TCONS_00029225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029225
Unique NameTCONS_00029225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029225 ID=TCONS_00029225|Name=TCONS_00029225|organism=Clytia hemisphaerica|type=transcript|length=809bp
TTTTTAATATCCTTACATAAATAAATATACGTCCGGTCCGTTAAGTTGGG
TTGAATTTGTCTGCTAACCATTACAACACTCTTTCTTACAGGAATTTAAA
TTTAGTTCAAGAAATTCTACTTTTCACTATCCACCATCCTGCACATAACA
ACAAACATATAAAATGAAGATCTTACAAAGTTTAGTACTTCTGTTCGTCG
tgAGCTGCATGGCTGATGATGATTTATCAAACTTGCAAAACATTTTCGGA
AAAAATGAAGTCGTGAAACGATCGAATGACCATCTTTTGAATGATGcagA
ATTTGAAACGCAGGCTCGTGACGTTTACATGAACTTCTTGAAGACCTCCA
GTCTCACAATTAAAGACAATTTGGGAAGTTACTTCAAGTTATGGCGAGAA
GTAGTAGAAATTCCAGGTCCTTTTGCCACAGatgttgaaaagaaaaatgg
aatCTCACAATTGCGATCAGTAGACGATTTTATGCCATTGCTATTCTTGG
ACGACTTTTTGGACAATCGAGATGAAGCTGAAGAAGACAAGAAAACTTTA
TTCGACGTCTTGTTCTCAAATCAAAGCAGCAGAGTAAAATTCTTTTTCGC
TGGTGACGATGATATAATCAACGGCCTCGTTTTGGCTTCACAATACAAGA
ATGGAGATGTTGTCTATATCATGCATATAAGTGACTAAATGTGAAATTCA
TTACTGCAAATGTATATTTCTTTCTATTTCTAAAATGAAGGCAGAATAAG
AAATCTGAAATCTCAAGTTTTTATCCCAAGTAGGAAGGGAGGTAACGAAG
GCGAGAGGC
Run BLAST on NCBI

transcript from alignment at sc0000730:81299..88660+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029225 ID=TCONS_00029225|Name=TCONS_00029225|organism=Clytia hemisphaerica|type=transcript|length=7362bp|location=Sequence derived from alignment at sc0000730:81299..88660+ (Clytia hemisphaerica)
TTTTTAATATCCTTACATAAATAAATATACGTCCGGTCCGTTAAGTTGGG
TTGAATTTGTCTGCTAACCATTACAACACTCTTTCTTACAGGAATTTAAA
TTTAGTTCAAGAAATTCTACTTTTCACTATCCACCATCCTGCACATAACA
ACAAACATATAAAATGAAGATCTTACAAAGTTTAGTACTTCTGTTCGTCG
GTAAGTTGCtttttatacacccctgtctcagtgccccggtggcatgattt
cagtacatgatttttttcagtacatggtttcagtacatgattttttccta
cgtcactgcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgaaaaaaatcatgtactgaaatcatgccaccg
gggcactgagacaggggtgtttttattATCATGTCAAAAGGTTTCACGAC
AAGAAAGTTTCACTTGTGCCAACCTAGTTAACAATTGAAACAGCAATCTC
GAATCATTTATTGCGAGATAAATATTCCAAACTTGTTCGGAGAAAATCAT
CCTGATATTTCATCATGCATTCTTATGGAGTATAtacatgcttataaaaa
agagtgtattaaGAGAATCCTCTAGACGAGGCGAAAGGCTAATCCATACC
ACTAATCTCAAGCTTTCCCACaacaaattcatttcattttaatGACAGTA
TAAAAGCAATTAATATACAAATAGCCTTGGTAaccattaaaatgtttttc
aacgACGAAACCTGAAACCTTTTGATTTTGTACTTTGAAGGGAAGGTTTG
TGAATTTGTTTATCTAGTTGATGGTCGAGTAGCAATGTAACTTGTCTGTA
ATGTCAAATATAACAGACTAATGgcttttttgaatatttcaaggCAGTTT
