XLOC_016639 (gene) - C. hemisphaerica

Overview
NameXLOC_016639
Unique NameXLOC_016639
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000730:81299..88660+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016639 ID=XLOC_016639|Name=XLOC_016639|organism=Clytia hemisphaerica|type=gene|length=7362bp|location=Sequence derived from alignment at sc0000730:81299..88660+ (Clytia hemisphaerica)
TTTTTAATATCCTTACATAAATAAATATACGTCCGGTCCGTTAAGTTGGG
TTGAATTTGTCTGCTAACCATTACAACACTCTTTCTTACAGGAATTTAAA
TTTAGTTCAAGAAATTCTACTTTTCACTATCCACCATCCTGCACATAACA
ACAAACATATAAAATGAAGATCTTACAAAGTTTAGTACTTCTGTTCGTCG
GTAAGTTGCtttttatacacccctgtctcagtgccccggtggcatgattt
cagtacatgatttttttcagtacatggtttcagtacatgattttttccta
cgtcactgcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNtgaaaaaaatcatgtactgaaatcatgccaccg
gggcactgagacaggggtgtttttattATCATGTCAAAAGGTTTCACGAC
AAGAAAGTTTCACTTGTGCCAACCTAGTTAACAATTGAAACAGCAATCTC
GAATCATTTATTGCGAGATAAATATTCCAAACTTGTTCGGAGAAAATCAT
CCTGATATTTCATCATGCATTCTTATGGAGTATAtacatgcttataaaaa
agagtgtattaaGAGAATCCTCTAGACGAGGCGAAAGGCTAATCCATACC
ACTAATCTCAAGCTTTCCCACaacaaattcatttcattttaatGACAGTA
TAAAAGCAATTAATATACAAATAGCCTTGGTAaccattaaaatgtttttc
aacgACGAAACCTGAAACCTTTTGATTTTGTACTTTGAAGGGAAGGTTTG
TGAATTTGTTTATCTAGTTGATGGTCGAGTAGCAATGTAACTTGTCTGTA
ATGTCAAATATAACAGACTAATGgcttttttgaatatttcaaggCAGTTT
CTGGTGCAAAAAAGGGAATTATTTTTCATAATGGACTAGAATATACTACC
GGACGGCTAAATTGTCTCATTTCTGGAGGAAATTTAACTTTTGTATTTCA
AAGATCTACCACtgtttttcagacaaaaaaagaaagttaatttATTGCAT
TAGTTAGTTTTTACCTACAAAGTGTCCTGGCCTCTTACTGCTGTAGTCAA
CAATCTGACTCTTTTCTGCTATACTAATGGCAAGAGAGCCATACCACACC
TAACACGCCTAACTCATAATGTTATGAATTGTCATGATTATGAACTTTTT
GTAGGAAAAATGCTTATCTTTTCATCTTCTGAAACATTCTCGAGATTTCT
AAGCCAATCAAAAGACGAGTACCAGAAAACTTCGCTAGATCTCTTCTGGT
GACCAAATCCGTTGCTGAAGCCTTCACCATCattaaaatcagaaagtttG
GATTCACCAAACGGATTTTCGTCGCCAGGTTTCCACCGGGCTATTACTGC
TATGGcaatgataaaaaatttctaCGGTAACGAGAAAAAAGCTTATCCAT
TCTACGAAAACGAAAGAAATTTTAGCCAGGTTATCAGTGTAACAAAAATC
AAAGGAAGGTAAACGAAGAGGATAATTAGcattgaaaaaaatctcaagTC
TACTTTATACGAAAAGGCTAGAGATGAgttttcaacctttctcaagaaAA
GATGAAGCCTTAAGATTTACGCCGCGTTTAGAATGACAAATTGAATTGTT
TTCACACGCCATTTTTTTCTGGACATgatttttactttcaatctggtgTT
GGTGATAAATAAGTGATTTCGTTTCCCGTCCAATAGTTTCAACTCTTCCT
CCTTCATGGGCTCTAAACTCCACAGTCTGAACCTTTGCTCCTTCCAGTTT
CGTTTAGTTCTTAGATAGCTGATCGAGCATGGCCGTAGatcccgtgaaaa
