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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043591 ID=TCONS_00043591|Name=TCONS_00043591|organism=Clytia hemisphaerica|type=transcript|length=2093bp
TTTACATAATTAGTTTGAAACAACCGGAGATGGTGAAATCCTGGACAATG
GAAGTATCGGATTTACAATCACAATGAACAACAACCCAGtttctttttct
gattttggtgctgattttcaaattcaactgGGAGAAATTGCTGGACAAGG
GGATGCAATCAAAGCAGGTGCATTTGGAAATTATATCATTACTGGCACAT
CGACAGTAAAAGGCTATTATAATTTAGACGGTGATTTCCAACTAGTTTTG
AGTGCTGATATGCCGGCACAATCGCACAATACTGTTTTCAAATATGCTGG
CACAAGAGCTCACTTTTTCGTTTCCTTTATGACTGTTAACGGAAAACGAT
CTACGGCACCAAAAGGCGCAAACATTTTCGAATTACCAGCAAGAAAGAAT
GTGATCGAAATATTAAATACTTTATTGACATTTCGTGTTGGTCTAGGTCG
CTTACCAATGTTGAGAAGAATCCATAACAAACCATATTGTATTATCGCTT
CTAAGATGGAAATTAAGTAAGTCTACCACTTTATTCATACGCAAAGGTCC
TATCTTTACCACGAAAAGTCACGTGATATCCTTTCATCCAATAAGATTTC
AACATTTCATTATATTCTAATTCTGACTAAGTTTTGCACTCTGATGATTT
CGAGTACAGAAAAGTAgataaaaacacccctgtgccacagacccggtgga
cccccaccccggtggaaaaatagaccaaaaaatcgtccccggtggaaaaa
atatcctacaatttcaaacGCACTGcaaaattgctctatgattttatccc
cattgaaaactgaatgtaaaaaattgcactccaaaaccatccccactgga
attttcgagctNNNNNNNNNNNNNNNNNNNNNNNNNNNNatagattttct
atccccattggcattttgatagaaattttcatccccactgagggaaaaag
ttctaccggggcactgagacaggggtgtcaaaaAGCTTTGTCTATTCCAC
CAAAGTTGACCAGCCAATTCGCTCAAAAATTGAGTACCTTTCTGCAAaga
attattttcctttttaaaaagttttgaatgtttttaagtATGTTTTACCA
TGTGTCTCTTTTTTACTTTATGGAGAGTATTTTATATGACTTTTCAGCTT
TGGGGCCAATATTCTagaaatttgaataataaaGGTTCGAATTAGCGATA
GTTGCCTGTACTTATTTTCGAACTATATTTCAATACTTTTACTCATAGGG
GTGCGTGGAGCTGTTACGTCTGTCGGAAAAACTTCGTCAAGAAAAATACG
GAAGAgaaggaaaagaagaagaaaaaagcTGTCGGTGAGAACACGTCATC
GGAAAGTAGCGAAAGCGAGAACGACTCGGAAGCGGAATTCCAACTAACGA
CACATTACACTAACAaattaaagaaaacaaagaataaTGATGAGAAATCc
accaaaaatacgaaaaagtcaaaatcctCGATTaagaaatcacaaaagaa
aGACACTGTAAAAGAAAGTACATCTGAGCCTGAAACGAACGTCGGCCGGA
AAGGCCGTAAACGTAAAGTCGTCAGTTACGATGAACGCGTCACGGACGAC
GGCGACGAAAGTGATCTTTCTTCACgtggcaaaaataataaaaccgGCGT
CGGtaagaaacgaaagaaaaagacGGACGGCGATGAAGAATGGACGGCGT
CGTCTGCTAAAGGAAATTCATCTTTGAATCTTGGTATTAAGAGACCTATG
TACTCTAAGGACAGATctaatgataaaaaaagacaaaacgtTGCTGCAGC
AACGGCTGATTCGGCTTCTTCAGACGTCGAGAAACCAACGACGAAAAAAA
AGAGGTCACAAAAGAATGAAACTAAAGATACCGGGGCTGCAACGAAACCA
CGGAAAAAGAATCGACGCGAAAGCAATTTTGAGGTATCTTATTATGGTGA
AATCGATGTtttcttaaactttttaagTTCAGTTTTTCTGTCCCTTGGCT
