XLOC_027278 (gene) - C. hemisphaerica

Overview
NameXLOC_027278
Unique NameXLOC_027278
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0004374:615..7054+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_027278 ID=XLOC_027278|Name=XLOC_027278|organism=Clytia hemisphaerica|type=gene|length=6440bp|location=Sequence derived from alignment at sc0004374:615..7054+ (Clytia hemisphaerica)
TTTACATAATTAGTTTGAAACAACCGGAGATGGTGAAATCCTGGACAATG GAAGTATCGGATTTACAATCACAATGAACAACAACCCAGtttctttttct gattttggtgctgattttcaaattcaactgGGAGGTAAACTTTTTATTAC CCTATTGGGAAGTACTGTCATTAGGCTATACGACGCCCGCTCAGCACGGT TAGCGTGAGGGCGGATTTGAGACAATAACAGAACAAGTACGTCGAACACA TGCGAAGGAGTTCAACGCTTgtaaaaagacaatgaaattagaattacaaa tatcctcttctgataagttcgacatgggCTAAAACGGCCcataaagactt ttttatacATAGGAATTGCTGAAGACCTAAACCCCCCGTGGAGTGAtatg gaaaatcttgatttccaATAACAATTGGTCAGTGTTCCTTAGACTTTTTT CTTTCGCAAACTGCCAATTTGGTGTTGGAGAAATTCTGCAAATTAGTAAC AGTGATTTGCCTCAAAAACCTTCTAACCTATTTTTGTCTTTTGATACAAC CTCATAGAAATTGCTGGACAAGGGGATGCAATCAAAGCAGGTGCATTTGG AAATTATATCATTACTGGCACATCGACAGTAAAAGGCTATTATAATTTAG ACGGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCACAATCGCAC AATACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTCGTTTCCTT GTAAGTATAAAAAGcagacgagatggagtttttataagatactttaatga TTAGtcaaaaatgacgcgttctttagaaaaagtagcaaatttttttttat tactggCTAACAACCAACCAAtaaaataagagcttgtaaaaactccatat CGTCCCATAAAAAGACACCACAGACACGAGTTTTTCACAGTTCCGTCTGT AACTTCTTCCCGGGGATGGGATATTGGAGTTAGGTGAGGAGtacacgctt ttctttttataagaatagtgtactttgaaAGAGGgccaagtattcttaag aaagtgccgaAATTGaaggtgaaatattcttaacgtattcttaataatga taataataacgATATATTTCACAGTATCTCCAAAGTTTTACAATTGGCTC TTCACCTGGAAATTGAGTatgacaaatatatatgtagcGTAAAAAAAATA TGATGTTCATTAAAAATACTGAGACCGGTTGTAACTAGAGACTAGAAGGC TAAGAGTTGGTAAAGGCAAGTATGTTCGATCAAATACCGTTGTAGAGTAG TATGAGTTTGGCAAAAGTAGATTGAGTGAACGTAGTACTAGTCGCTTGTG CAAGACCGGTGTAAAACCAAAGTTTGAATTTAGATTAAGCTATAAAATAC TACAAAACTGATACAACTATTGATAACAACTAATAGAACTAATTCCTCCA TGGACAGTAAAATAAAGCACCTTTTTTTATATGAGCGTTCCATTTCATAT CCTCACTAAACGTTATACCGAggagtttgaatgttttgacaCGTTCGATG TTTTTTTCGTCAAGCGATTTTATCTCGTATTCAAACTGGTGTCGTCTGGC CATTTGTTGTGTCGAGAATAGCACGGTTTTCGTCTTTTTCGAATTGAATA GAAGATTCTGGGTTTTCGACCATCTCTGGAGATCTTTGATGTCGTTGTCG ATTTTTTCAGTACACTCTACGAAGTGTTGGGGTCTTGTGTGACGATACAG GCTGGTCTGCATATTGCATACACTCCGCATCAGTATTTTTTGACATGTCA TGAAGGTAGATATTAAATAGAACAGGGTCGAGGATACTTCCTTGGGGAAC ACCATTCAGTACGGTAAGTCTTTTCGATTCCTTGTCATTGATCTGTACGA ATTGTAGACGGTTTGATAGGTAACTTGCCATTAGTAGTAATGCAGACTTT GAAAAGTTAAGTTTATGAAGTTTTTCAATCATTATTTCGAAATCGACTGT