CTGGTGCAAAAAAGGGAATTATTTTTCATAATGGACTAGAATATACTACC
GGACGGCTAAATTGTCTCATTTCTGGAGGAAATTTAACTTTTGTATTTCA
AAGATCTACCACtgtttttcagacaaaaaaagaaagttaatttATTGCAT
TAGTTAGTTTTTACCTACAAAGTGTCCTGGCCTCTTACTGCTGTAGTCAA
CAATCTGACTCTTTTCTGCTATACTAATGGCAAGAGAGCCATACCACACC
TAACACGCCTAACTCATAATGTTATGAATTGTCATGATTATGAACTTTTT
GTAGGAAAAATGCTTATCTTTTCATCTTCTGAAACATTCTCGAGATTTCT
AAGCCAATCAAAAGACGAGTACCAGAAAACTTCGCTAGATCTCTTCTGGT
GACCAAATCCGTTGCTGAAGCCTTCACCATCattaaaatcagaaagtttG
GATTCACCAAACGGATTTTCGTCGCCAGGTTTCCACCGGGCTATTACTGC
TATGGcaatgataaaaaatttctaCGGTAACGAGAAAAAAGCTTATCCAT
TCTACGAAAACGAAAGAAATTTTAGCCAGGTTATCAGTGTAACAAAAATC
AAAGGAAGGTAAACGAAGAGGATAATTAGcattgaaaaaaatctcaagTC
TACTTTATACGAAAAGGCTAGAGATGAgttttcaacctttctcaagaaAA
GATGAAGCCTTAAGATTTACGCCGCGTTTAGAATGACAAATTGAATTGTT
TTCACACGCCATTTTTTTCTGGACATgatttttactttcaatctggtgTT
GGTGATAAATAAGTGATTTCGTTTCCCGTCCAATAGTTTCAACTCTTCCT
CCTTCATGGGCTCTAAACTCCACAGTCTGAACCTTTGCTCCTTCCAGTTT
CGTTTAGTTCTTAGATAGCTGATCGAGCATGGCCGTAGatcccgtgaaaa
caatcgaaagactacCTAAGACCAAAGTCCAAGATCACTACTGTCACTCT
CTTTAAGTATCCATTATTCACCTAGTGTATTGaattgtttctttcttttt
ttcaagtgAGCTGCATGGCTGATGATGATTTATCAAACTTGCAAAACATT
TTCGGAAAAAATGAAGTCGTGAAACGATCGAATGACCATCTTTTGAATGA
TGcaggtatttttcatttttcagacttCGATGTTTCTATTATTCTGTTTG
AATTTGCACTCTTTTAGGCTCAACCAAACTGAACGAAACTAAAGTTTCTT
CGGGGGAATCCTGTCCCGCTTTATATTTGAGTAAAGCTAATGCTATTGCT
AATGGGTAGGGTGGTAAGCTCCAAAGCCGAAAGCATGCGTGACAAAAATT
GACTACTTTCCAGGGTCTCATTCGCTTCCTACTCGTCAGCTCCCAACCCC
AGTACCCCCCTACTCCttaaaaagttatgaaaatgcACTTTACTTTCATT
TCAAATACAATCAACTCCTATAAAAGATTGTAACGGGGTCCTAGACTTTG
TGCATTATCCATCTTTCTGGCAATATTAACAATAATTCTtgagtttttct
cttttttatttgcCTAGCCTTATGTTGCATTGCAGATATGTTGCACTTTC
TTGCTTATTTACACAGAATTTGAAACGCAGGCTCGTGACGTTTACATGAA
CTTCTTGAAGACCTCCAGTCTCACAATTAAAGACAATTTGGGAAGTTACT
TCAAGTTATGGCGAGAAGTAGTAGAAATTCCAGGTCCTTTTGCCACAGat
gttgaaaagaaaaatggaatCTCACAATTGCGATCAGTAGACGATTTTAT
GGTagggaagaatttttcagaaaaaaagtaaTTACTTGTGAGAAATTCAA
ATATCCATGTCCACCTTATTCTGTTGAAGACAAGTGTAATTGAGCCTGAG
atgtcaaaacaaatcaaaatgtgtgcgagtcaaaactaaaaagatacatc
agatttttactgttaGACTGTTAGATTCAGCAGTCCTTACACCCTTTACA
GTGTATTGAGCTAAAAGAATACCATTGTAGTGCACTTTATCAAAAgtcac
ccttacagtgcatttcgatggtctcgaaaaacctacccttaataGCGGCA
TATGTCGTGGGCCAGACCATATGAGTACCCCCCatattaaataaaattga
cattAAATCTTTATCTTTCACTTATCTCTGGACAGCCACTGCTATTCTTG
GACGACTTTTTGGACAATcgagatgaagatgaagaagacaagaaaaCTTT
