCONS_00029088|organism=Clytia hemisphaerica|type=transcript|length=1575bp
TATAACCAGAGGCTAGAAGTGCATCTTCAACCTTTCCCAGACATGACAAG
AGATTTGTGCTTCTTTCGGACAAGGGTTTAAGATTGAAATCTTGTGGCAA
ATTATTTCAATGCAGCTTTGGTTGAAATATCATACAGGTGTTGGATCGAA
AATCAAGAATTGTGAATTCCATAATGCATACATATATTTTCACGCGATCA
AAACACTTCAGAACATCAAAATAACAGCAAGCAAAGTGATGATGGATTTG
CAAGTTCCAACAACACTGAAGAAGTTTGATATCGAAGGATGCGAGCTCGA
GATCACTGGTGATGCTCCCATGACGATAAAAGAAGGCAGCAAATTCGTTG
GTACAAGCTTCAAAATGACACCTCCATCCTGAGCAAACAACATTAAAAAC
ATTATAACATTGTAAAAGTTGGATTAAACttccaatttttgttttctata
GATCAGTTCCTTTGTAGGTACTCTCATACTATCATTAGATTTAAGACTTt
ggaggaccttaggatctttgGATCCAAAACTCAAAAATGTTctataaaag
ttttatttttacataaataagTGTTCCCTTTTTATATCAGACACTATTGT
TATAAGGGACTTACGGGACTTCGTAATACCAATATACCGATCGAGATATA
TATGGAGATTTTCTAGAATCCCTTTCACTTCTAtcttttataacatttca
ataATGAAAACAAGATTTCTTGATTTCTTATCGATAGTTGACcgaaaata
ccaaaataccgACATAAAAAGGGTCTTTTACCGATACCGAGATGCTCTTG
AAATACCGATTATCGATATTATTTTTTCCCTTATACCGATGAACCGATCT
AAAAAAAGGCCAATACCGATGTAGCGATACTCCGTATGCCCCCACAACCC
CCTCGCTTNAAAAAAGGCCAATACCGATGTACCGATACTCCGTATGCCCC
CACAACCCCCTCGCTTTCTTGGTCCTGTAAAAAGAATTCGTGGGtcgaaa
aatcaacccttacacGCCTGTGgtgtattttcttgaaaaactttGTCTAT
TTTCGTCTATTTTTAATCGCATGTAACATTTGTAACTGAGTATCGGTACA
TCGGTATTGGCCTTTTTTAGATCGGTTCATCGGTATAAGGGAAAAAATAA
TATCGATAATCGGTATTTCAAGAGCATCTCGGTATCGGTAAAAGaccgaa
aatgaaaaaagtaaatgaagatgaagaaaatgaacatcttcattttacat
tttacaagtTTATAATATGTTTCAGATTATTTCCCTCGACAATATTGtcg
aaactgaagggtcgaaagggtttaaaatcttcatcaaaatcaatttaata
tttagttttaccgaaattttcctcagatttttggttctagactggataaa
gtctatgtaaggctggatctacctcgaaacccatatttgatgtattttta
tgaattaccagattatttggcctttttcgacggattacatagttcggaag
ggggtcactaccccccctaccctagagctaccccccctaccctaggttct
tcccccttttaagatttgatgctac Run BLAST on NCBI transcript from alignment at sc0000724:116018..117821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029088 ID=TCONS_00029088|Name=TCONS_00029088|organism=Clytia hemisphaerica|type=transcript|length=1804bp|location=Sequence derived from alignment at sc0000724:116018..117821+ (Clytia hemisphaerica)
TATAACCAGAGGCTAGAAGTGCATCTTCAACCTTTCCCAGACATGACAAG
AGATTTGTGCTTCTTTCGGACAAGGGTTTAAGATTGAAATCTTGTGGCAA
ATTATTTCAATGCAGCTTTGGTTGAAATATCATACAGGTTTGAGTGGGGT
TTGAGTAACTTGAGCAATAAATGAGCAGTAGTACCAACACATATGTATAG
ATTCACTTCTAGCCTATAGAGAAACTTCAACTATACTTCAACATAAAATA
AGCCCCTTGCACCGACGACGTAGTTTTAAATTTATTGTTTGATCTCTGTG
AAGGTTGTTTCATAATATAGTGAAGTCTGCTCAAACTCGACACATATCTG
ATAATTCTTCTTTAAGGTGTTGGATCGAAAATCAAGAATTGTGAATTCCA
TAATGCATACATATATTTTCACGCGATCAAAACACTTCAGAACATCAAAA
