XLOC_016599 (gene) - C. hemisphaerica

Overview
NameXLOC_016599
Unique NameXLOC_016599
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000727:95948..99621+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016599 ID=XLOC_016599|Name=XLOC_016599|organism=Clytia hemisphaerica|type=gene|length=3674bp|location=Sequence derived from alignment at sc0000727:95948..99621+ (Clytia hemisphaerica)
TTGAGAAAAGATAAATTGAAATCTGAGAATTCCTTTCAATCATTCTTGAC
TGACGAAAATTGCCAGATCAAAATAAAAGTCGTGTCAATTTCTCGATCAC
TGAATGGAGATCCTATTTGAGCAGTCGCTTGAACATGCagatcaaatttc
ttttccattCCCGTATAAATAGTACATCCAAAAAAACTTTCTGAAGTATC
TTCAGCATTTCTTACAGCGTTTTCTTGTAGTTGTGAAGACACCAAAAACC
AGAGTAAGTCATGTTCTGTTGGACCCTCACTTTCATCGGTCGAGTGTAAG
GAATTGACATATGACTAACGATAGTCTTTAAAATCTTCCCGACTTTCTTG
AACTTCTAGATGAATATTTTGGCACTCGTAGATTGTCTGACTTTACTTGA
TTTGATTACTTGCATATATCCTTCTTTTTCCTTTCTCTGCAGATGAAGAT
TGCAGTATTGTGTTTGTTGTTTGGACTCATTTGCGCCAACCCAATCGAAC
AAAATGATGAAGAAGTCGCATGCGCTGCTCTCTACTCTAATGACGTAAGT
GGTGTGTGTACTTTTTGAATCTCTAACCAGAGGAAATCTTCAATCAGGGT
CGATTGACACTTTTGGGGATTTTAACGTTCTATAGTATTTAAAGTTTGGG
TGAGGATGGCGTTTTCAGCATTTCTACTACCTTGGCCGGCCATTGCTGAA
GCCATCGCCATGATAACGGACTTTCGTCACCAGGTTTCCGGTCTATATTC
GTCCTTGATTTCATTCTTCTTTGAAATAGAACACTTTCTCGTCCTACCTC
TATGATGGATGCTGTATGAGAACACTCTCCCTATGAAAACTTTTTCCATT
CTCTAGGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGAAATGGA
GGAATCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATGGCGGCG
GTGTTGAAGACGTCCTCGAAAAATGTAAGTCCTAAAAATACAAGTCTCTT
GAACAGAATGAAGTACTGACCATCGAGTACGACGGAATGTTTTCTGATTT
GCATTTCCTTCACACCGCggtgaattaaaaaaattatcaagtcTGTACAA
CTTTCAATCCAAAGACCCTTTGCGGTAAAAGCTCTTCAAATTACGAACTA
CTTAAGATATTATAATAAAAGTAAAAGCTTTCGTGATTCTCCAATCTTAG
CATAGAAGATCCCATCGTCTACCCAAGATCACTGGAAAAAGGAAATAGTT
TAGgaggcgggataaatttgaaaacagtgTTGAGCCCGGGccgtaagcag
tggcggaggtgtttacagtgtcCCAAACTCTACCGCCATGTTTTCCCCAT
AAACCGCCCTGACAGGTATAAACTCAGGGTATATTTCCCCACGTTTACTG
ACTGTCTAACGGACGATAGTATCGTCTAATCTCAGCACTAAATCCAATTA
TTACAAAATGAATTAATTGTGGGATCGAAAGCCGTACATATTCCAGCTAA
AATAATTATATGACGTATGCGACGCGGAGCACTATTGGATAATCGAGTAT
AATTTGTTATTCCATTAATCCCTACAGTgtttcataaaattttcttaTCA
CAATTCTCGTTATAGTATTGTTGAAGAAATTAGAGTTCTTGGTCAACTTG
GGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATTCGTTCACGATTTGGT
GCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGANTTACTCGGAAAATT
CGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCTTTGA
ATGGTGGAATCTTCGCCATGATCCGACTCGTCACCAAACTCCTAGCCTCC