caatcgaaagactacCTAAGACCAAAGTCCAAGATCACTACTGTCACTCT
CTTTAAGTATCCATTATTCACCTAGTGTATTGaattgtttctttcttttt
ttcaagtgAGCTGCATGGCTGATGATGATTTATCAAACTTGCAAAACATT
TTCGGAAAAAATGAAGTCGTGAAACGATCGAATGACCATCTTTTGAATGA
TGcaggtatttttcatttttcagacttCGATGTTTCTATTATTCTGTTTG
AATTTGCACTCTTTTAGGCTCAACCAAACTGAACGAAACTAAAGTTTCTT
CGGGGGAATCCTGTCCCGCTTTATATTTGAGTAAAGCTAATGCTATTGCT
AATGGGTAGGGTGGTAAGCTCCAAAGCCGAAAGCATGCGTGACAAAAATT
GACTACTTTCCAGGGTCTCATTCGCTTCCTACTCGTCAGCTCCCAACCCC
AGTACCCCCCTACTCCttaaaaagttatgaaaatgcACTTTACTTTCATT
TCAAATACAATCAACTCCTATAAAAGATTGTAACGGGGTCCTAGACTTTG
TGCATTATCCATCTTTCTGGCAATATTAACAATAATTCTtgagtttttct
cttttttatttgcCTAGCCTTATGTTGCATTGCAGATATGTTGCACTTTC
TTGCTTATTTACACAGAATTTGAAACGCAGGCTCGTGACGTTTACATGAA
CTTCTTGAAGACCTCCAGTCTCACAATTAAAGACAATTTGGGAAGTTACT
TCAAGTTATGGCGAGAAGTAGTAGAAATTCCAGGTCCTTTTGCCACAGat
gttgaaaagaaaaatggaatCTCACAATTGCGATCAGTAGACGATTTTAT
GGTagggaagaatttttcagaaaaaaagtaaTTACTTGTGAGAAATTCAA
ATATCCATGTCCACCTTATTCTGTTGAAGACAAGTGTAATTGAGCCTGAG
atgtcaaaacaaatcaaaatgtgtgcgagtcaaaactaaaaagatacatc
agatttttactgttaGACTGTTAGATTCAGCAGTCCTTACACCCTTTACA
GTGTATTGAGCTAAAAGAATACCATTGTAGTGCACTTTATCAAAAgtcac
ccttacagtgcatttcgatggtctcgaaaaacctacccttaataGCGGCA
TATGTCGTGGGCCAGACCATATGAGTACCCCCCatattaaataaaattga
cattAAATCTTTATCTTTCACTTATCTCTGGACAGCCACTGCTATTCTTG
GACGACTTTTTGGACAATcgagatgaagatgaagaagacaagaaaaCTTT
ATTCGACGTCTTGTTCTCCAATCAAAGCAGCAGAGTGAAATTCTTTTTCG
CTGGTGACGATGATATAATCAACGGCCTCGTTTTGGCTTCACAATACAAG
AATGGAGATGTTGTCTATATCATGCATATAAGTGACTAAATGTGAAATTC
ATTACTGCAAATGTATATTTCTTTCTATTTCTAAAATGAAGGCAGAATAA
GAAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCACTCTTTTAGGCTCAACCAAACTGCACGAAACTAAAGTTT
CTTCGGGGGAATCCTGTCCCGCTTTATATTTGAGTAAAGCTAATGCTATT
GCTAATGGGTAGGGTGGTAAGCTCCAAAGCCGAAAGCATGCGTGACAAAA
ATTGACTACTTTCCAGGGTCTCATTCGCTTCCTACTCGTCAGCTCCCAAC
CCCAGTACCCCCCTACTCCttaaaaagttatgaaaatgcACTTTACTTTC
ATTTCAAATACAATCAACTCCTATAAAAGATTGTAACGGGGTCCTAGACT
TTGTGCATTATCCATCTTTCTGGCAATATTAACAATAATTCTtgagtttt
tctcttttttatttgcCTAGCCTTATGTTGCATTGCAGATATGTTGCACT
TTCTTGCTTATTTACACAGAATTTGAAACGCAGGCTCGTGACGTTTACAT
GAACTTCTTGAAGACCTCCAGTCTCACAATTAAAGACAATTTGGGAAGTT
ACTTCAAGTTATGGCGAGAAGTAGTAGAAATTCCAGGTCCTTTTGCCACA
GatgttgaaaagaaaaatggaatCTCACAATTGCGATCAGTAGACGATTT
TATGGTagggaagaatttttcagaaaaaaagtaaTTACTTGTGAGAAATT