ATTCGACGTCTTGTTCTCCAATCAAAGCAGCAGAGTGAAATTCTTTTTCG
CTGGTGACGATGATATAATCAACGGCCTCGTTTTGGCTTCACAATACAAG
AATGGAGATGTTGTCTATATCATGCATATAAGTGACTAAATGTGAAATTC
ATTACTGCAAATGTATATTTCTTTCTATTTCTAAAATGAAGGCAGAATAA
GAAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCACTCTTTTAGGCTCAACCAAACTGCACGAAACTAAAGTTT
CTTCGGGGGAATCCTGTCCCGCTTTATATTTGAGTAAAGCTAATGCTATT
GCTAATGGGTAGGGTGGTAAGCTCCAAAGCCGAAAGCATGCGTGACAAAA
ATTGACTACTTTCCAGGGTCTCATTCGCTTCCTACTCGTCAGCTCCCAAC
CCCAGTACCCCCCTACTCCttaaaaagttatgaaaatgcACTTTACTTTC
ATTTCAAATACAATCAACTCCTATAAAAGATTGTAACGGGGTCCTAGACT
TTGTGCATTATCCATCTTTCTGGCAATATTAACAATAATTCTtgagtttt
tctcttttttatttgcCTAGCCTTATGTTGCATTGCAGATATGTTGCACT
TTCTTGCTTATTTACACAGAATTTGAAACGCAGGCTCGTGACGTTTACAT
GAACTTCTTGAAGACCTCCAGTCTCACAATTAAAGACAATTTGGGAAGTT
ACTTCAAGTTATGGCGAGAAGTAGTAGAAATTCCAGGTCCTTTTGCCACA
GatgttgaaaagaaaaatggaatCTCACAATTGCGATCAGTAGACGATTT
TATGGTagggaagaatttttcagaaaaaaagtaaTTACTTGTGAGAAATT
CAAATATCCATGTCCACCTTATTCTGTTGAAGTCAAGTGTAATTGAGCCT
GAGatgtcaaaacaaatcaaaatgtgtgcgagtcaaaactaaaaagatac
atcagatttttactgttaGACTGTTAGATTCAGCAGTCCTTACACCCTTT
ACAGTGTATTGAGCTAAAAGAATACCATTGTAGTGCACTTTATCAAAAgt
cacccttacagtgcatttcgatgGTCTCGAAANAcaggtatttttcattt
ttcagacttCGATGTTTCTATTATTCTGTTTGAATTTACACTCTTTTAGG
CTCAACCAAACTGCACGAAACTAAAGTTTCTTCGGGGGAATCCTGTCCCG
CTTTATATTTGAGTAAAGCTAATGCTATTGCTAATGGGTAGGGTGGTAAG
CTCCAAAGCCGAAAGCATGCGTGACAAAAATTGACTACTTTCCAGGGTCT
CATTCGCTTCCTACTCGTCAGCTCCCAACCCCAGTACCCCCCTACTCCtt
aaaaagttatgaaaatgcACTTTACTTTCATTTCAAATACAATCAACTCC
TATAAAAGATTGTAACGGGGTCCTAGACTTTGTGCATTATCCATCTTTCT
GGCAATATTAACAATAATTCTtgagtttttctcttttttatttgcCTAGC
CTTATGTTGCATTGCAGATATGTTGCACTTTCTTGCTTATTTACACAGAA
TTTGAAACGCAGGCTCGTGACGTTTACATGAACTTCTTGAAGACCTCCAG
TCTCACAATTAAAGACAATTTGGGAAGTTACTTCAAGTTATGGCGAGAAG
TAGTAGAAATTCCAGGTCCTTTTGCCACAGatgttgaaaagaaaaatgga
atCTCACAATTGCGATCAGTAGACGATTTTATGGTagggaagaatttttc
agaaaaaaagtaaTTACTTGTGAGAAATTCAAATATCCATGTCCACCTTA
TTCTGTTGAAGTCAAGTGTAATTGAGCCTGAGatgtcaaaacaaatcaaa
atgtgtgcgagtcaaaactaaaaagatacatcagatttttactgttaGAC
TGTTAGATTCAGCAGTCCTTACACCCTTTACAGTGTATTGAGCTAAAAGA
ATACCATTGTAGTGCACTTTATCAAAAGTCACCCTTACAGTACATTTCGA
TgttctcgaaaaacctacccttaataGCGGCATATGTCGTGGGCCAGACC
ATatgagtacccccccccctcttgGGGTTACCACCAcattaaataaaatt
gacattAAATCTTTATCTTTCACTTATCTGTGGACAGCCATTGCTATTCT
TGGACGACTTTTTGGACAATCGAGATGAAGCTGAAGAAGACAAGAAAACT
TTATTCGACGTCTTGTTCTCAAATCAAAGCAGCAGAGTAAAATTCTTTTT