TTCACTCTAAAACTGAGTTTAAAATAAACTGCGACTCTCAAATGGGACCT
AATTGTCAGGGGCGGAATTCATTGGAGATTAAGTGCAAGAAGg Run BLAST on NCBI protein sequence of TCONS_00043591-protein >TCONS_00043591-protein ID=TCONS_00043591-protein|Name=TCONS_00043591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MNNNPVSFSDFGADFQIQLGEIAGQGDAIKAGAFGNYIITGTSTVKGYYN
LDGDFQLVLSADMPAQSHNTVFKYAGTRAHFFVSFMTVNGKRSTAPKGAN
IFELPARKNVIEILNTLLTFRVGLGRLPMLRRIHNKPYCIIASKMEIK Run BLAST on NCBI transcript from alignment at sc0004374:615..7054+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043591 ID=TCONS_00043591|Name=TCONS_00043591|organism=Clytia hemisphaerica|type=transcript|length=6440bp|location=Sequence derived from alignment at sc0004374:615..7054+ (Clytia hemisphaerica)
TTTACATAATTAGTTTGAAACAACCGGAGATGGTGAAATCCTGGACAATG
GAAGTATCGGATTTACAATCACAATGAACAACAACCCAGtttctttttct
gattttggtgctgattttcaaattcaactgGGAGGTAAACTTTTTATTAC
CCTATTGGGAAGTACTGTCATTAGGCTATACGACGCCCGCTCAGCACGGT
TAGCGTGAGGGCGGATTTGAGACAATAACAGAACAAGTACGTCGAACACA
TGCGAAGGAGTTCAACGCTTgtaaaaagacaatgaaattagaattacaaa
tatcctcttctgataagttcgacatgggCTAAAACGGCCcataaagactt
ttttatacATAGGAATTGCTGAAGACCTAAACCCCCCGTGGAGTGAtatg
gaaaatcttgatttccaATAACAATTGGTCAGTGTTCCTTAGACTTTTTT
CTTTCGCAAACTGCCAATTTGGTGTTGGAGAAATTCTGCAAATTAGTAAC
AGTGATTTGCCTCAAAAACCTTCTAACCTATTTTTGTCTTTTGATACAAC
CTCATAGAAATTGCTGGACAAGGGGATGCAATCAAAGCAGGTGCATTTGG
AAATTATATCATTACTGGCACATCGACAGTAAAAGGCTATTATAATTTAG
ACGGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCACAATCGCAC
AATACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTCGTTTCCTT
GTAAGTATAAAAAGcagacgagatggagtttttataagatactttaatga
TTAGtcaaaaatgacgcgttctttagaaaaagtagcaaatttttttttat
tactggCTAACAACCAACCAAtaaaataagagcttgtaaaaactccatat
CGTCCCATAAAAAGACACCACAGACACGAGTTTTTCACAGTTCCGTCTGT
AACTTCTTCCCGGGGATGGGATATTGGAGTTAGGTGAGGAGtacacgctt
ttctttttataagaatagtgtactttgaaAGAGGgccaagtattcttaag
aaagtgccgaAATTGaaggtgaaatattcttaacgtattcttaataatga
taataataacgATATATTTCACAGTATCTCCAAAGTTTTACAATTGGCTC
TTCACCTGGAAATTGAGTatgacaaatatatatgtagcGTAAAAAAAATA
TGATGTTCATTAAAAATACTGAGACCGGTTGTAACTAGAGACTAGAAGGC
TAAGAGTTGGTAAAGGCAAGTATGTTCGATCAAATACCGTTGTAGAGTAG
TATGAGTTTGGCAAAAGTAGATTGAGTGAACGTAGTACTAGTCGCTTGTG
CAAGACCGGTGTAAAACCAAAGTTTGAATTTAGATTAAGCTATAAAATAC
TACAAAACTGATACAACTATTGATAACAACTAATAGAACTAATTCCTCCA