GTCAAATGCTTTCGAGAAATCAGCCATAACAGAAAGNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNCCTTTTCGAAATCCAGATTGGTGGTTGGATAGAAGTTTA CGGGATTCGATGTGATCGACCATTTGAAGCATTAGAATTCTTTCGTATAC TTTTGAAAGGATTGGCAGAATGGATATCGGTCGGTTATCTGACGGTTCAC TTGGTTCATCGACTTTCGGAATAGGCGTGATCTTCGAGATTTTCCATTGG TTTCGAAAAGCATTCTCCTCGATTGCAGTCTTTACTATGTGACAAATTGG ACTGGTGATTTCGTTAATACAAAGTTTTAAGAATTTCGAAGGTATCTTAT CTTGTTCGGTGGAGCAATCATTACGGAGTGAGAGGATTGCTTTTCTTACG TCCGAGTAGGTGGGTTTAGAGAGGCTGAATGTGTTCGGATTATCAGGAAG TGTATCAATCAAGTTTCGCAACGTTTCTTCAGGCTTTAGGTACAGAGTTC AGTAGCCTTACTGCGGTTGTGTTATAATAAGTGCGTTTGGGTCAGCGTCG ATACTCTTTGGGTTTGGATTTAAAATCCGGTTTGAGGCGATATGGTCTAT TAGCGTACGGCCATGTCTAGTAGGTTTGGAGATATGTTGATCGAGACCAT GGTTGCGTAAAAGTTCTTTATATTCTTGTGCGATCTCTGAGTTTTCTATC AAATCAATGTTAGTATCACCGGTGATGACTATAGGGCCAGTCCAGATTTT TGAAACGTAAACAAGCAGGGTATCGAGTTTGGTCAGCCACACACGCTTAT CTGCTAGGGTAGGACTTGGTTGATACAAAGCAGCTAGGAGAAAAGAGTCG TGTTTACCTTTGATCTCCATCCACATTTGTTTGATTGAAGTGTCTTTTTC GGTGATATTGTcccttattttgaattttacggACTCGTGTATATACATGC CAACACTGCCTCCGCGTTTTTTAtatcggtgacggaattttgggaCGTAG CCGTCAATGGAGACATGATGGAGAAGCTTCGGGTTGTCCTTCAGTCAGGT TTCGGATAATGTGATGATGTCATATTTGTACGTCCAAACCATTCATTCAA AAGCAGAAAAACTCTTAcctttttagacttgacttttctacaaacatgag aaatgatcaatttgagagttttggacttttgagtgaacatttgggttaaa attacatttcttcctcaaagcttcaattcatctctaacaaaggaagcagt attttctgttaaccaaatacaaaatgactgtattcttatcaaattctgta aaattcaccctagagggtaatATTAGGGTATttttacgatttggccaatt ttcaccctgatattcttatagaagatattcttataaaagaaaaagcgtgt atgtacAGTTTGCATGCATGGCCTCCCAAAACCCAGTCTTAGAGAGGCAA CACCTGCATCAtctattacaattttttctctgaaaaagaaacaaatgtTC ATAAATTCGTTAGTTGACCAACAGACCCTTCGAGAGGCTACtttaagaaa ttttaatttttgtaaaccTAAGAGATATtttagaaagttaaaaacttaaC CCTTATCATTCACATATACCAAGCACCCATTTGGCCCTAAGTACACCGCT CGGTTTGTTTGCAAGTATTCCTCTCCCCAGGAATCGTGCGTTATTTTTAA GATTGATTGATTAGGTCTTTGAATTGAATGATCCGCCAATTTTGTCACTT TTACCACAGTGGTAGACCCAGTTCAATCTGAACAAGCAACAAATATAGCG GGAAACGAGAGGCGAAAAAATGTTCTTGATTGATCAAATTACCAGCGCTG AACTGTGGTCTACCTATTAAAGATGGCGAATTATTTNAAAAATGTTCTTG ATTGATCAAATTACCAGCGCTGAACTGTGGTCTACCTATTAAAGATGgcg aattattttgctgtaagcACCTCTGTAACTGTTAACTCCACCCCGGGCTA ACCTTCATTTTAAAATGTATCCCGTCTCCCTTAAATTATCCCCCTTTTAG TGCCCTTGTGCAGACAATAGGATCGTATGCTTTAGATATACGAGTCTTAC CAAGAAAGAGAAACTCAGGGCTTATGTTACCCCCTACACTACTATTGATA AACTGATGGACGTATTGACTGGGGATGTAACCGAATCCTCCAGTTTTACA GCACTGGCTTCTTTACGTCGCAGAACCGTTAACGGCCCTGGCTCGTGAGA GTGACAGAAACTTGTCAATGAAAACATTCATAGGAAGTTGAAAATTTGAT CATGAAAATTTCTTGCCATATTTATACATTTTAGTATGACTGTTAACGGA