GGTGCTCTCGGTTGAGCGACAATATATTCAAAACTCATTTCTTTTTGCTA
TCAGAAATaaatactttacaaataaaTATCAAACCAATGCGTTCCTTTTC
GGCTGCTGGTTNAATATATTCAAAACTCATTTCTTTTTGCTATCAGAAAT
aaatactttacaaataaaTATCAAACCAATGCGTTCCTTTTCGGCTGCTG
GTTTCTACAATTTTCTCTCGTAATTTACGAAATTTAGACAAACAAAATCT
CGAGAACAGAGAATTCTTCAAAGCCTTTTTGTTGACAGCATAAAGATTTA
TTAAGTTATTACCCTTTCCCCGATGGGAACGATAATTAGTGTAGTTTTCG
AATGGTGATGAAATTTAAGGATATTTTCTTCACTGGGGGCTTACTTGACG
ATCAAGTTTTCTTTCAGTGGATATGATCTGTGACACAAGAACAGAAATTC
ATTGCATCGAGCCCTTATATTGATATCATTTCCATGACGAGATCTCATTC
TTCGTTTTGTTTGCTTCAAAACCGTGATTAGATGTTTGTGTTATGCATAC
CCTAAATTCGTTCATTTAATTCAACCGTTTTCACTTGatttgatcaaatt
taataaaaaccTCAAATATTGATCACTAGTGAAGCAACTTTCAAAGAAAA
CTCacaacaaaacaaacaattcTGTCAATACCTCTTCGCCTATAAAGTCT
CCAATATTTCGCATAAAAGTCACTCCATCTTCACTGCTTACATTGGATCA
GTTCCAAAGAGATTTACTAAAAACAAAAACCAGGTATACTTctattgttt
ttcttctttagaaGTAGAGATTGTTGTCTACTTATGCTTNCAGTTCCAAA
GAGATTTACTAAAAACAAAAACCAGGTATACTTctattgtttttcttctt
tagaaGTAGAGATTGTTGTCTACTTATGCTTTCATTAGATATTTAATGTT
GAACCTGTTTGTCACATCACTGCCTACTGAGTTTGAAATGCGAAATGTCG
TCGGAATTCTATTTCTTCATACGGTTAAAATTACGACCAATCACTACACT
ACACAGAATTTTCACGTCCCCCTTTTTCCGATCTTCAGAATGAATAAATT
GGTGTTGTTACTTCTTGGCGTTTCGTGCGCCCTCATCGCATTCACCAACG
CCCGCGCCATCGAAGAAGATGTaagtatattttttaaaactgGTTTCTGA
TATACAATGAAAAACCTTGCTCTTATATGCTGTGATAAAGTTCACTTTTG
TAGAGTATCGAAGTGCTATGGATGCATTTCCTGAAGCTTtcgtaaaattt
tcttttgttgttttgttttcagttAGAAGACCTTGCCGAACTTCGTGAGC
GAAGACAACTTCCACCCCCACCCCCAGGCGGTAATGGCGGTAATGGTGTT
GACCCACAAAAGGAATTGCTCGAAAAATGtaagggtttaaatttcaaatt
ttctgtgCATCAAAATTCTTGGTTAGATGACAACAAAGACATTAAAATGT
TTATAGCATATGAGAATTCATGAAAGGAAATCGTTTTACCTTCATGGGGA
ATCATGCGATATGTATCCAACTTTTCTGACTTTTCATTTCCCGTTTCAGT
GTTGTTGGAAAAGTTGAATTTTATCACTCGACTTGGTTTATTGAAAGGGA
TCCCCTTCCTTGGACAACTTGTTCACGATCTGGTGGAGAAGGATCCAGAA
GGCGTCTCCAAGGCGTTGAGCGGTGGAATCTTTGCCATTCTCGGTCACGT
CTTGAAGAGTGGATTAGTTGGATAATCTTGTAAAATGCATTGTagtgaaa
tatatttttaaaataccaaacaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029173TCONS_00029173Clytia hemisphaericatranscript
TCONS_00029174TCONS_00029174Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00029173-proteinTCONS_00029173-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000727supercontigsc0000727:95948..99621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48	0.67	0.52	0.58	0.11	0.2	0.19	0.18	0.5	0.15	0.45	0.89	451.14	397.81	1.93	3.96	61.58	73.81	4550.39	4032.17	384.34	412.09	988.23	988.77	1283.34	1365.72	19.6	28.3	5.3	5.7