TCONS_00029173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029173
Unique NameTCONS_00029173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029173 ID=TCONS_00029173|Name=TCONS_00029173|organism=Clytia hemisphaerica|type=transcript|length=1904bp
TTGAGAAAAGATAAATTGAAATCTGAGAATTCCTTTCAATCATTCTTGAC
TGACGAAAATTGCCAGATCAAAATAAAAGTCGTGTCAATTTCTCGATCAC
TGAATGGAGATCCTATTTGAGCAGTCGCTTGAACATGCagatcaaatttc
ttttccattCCCGTATAAATAGTACATCCAAAAAAACTTTCTGAAGTATC
TTCAGCATTTCTTACAGCGTTTTCTTGTAGTTGTGAAGACACCAAAAACC
AGAATGAAGATTGCAGTATTGTGTTTGTTGTTTGGACTCATTTGCGCCAA
CCCAATCGAACAAAATGATGAAGAAGTCGCATGCGCTGCTCTCTACTCTA
ATGACGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGAAATGGAG
GAATCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATGGCGGCGG
TGTTGAAGACGTCCTCGAAAAATTATTGTTGAAGAAATTAGAGTTCTTGG
TCAACTTGGGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATTCGTTCAC
GATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGANTTACTC
GGAAAATTCGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAA
AGCTTTGAATGGTGGAATCTTCGCCATGATCCGACTCGTCACCAAACTCC
TAGCCTCCGGTGCTCTCGGTTGAGCGACAATATATTCAAAACTCATTTCT
TTTTGCTATCAGAAATaaatactttacaaataaaTATCAAACCAATGCGT
TCCTTTTCGGCTGCTGGTTNAATATATTCAAAACTCATTTCTTTTTGCTA
TCAGAAATaaatactttacaaataaaTATCAAACCAATGCGTTCCTTTTC
GGCTGCTGGTTTCTACAATTTTCTCTCGTAATTTACGAAATTTAGACAAA
CAAAATCTCGAGAACAGAGAATTCTTCAAAGCCTTTTTGTTGACAGCATA
AAGATTTATTAAGTTATTACCCTTTCCCCGATGGGAACGATAATTAGTGT
AGTTTTCGAATGGTGATGAAATTTAAGGATATTTTCTTCACTGGGGGCTT
ACTTGACGATCAAGTTTTCTTTCAGTGGATATGATCTGTGACACAAGAAC
AGAAATTCATTGCATCGAGCCCTTATATTGATATCATTTCCATGACGAGA
TCTCATTCTTCGTTTTGTTTGCTTCAAAACCGTGATTAGATGTTTGTGTT
ATGCATACCCTAAATTCGTTCATTTAATTCAACCGTTTTCACTTGatttg
atcaaatttaataaaaaccTCAAATATTGATCACTAGTGAAGCAACTTTC
AAAGAAAACTCacaacaaaacaaacaattcTGTCAATACCTCTTCGCCTA
TAAAGTCTCCAATATTTCGCATAAAAGTCACTCCATCTTCACTGCTTACA
TTGGATCAGTTCCAAAGAGATTTACTAAAAACAAAAACCAGAATGAATAA
ATTGGTGTTGTTACTTCTTGGCGTTTCGTGCGCCCTCATCGCATTCACCA
ACGCCCGCGCCATCGAAGAAGATttAGAAGACCTTGCCGAACTTCGTGAG
CGAAGACAACTTCCACCCCCACCCCCAGGCGGTAATGGCGGTAATGGTGT
TGACCCACAAAAGGAATTGCTCGAAAAATTGTTGTTGGAAAAGTTGAATT
TTATCACTCGACTTGGTTTATTGAAAGGGATCCCCTTCCTTGGACAACTT
GTTCACGATCTGGTGGAGAAGGATCCAGAAGGCGTCTCCAAGGCGTTGAG
CGGTGGAATCTTTGCCATTCTCGGTCACGTCTTGAAGAGTGGATTAGTTG
GATAATCTTGTAAAATGCATTGTagtgaaatatatttttaaaataccaaa
caat
Run BLAST on NCBI

protein sequence of TCONS_00029173-protein

>TCONS_00029173-protein ID=TCONS_00029173-protein|Name=TCONS_00029173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MKIAVLCLLFGLICANPIEQNDEEVACAALYSNDVCDGYELAGLEDEMEE
SNAKRQMPPPGGNGGGVEDVLEKLLLKKLEFLVNLGLLKRIPLLGKFVHD
LVQSDPEGVAKALXYSENSFTIWCKAILKELPKL
Run BLAST on NCBI

transcript from alignment at sc0000727:95948..99621+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029173 ID=TCONS_00029173|Name=TCONS_00029173|organism=Clytia hemisphaerica|type=transcript|length=3674bp|location=Sequence derived from alignment at sc0000727:95948..99621+ (Clytia hemisphaerica)