TAACAGCAAGCAAAGTGATGATGGATTTGCAAGTTCCAACAACACTGAAG
AAGTTTGATATCGAAGGATGCGAGCTCGAGATCACTGGTGATGCTCCCAT
GACGATAAAAGAAGGCAGCAAATTCGTTGGTACAAGCTTCAAAATGACAC
CTCCATCCTGAGCAAACAACATTAAAAACATTATAACATTGTAAAAGTTG
GATTAAACttccaatttttgttttctataGATCAGTTCCTTTGTAGGTAC
TCTCATACTATCATTAGATTTAAGACTTtggaggaccttaggatctttgG
ATCCAAAACTCAAAAATGTTctataaaagttttatttttacataaataag
TGTTCCCTTTTTATATCAGACACTATTGTTATAAGGGACTTACGGGACTT
CGTAATACCAATATACCGATCGAGATATATATGGAGATTTTCTAGAATCC
CTTTCACTTCTAtcttttataacatttcaataATGAAAACAAGATTTCTT
GATTTCTTATCGATAGTTGACcgaaaataccaaaataccgACATAAAAAG
GGTCTTTTACCGATACCGAGATGCTCTTGAAATACCGATTATCGATATTA
TTTTTTCCCTTATACCGATGAACCGATCTAAAAAAAGGCCAATACCGATG
TAGCGATACTCCGTATGCCCCCACAACCCCCTCGCTTNAAAAAAGGCCAA
TACCGATGTACCGATACTCCGTATGCCCCCACAACCCCCTCGCTTTCTTG
GTCCTGTAAAAAGAATTCGTGGGtcgaaaaatcaacccttacacGCCTGT
GgtgtattttcttgaaaaactttGTCTATTTTCGTCTATTTTTAATCGCA
TGTAACATTTGTAACTGAGTATCGGTACATCGGTATTGGCCTTTTTTAGA
TCGGTTCATCGGTATAAGGGAAAAAATAATATCGATAATCGGTATTTCAA
GAGCATCTCGGTATCGGTAAAAGaccgaaaatgaaaaaagtaaatgaaga
tgaagaaaatgaacatcttcattttacattttacaagtTTATAATATGTT
TCAGATTATTTCCCTCGACAATATTGtcgaaactgaagggtcgaaagggt
ttaaaatcttcatcaaaatcaatttaatatttagttttaccgaaattttc
ctcagatttttggttctagactggataaagtctatgtaaggctggatcta
cctcgaaacccatatttgatgtatttttatgaattaccagattatttggc
ctttttcgacggattacatagttcggaagggggtcactaccccccctacc
ctagagctaccccccctaccctaggttcttcccccttttaagatttgatg
ctac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029088-exon-sc0000724-1491911889:116018..116154 | TCONS_00029088-exon-sc0000724-1491911889:116018..116154 | Clytia hemisphaerica | exon |
| TCONS_00029088-exon-sc0000724-1510915933:116018..116154 | TCONS_00029088-exon-sc0000724-1510915933:116018..116154 | Clytia hemisphaerica | exon |
| TCONS_00029088-exon-sc0000724-1575043694:116018..116154 | TCONS_00029088-exon-sc0000724-1575043694:116018..116154 | Clytia hemisphaerica | exon |
| TCONS_00029088-exon-sc0000724-1491911889:116384..117821 | TCONS_00029088-exon-sc0000724-1491911889:116384..117821 | Clytia hemisphaerica | exon |
| TCONS_00029088-exon-sc0000724-1510915933:116384..117821 | TCONS_00029088-exon-sc0000724-1510915933:116384..117821 | Clytia hemisphaerica | exon |
| TCONS_00029088-exon-sc0000724-1575043694:116384..117821 | TCONS_00029088-exon-sc0000724-1575043694:116384..117821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:116018..117821 + |
Blast
The following BLAST results are available for this feature:
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