CAAATATCCATGTCCACCTTATTCTGTTGAAGTCAAGTGTAATTGAGCCT
GAGatgtcaaaacaaatcaaaatgtgtgcgagtcaaaactaaaaagatac
atcagatttttactgttaGACTGTTAGATTCAGCAGTCCTTACACCCTTT
ACAGTGTATTGAGCTAAAAGAATACCATTGTAGTGCACTTTATCAAAAgt
cacccttacagtgcatttcgatgGTCTCGAAANAcaggtatttttcattt
ttcagacttCGATGTTTCTATTATTCTGTTTGAATTTACACTCTTTTAGG
CTCAACCAAACTGCACGAAACTAAAGTTTCTTCGGGGGAATCCTGTCCCG
CTTTATATTTGAGTAAAGCTAATGCTATTGCTAATGGGTAGGGTGGTAAG
CTCCAAAGCCGAAAGCATGCGTGACAAAAATTGACTACTTTCCAGGGTCT
CATTCGCTTCCTACTCGTCAGCTCCCAACCCCAGTACCCCCCTACTCCtt
aaaaagttatgaaaatgcACTTTACTTTCATTTCAAATACAATCAACTCC
TATAAAAGATTGTAACGGGGTCCTAGACTTTGTGCATTATCCATCTTTCT
GGCAATATTAACAATAATTCTtgagtttttctcttttttatttgcCTAGC
CTTATGTTGCATTGCAGATATGTTGCACTTTCTTGCTTATTTACACAGAA
TTTGAAACGCAGGCTCGTGACGTTTACATGAACTTCTTGAAGACCTCCAG
TCTCACAATTAAAGACAATTTGGGAAGTTACTTCAAGTTATGGCGAGAAG
TAGTAGAAATTCCAGGTCCTTTTGCCACAGatgttgaaaagaaaaatgga
atCTCACAATTGCGATCAGTAGACGATTTTATGGTagggaagaatttttc
agaaaaaaagtaaTTACTTGTGAGAAATTCAAATATCCATGTCCACCTTA
TTCTGTTGAAGTCAAGTGTAATTGAGCCTGAGatgtcaaaacaaatcaaa
atgtgtgcgagtcaaaactaaaaagatacatcagatttttactgttaGAC
TGTTAGATTCAGCAGTCCTTACACCCTTTACAGTGTATTGAGCTAAAAGA
ATACCATTGTAGTGCACTTTATCAAAAGTCACCCTTACAGTACATTTCGA
TgttctcgaaaaacctacccttaataGCGGCATATGTCGTGGGCCAGACC
ATatgagtacccccccccctcttgGGGTTACCACCAcattaaataaaatt
gacattAAATCTTTATCTTTCACTTATCTGTGGACAGCCATTGCTATTCT
TGGACGACTTTTTGGACAATCGAGATGAAGCTGAAGAAGACAAGAAAACT
TTATTCGACGTCTTGTTCTCAAATCAAAGCAGCAGAGTAAAATTCTTTTT
CGCTGGTGACGATGATATAATCAACGGCCTCGTTTTGGCTTCACAATACA
AGAATGGAGATGTTGTCTATATCATGCATATAAGTGACTAAATGTGAAAT
TCATTACTGCAAATGTATATTTCTTTCTATTTCTAAAATGAAGGCAGAAT
AAGAAATCTGAAATCTCAAGTTTTTATCCCAAGTAGGAAGGGAGGTAACG
AAGGCGAGAGGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029223TCONS_00029223Clytia hemisphaericatranscript
TCONS_00029224TCONS_00029224Clytia hemisphaericatranscript
TCONS_00029225TCONS_00029225Clytia hemisphaericatranscript
TCONS_00029226TCONS_00029226Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00029223-proteinTCONS_00029223-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:81299..88660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.27	75.59	69.28	69.72	15.87	13.74	7.19	6.08	1.08	1.94	7.68	2.78	69.76	65.95	27.89	26.42	11.24	12.83	89.55	86.5	38.46	32.9	31.32	32.95	25.27	31.05	9.24	7.3	3.89	5.54