CGCTGGTGACGATGATATAATCAACGGCCTCGTTTTGGCTTCACAATACA
AGAATGGAGATGTTGTCTATATCATGCATATAAGTGACTAAATGTGAAAT
TCATTACTGCAAATGTATATTTCTTTCTATTTCTAAAATGAAGGCAGAAT
AAGAAATCTGAAATCTCAAGTTTTTATCCCAAGTAGGAAGGGAGGTAACG
AAGGCGAGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016639XLOC_016639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029225-exon-sc0000730-1491911889:81299..81498TCONS_00029225-exon-sc0000730-1491911889:81299..81498Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1510915933:81299..81498TCONS_00029225-exon-sc0000730-1510915933:81299..81498Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1575043694:81299..81498TCONS_00029225-exon-sc0000730-1575043694:81299..81498Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1491911889:84005..84103TCONS_00029225-exon-sc0000730-1491911889:84005..84103Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1510915933:84005..84103TCONS_00029225-exon-sc0000730-1510915933:84005..84103Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1575043694:84005..84103TCONS_00029225-exon-sc0000730-1575043694:84005..84103Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1491911889:84565..84749TCONS_00029225-exon-sc0000730-1491911889:84565..84749Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1510915933:84565..84749TCONS_00029225-exon-sc0000730-1510915933:84565..84749Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1575043694:84565..84749TCONS_00029225-exon-sc0000730-1575043694:84565..84749Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1491911889:88336..88660TCONS_00029225-exon-sc0000730-1491911889:88336..88660Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1510915933:88336..88660TCONS_00029225-exon-sc0000730-1510915933:88336..88660Clytia hemisphaericaexon
TCONS_00029225-exon-sc0000730-1575043694:88336..88660TCONS_00029225-exon-sc0000730-1575043694:88336..88660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:81299..88660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7956	9.66495	11.1783	12.422	3.6618	2.52079	1.6144	1.49918	0.246737	0.358453	1.0814	0.409046	16.4103	14.8832	4.61191	4.13562	2.34799	1.92452	12.0939	11.5556	3.27021	3.76407	4.44406	4.39029	8.24403	10.2686	2.31196	1.09356	0.825688	0.856078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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