TTGAGAAAAGATAAATTGAAATCTGAGAATTCCTTTCAATCATTCTTGAC
TGACGAAAATTGCCAGATCAAAATAAAAGTCGTGTCAATTTCTCGATCAC
TGAATGGAGATCCTATTTGAGCAGTCGCTTGAACATGCagatcaaatttc
ttttccattCCCGTATAAATAGTACATCCAAAAAAACTTTCTGAAGTATC
TTCAGCATTTCTTACAGCGTTTTCTTGTAGTTGTGAAGACACCAAAAACC
AGAGTAAGTCATGTTCTGTTGGACCCTCACTTTCATCGGTCGAGTGTAAG
GAATTGACATATGACTAACGATAGTCTTTAAAATCTTCCCGACTTTCTTG
AACTTCTAGATGAATATTTTGGCACTCGTAGATTGTCTGACTTTACTTGA
TTTGATTACTTGCATATATCCTTCTTTTTCCTTTCTCTGCAGATGAAGAT
TGCAGTATTGTGTTTGTTGTTTGGACTCATTTGCGCCAACCCAATCGAAC
AAAATGATGAAGAAGTCGCATGCGCTGCTCTCTACTCTAATGACGTAAGT
GGTGTGTGTACTTTTTGAATCTCTAACCAGAGGAAATCTTCAATCAGGGT
CGATTGACACTTTTGGGGATTTTAACGTTCTATAGTATTTAAAGTTTGGG
TGAGGATGGCGTTTTCAGCATTTCTACTACCTTGGCCGGCCATTGCTGAA
GCCATCGCCATGATAACGGACTTTCGTCACCAGGTTTCCGGTCTATATTC
GTCCTTGATTTCATTCTTCTTTGAAATAGAACACTTTCTCGTCCTACCTC
TATGATGGATGCTGTATGAGAACACTCTCCCTATGAAAACTTTTTCCATT
CTCTAGGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGAAATGGA
GGAATCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATGGCGGCG
GTGTTGAAGACGTCCTCGAAAAATGTAAGTCCTAAAAATACAAGTCTCTT
GAACAGAATGAAGTACTGACCATCGAGTACGACGGAATGTTTTCTGATTT
GCATTTCCTTCACACCGCggtgaattaaaaaaattatcaagtcTGTACAA
CTTTCAATCCAAAGACCCTTTGCGGTAAAAGCTCTTCAAATTACGAACTA
CTTAAGATATTATAATAAAAGTAAAAGCTTTCGTGATTCTCCAATCTTAG
CATAGAAGATCCCATCGTCTACCCAAGATCACTGGAAAAAGGAAATAGTT
TAGgaggcgggataaatttgaaaacagtgTTGAGCCCGGGccgtaagcag
tggcggaggtgtttacagtgtcCCAAACTCTACCGCCATGTTTTCCCCAT
AAACCGCCCTGACAGGTATAAACTCAGGGTATATTTCCCCACGTTTACTG
ACTGTCTAACGGACGATAGTATCGTCTAATCTCAGCACTAAATCCAATTA
TTACAAAATGAATTAATTGTGGGATCGAAAGCCGTACATATTCCAGCTAA
AATAATTATATGACGTATGCGACGCGGAGCACTATTGGATAATCGAGTAT
AATTTGTTATTCCATTAATCCCTACAGTgtttcataaaattttcttaTCA
CAATTCTCGTTATAGTATTGTTGAAGAAATTAGAGTTCTTGGTCAACTTG
GGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATTCGTTCACGATTTGGT
GCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGANTTACTCGGAAAATT
CGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCTTTGA
ATGGTGGAATCTTCGCCATGATCCGACTCGTCACCAAACTCCTAGCCTCC
GGTGCTCTCGGTTGAGCGACAATATATTCAAAACTCATTTCTTTTTGCTA
TCAGAAATaaatactttacaaataaaTATCAAACCAATGCGTTCCTTTTC
GGCTGCTGGTTNAATATATTCAAAACTCATTTCTTTTTGCTATCAGAAAT
aaatactttacaaataaaTATCAAACCAATGCGTTCCTTTTCGGCTGCTG
GTTTCTACAATTTTCTCTCGTAATTTACGAAATTTAGACAAACAAAATCT
CGAGAACAGAGAATTCTTCAAAGCCTTTTTGTTGACAGCATAAAGATTTA
TTAAGTTATTACCCTTTCCCCGATGGGAACGATAATTAGTGTAGTTTTCG
AATGGTGATGAAATTTAAGGATATTTTCTTCACTGGGGGCTTACTTGACG
ATCAAGTTTTCTTTCAGTGGATATGATCTGTGACACAAGAACAGAAATTC
ATTGCATCGAGCCCTTATATTGATATCATTTCCATGACGAGATCTCATTC
TTCGTTTTGTTTGCTTCAAAACCGTGATTAGATGTTTGTGTTATGCATAC
CCTAAATTCGTTCATTTAATTCAACCGTTTTCACTTGatttgatcaaatt
taataaaaaccTCAAATATTGATCACTAGTGAAGCAACTTTCAAAGAAAA
CTCacaacaaaacaaacaattcTGTCAATACCTCTTCGCCTATAAAGTCT
CCAATATTTCGCATAAAAGTCACTCCATCTTCACTGCTTACATTGGATCA
GTTCCAAAGAGATTTACTAAAAACAAAAACCAGGTATACTTctattgttt
ttcttctttagaaGTAGAGATTGTTGTCTACTTATGCTTNCAGTTCCAAA
GAGATTTACTAAAAACAAAAACCAGGTATACTTctattgtttttcttctt