AAACGATCTACGGCACCAAAAGGCGCAAACATTTTCGAATTACCAGCAAG AAAGAATGTGATCGAAATATTAAATACTTTATTGACATTTCGTGTTGGTC TAGGTCGCTTACCAATGTTGAGAAGAATCCATAACAAACCATATTGTATT ATCGCTTCTAAGATGGAAATTAAGTAAGTCTACCACTTTATTCATACGCA AAGGTCCTATCTTTACCACGAAAAGTCACGTGATATCCTTTCATCCAATA AGATTTCAACATTTCATTATATTCTAATTCTGACTAAGTTTTGCACTCTG ATGATTTCGAGTACAGAAAAGTAgataaaaacacccctgtgccacagacc cggtggacccccaccccggtggaaaaatagaccaaaaaatcgtccccggt ggaaaaaatatcctacaatttcaaacGCACTGcaaaattgctctatgatt ttatccccattgaaaactgaatgtaaaaaattgcactccaaaaccatccc cactggaattttcgagctNNNNNNNNNNNNNNNNNNNNNNNNNNNNatag attttctatccccattggcattttgatagaaattttcatccccactgagg gaaaaagttctaccggggcactgagacaggggtgtcaaaaAGCTTTGTCT ATTCCACCAAAGTTGACCAGCCAATTCGCTCAAAAATTGAGTACCTTTCT GCAAagaattattttcctttttaaaaagttttgaatgtttttaagtATGT TTTACCATGTGTCTCTTTTTTACTTTATGGAGAGTATTTTATATGACTTT TCAGCTTTGGGGCCAATATTCTagaaatttgaataataaaGGTTCGAATT AGCGATAGTTGCCTGTACTTATTTTCGAACTATATTTCAATACTTTTACT CATAGGGGTGCGTGGAGCTGTTACGTCTGTCGGAAAAACTTCGTCAAGAA AAATACGGAAGAgaaggaaaagaagaagaaaaaaggtaTCTGTCATTTAA TACCTTAAATTTTTGGCGGAAATGAAATTTGGCGAGTCAGGCCATTCGTA AAAACTTTCGCATTtcgcaggaatttaatttcgcaaactTGAATTGATAA GATATGtagcaggaatttaatttcgcgaatcatgAAGATGGAGtaaaaaa atttcctgattatttattttcttagcTGTCGGTGAGAACACGTCATCGGA AAGTAGCGAAAGCGAGAACGACTCGGAAGCGGAATTCCAACTAACGACAC ATTACACTAACAaattaaagaaaacaaagaataaTGATGAGAAATCcacc aaaaatacgaaaaagtcaaaatcctCGATTaagaaatcacaaaagaaaGA CACTGTAAAAGAAAGTACATCTGAGCCTGAAACGAACGTCGGCCGGAAAG GCCGTAAACGTAAAGTCGTCAGTTACGATGAACGCGTCACGGACGACGGC GACGAAAGTGATCTTTCTTCACgtggcaaaaataataaaaccgGCGTCGG taagaaacgaaagaaaaagacGGACGGCGATGAAGAATGGACGGCGTCGT CTGCTAAAGGAAATTCATCTTTGAATCTTGGTATTAAGAGACCTATGTAC TCTAAGGACAGATctaatgataaaaaaagacaaaacgtTGCTGCAGCAAC GGCTGATTCGGCTTCTTCAGACGTCGAGAAACCAACGACGAAAAAAAAGA GGTCACAAAAGAATGAAACTAAAGATACCGGGGCTGCAACGAAACCACGG AAAAAGAATCGACGCGAAAGCAATTTTGAGGTATCTTATTATGGTGAAAT CGATGTtttcttaaactttttaagTTCAGTTTTTCTGTCCCTTGGCTTTC ACTCTAAAACTGAGTTTAAAATAAACTGCGACTCTCAAATGGGACCTAAT TGTCAGGGGCGGAATTCATTGGAGATTAAGTGCAAGAAGg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00043591TCONS_00043591Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00043591-proteinTCONS_00043591-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004374supercontigsc0004374:615..7054 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.46 8.76 8.61 9.3 40.62 30.76 12.92 14.02 7.97 8.44 10.5 7.44 8.3 10.33 7.1 8.04 11.45 10.96 6.12 6.09 10.15 9.75 17.87 16.46 21.02 20.1 5.6 6.19 17.05 17.54