TGGACAGTAAAATAAAGCACCTTTTTTTATATGAGCGTTCCATTTCATAT
CCTCACTAAACGTTATACCGAggagtttgaatgttttgacaCGTTCGATG
TTTTTTTCGTCAAGCGATTTTATCTCGTATTCAAACTGGTGTCGTCTGGC
CATTTGTTGTGTCGAGAATAGCACGGTTTTCGTCTTTTTCGAATTGAATA
GAAGATTCTGGGTTTTCGACCATCTCTGGAGATCTTTGATGTCGTTGTCG
ATTTTTTCAGTACACTCTACGAAGTGTTGGGGTCTTGTGTGACGATACAG
GCTGGTCTGCATATTGCATACACTCCGCATCAGTATTTTTTGACATGTCA
TGAAGGTAGATATTAAATAGAACAGGGTCGAGGATACTTCCTTGGGGAAC
ACCATTCAGTACGGTAAGTCTTTTCGATTCCTTGTCATTGATCTGTACGA
ATTGTAGACGGTTTGATAGGTAACTTGCCATTAGTAGTAATGCAGACTTT
GAAAAGTTAAGTTTATGAAGTTTTTCAATCATTATTTCGAAATCGACTGT
GTCAAATGCTTTCGAGAAATCAGCCATAACAGAAAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCTTTTCGAAATCCAGATTGGTGGTTGGATAGAAGTTTA
CGGGATTCGATGTGATCGACCATTTGAAGCATTAGAATTCTTTCGTATAC
TTTTGAAAGGATTGGCAGAATGGATATCGGTCGGTTATCTGACGGTTCAC
TTGGTTCATCGACTTTCGGAATAGGCGTGATCTTCGAGATTTTCCATTGG
TTTCGAAAAGCATTCTCCTCGATTGCAGTCTTTACTATGTGACAAATTGG
ACTGGTGATTTCGTTAATACAAAGTTTTAAGAATTTCGAAGGTATCTTAT
CTTGTTCGGTGGAGCAATCATTACGGAGTGAGAGGATTGCTTTTCTTACG
TCCGAGTAGGTGGGTTTAGAGAGGCTGAATGTGTTCGGATTATCAGGAAG
TGTATCAATCAAGTTTCGCAACGTTTCTTCAGGCTTTAGGTACAGAGTTC
AGTAGCCTTACTGCGGTTGTGTTATAATAAGTGCGTTTGGGTCAGCGTCG
ATACTCTTTGGGTTTGGATTTAAAATCCGGTTTGAGGCGATATGGTCTAT
TAGCGTACGGCCATGTCTAGTAGGTTTGGAGATATGTTGATCGAGACCAT
GGTTGCGTAAAAGTTCTTTATATTCTTGTGCGATCTCTGAGTTTTCTATC
AAATCAATGTTAGTATCACCGGTGATGACTATAGGGCCAGTCCAGATTTT
TGAAACGTAAACAAGCAGGGTATCGAGTTTGGTCAGCCACACACGCTTAT
CTGCTAGGGTAGGACTTGGTTGATACAAAGCAGCTAGGAGAAAAGAGTCG
TGTTTACCTTTGATCTCCATCCACATTTGTTTGATTGAAGTGTCTTTTTC
GGTGATATTGTcccttattttgaattttacggACTCGTGTATATACATGC
CAACACTGCCTCCGCGTTTTTTAtatcggtgacggaattttgggaCGTAG
CCGTCAATGGAGACATGATGGAGAAGCTTCGGGTTGTCCTTCAGTCAGGT
TTCGGATAATGTGATGATGTCATATTTGTACGTCCAAACCATTCATTCAA
AAGCAGAAAAACTCTTAcctttttagacttgacttttctacaaacatgag
aaatgatcaatttgagagttttggacttttgagtgaacatttgggttaaa
attacatttcttcctcaaagcttcaattcatctctaacaaaggaagcagt
attttctgttaaccaaatacaaaatgactgtattcttatcaaattctgta
aaattcaccctagagggtaatATTAGGGTATttttacgatttggccaatt
ttcaccctgatattcttatagaagatattcttataaaagaaaaagcgtgt
atgtacAGTTTGCATGCATGGCCTCCCAAAACCCAGTCTTAGAGAGGCAA
CACCTGCATCAtctattacaattttttctctgaaaaagaaacaaatgtTC
ATAAATTCGTTAGTTGACCAACAGACCCTTCGAGAGGCTACtttaagaaa
ttttaatttttgtaaaccTAAGAGATATtttagaaagttaaaaacttaaC