tagaaGTAGAGATTGTTGTCTACTTATGCTTTCATTAGATATTTAATGTT
GAACCTGTTTGTCACATCACTGCCTACTGAGTTTGAAATGCGAAATGTCG
TCGGAATTCTATTTCTTCATACGGTTAAAATTACGACCAATCACTACACT
ACACAGAATTTTCACGTCCCCCTTTTTCCGATCTTCAGAATGAATAAATT
GGTGTTGTTACTTCTTGGCGTTTCGTGCGCCCTCATCGCATTCACCAACG
CCCGCGCCATCGAAGAAGATGTaagtatattttttaaaactgGTTTCTGA
TATACAATGAAAAACCTTGCTCTTATATGCTGTGATAAAGTTCACTTTTG
TAGAGTATCGAAGTGCTATGGATGCATTTCCTGAAGCTTtcgtaaaattt
tcttttgttgttttgttttcagttAGAAGACCTTGCCGAACTTCGTGAGC
GAAGACAACTTCCACCCCCACCCCCAGGCGGTAATGGCGGTAATGGTGTT
GACCCACAAAAGGAATTGCTCGAAAAATGtaagggtttaaatttcaaatt
ttctgtgCATCAAAATTCTTGGTTAGATGACAACAAAGACATTAAAATGT
TTATAGCATATGAGAATTCATGAAAGGAAATCGTTTTACCTTCATGGGGA
ATCATGCGATATGTATCCAACTTTTCTGACTTTTCATTTCCCGTTTCAGT
GTTGTTGGAAAAGTTGAATTTTATCACTCGACTTGGTTTATTGAAAGGGA
TCCCCTTCCTTGGACAACTTGTTCACGATCTGGTGGAGAAGGATCCAGAA
GGCGTCTCCAAGGCGTTGAGCGGTGGAATCTTTGCCATTCTCGGTCACGT
CTTGAAGAGTGGATTAGTTGGATAATCTTGTAAAATGCATTGTagtgaaa
tatatttttaaaataccaaacaat

Coding sequence (CDS) from alignment at sc0000727:95948..99621+

>TCONS_00029173 ID=TCONS_00029173|Name=TCONS_00029173|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000727:95948..99621+ (Clytia hemisphaerica)
ATGAAGATTGCAGTATTGTGTTTGTTGTTTGGACTCATTTGCGCCAACCC
AATCGAACAAAATGATGAAGAAGTCGCATGCGCTGCTCTCTACTCTAATG
ACGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGAAATGGAGGAA
TCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATGGCGGCGGTGT
TGAAGACGTCCTCGAAAAATTATTGTTGAAGAAATTAGAGTTCTTGGTCA
ACTTGGGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATTCGTTCACGAT
TTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGANTTACTCGGA
AAATTCGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGC
TTTGAATGAAGATTGCAGTATTGTGTTTGTTGTTTGGACTCATTTGCGCC
AACCCAATCGAACAAAATGATGAAGAAGTCGCATGCGCTGCTCTCTACTC
TAATGACGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGAAATGG
AGGAATCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATGGCGGC
GGTGTTGAAGACGTCCTCGAAAAATTATTGTTGAAGAAATTAGAGTTCTT
GGTCAACTTGGGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATTCGTTC
ACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGANTTAC
TCGGAAAATTCGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCC
AAAGCTTTGAATGAAGATTGCAGTATTGTGTTTGTTGTTTGGACTCATTT
GCGCCAACCCAATCGAACAAAATGATGAAGAAGTCGCATGCGCTGCTCTC
TACTCTAATGACGTATGCGACGGATACGAATTAGCTGGTCTTGAAGACGA
AATGGAGGAATCGAACGCCAAACGACAAATGCCTCCACCAGGGGGTAATG
GCGGCGGTGTTGAAGACGTCCTCGAAAAATTATTGTTGAAGAAATTAGAG
TTCTTGGTCAACTTGGGTTTGTTGAAGAGAATTCCTTTACTCGGAAAATT
CGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAGTTGCCAAAGCGTTGA
NTTACTCGGAAAATTCGTTCACGATTTGGTGCAAAGCGATCCTGAAGGAG
TTGCCAAAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016599XLOC_016599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029173-exon-sc0000727-1491911889:95948..96200TCONS_00029173-exon-sc0000727-1491911889:95948..96200Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:95948..96200TCONS_00029173-exon-sc0000727-1510915933:95948..96200Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:95948..96200TCONS_00029173-exon-sc0000727-1575043694:95948..96200Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:96390..96491TCONS_00029173-exon-sc0000727-1491911889:96390..96491Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:96390..96491TCONS_00029173-exon-sc0000727-1510915933:96390..96491Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:96390..96491TCONS_00029173-exon-sc0000727-1575043694:96390..96491Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:96804..96921TCONS_00029173-exon-sc0000727-1491911889:96804..96921Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:96804..96921TCONS_00029173-exon-sc0000727-1510915933:96804..96921Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:96804..96921TCONS_00029173-exon-sc0000727-1575043694:96804..96921Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:97563..98580TCONS_00029173-exon-sc0000727-1491911889:97563..98580Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:97563..98580TCONS_00029173-exon-sc0000727-1510915933:97563..98580Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:97563..98580TCONS_00029173-exon-sc0000727-1575043694:97563..98580Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:98886..98967TCONS_00029173-exon-sc0000727-1491911889:98886..98967Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:98886..98967TCONS_00029173-exon-sc0000727-1510915933:98886..98967Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:98886..98967TCONS_00029173-exon-sc0000727-1575043694:98886..98967Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:99120..99225TCONS_00029173-exon-sc0000727-1491911889:99120..99225Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:99120..99225TCONS_00029173-exon-sc0000727-1510915933:99120..99225Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:99120..99225TCONS_00029173-exon-sc0000727-1575043694:99120..99225Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1491911889:99397..99621TCONS_00029173-exon-sc0000727-1491911889:99397..99621Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1510915933:99397..99621TCONS_00029173-exon-sc0000727-1510915933:99397..99621Clytia hemisphaericaexon
TCONS_00029173-exon-sc0000727-1575043694:99397..99621TCONS_00029173-exon-sc0000727-1575043694:99397..99621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029173-proteinTCONS_00029173-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000727supercontigsc0000727:95948..99621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481409	0.673558	0.521377	0.579643	0.112906	0.200744	0.0940459	0.117393	0.102737	0.0763537	0.0494072	0.0649566	32.2473	31.271	0.401524	0.891511	61.578	73.8089	350.62	304.671	384.338	412.088	988.225	988.769	1283.34	1365.72	19.6023	28.3019	5.2968	5.7043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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