CCTTATCATTCACATATACCAAGCACCCATTTGGCCCTAAGTACACCGCT
CGGTTTGTTTGCAAGTATTCCTCTCCCCAGGAATCGTGCGTTATTTTTAA
GATTGATTGATTAGGTCTTTGAATTGAATGATCCGCCAATTTTGTCACTT
TTACCACAGTGGTAGACCCAGTTCAATCTGAACAAGCAACAAATATAGCG
GGAAACGAGAGGCGAAAAAATGTTCTTGATTGATCAAATTACCAGCGCTG
AACTGTGGTCTACCTATTAAAGATGGCGAATTATTTNAAAAATGTTCTTG
ATTGATCAAATTACCAGCGCTGAACTGTGGTCTACCTATTAAAGATGgcg
aattattttgctgtaagcACCTCTGTAACTGTTAACTCCACCCCGGGCTA
ACCTTCATTTTAAAATGTATCCCGTCTCCCTTAAATTATCCCCCTTTTAG
TGCCCTTGTGCAGACAATAGGATCGTATGCTTTAGATATACGAGTCTTAC
CAAGAAAGAGAAACTCAGGGCTTATGTTACCCCCTACACTACTATTGATA
AACTGATGGACGTATTGACTGGGGATGTAACCGAATCCTCCAGTTTTACA
GCACTGGCTTCTTTACGTCGCAGAACCGTTAACGGCCCTGGCTCGTGAGA
GTGACAGAAACTTGTCAATGAAAACATTCATAGGAAGTTGAAAATTTGAT
CATGAAAATTTCTTGCCATATTTATACATTTTAGTATGACTGTTAACGGA
AAACGATCTACGGCACCAAAAGGCGCAAACATTTTCGAATTACCAGCAAG
AAAGAATGTGATCGAAATATTAAATACTTTATTGACATTTCGTGTTGGTC
TAGGTCGCTTACCAATGTTGAGAAGAATCCATAACAAACCATATTGTATT
ATCGCTTCTAAGATGGAAATTAAGTAAGTCTACCACTTTATTCATACGCA
AAGGTCCTATCTTTACCACGAAAAGTCACGTGATATCCTTTCATCCAATA
AGATTTCAACATTTCATTATATTCTAATTCTGACTAAGTTTTGCACTCTG
ATGATTTCGAGTACAGAAAAGTAgataaaaacacccctgtgccacagacc
cggtggacccccaccccggtggaaaaatagaccaaaaaatcgtccccggt
ggaaaaaatatcctacaatttcaaacGCACTGcaaaattgctctatgatt
ttatccccattgaaaactgaatgtaaaaaattgcactccaaaaccatccc
cactggaattttcgagctNNNNNNNNNNNNNNNNNNNNNNNNNNNNatag
attttctatccccattggcattttgatagaaattttcatccccactgagg
gaaaaagttctaccggggcactgagacaggggtgtcaaaaAGCTTTGTCT
ATTCCACCAAAGTTGACCAGCCAATTCGCTCAAAAATTGAGTACCTTTCT
GCAAagaattattttcctttttaaaaagttttgaatgtttttaagtATGT
TTTACCATGTGTCTCTTTTTTACTTTATGGAGAGTATTTTATATGACTTT
TCAGCTTTGGGGCCAATATTCTagaaatttgaataataaaGGTTCGAATT
AGCGATAGTTGCCTGTACTTATTTTCGAACTATATTTCAATACTTTTACT
CATAGGGGTGCGTGGAGCTGTTACGTCTGTCGGAAAAACTTCGTCAAGAA
AAATACGGAAGAgaaggaaaagaagaagaaaaaaggtaTCTGTCATTTAA
TACCTTAAATTTTTGGCGGAAATGAAATTTGGCGAGTCAGGCCATTCGTA
AAAACTTTCGCATTtcgcaggaatttaatttcgcaaactTGAATTGATAA
GATATGtagcaggaatttaatttcgcgaatcatgAAGATGGAGtaaaaaa
atttcctgattatttattttcttagcTGTCGGTGAGAACACGTCATCGGA
AAGTAGCGAAAGCGAGAACGACTCGGAAGCGGAATTCCAACTAACGACAC
ATTACACTAACAaattaaagaaaacaaagaataaTGATGAGAAATCcacc
aaaaatacgaaaaagtcaaaatcctCGATTaagaaatcacaaaagaaaGA
CACTGTAAAAGAAAGTACATCTGAGCCTGAAACGAACGTCGGCCGGAAAG
GCCGTAAACGTAAAGTCGTCAGTTACGATGAACGCGTCACGGACGACGGC
GACGAAAGTGATCTTTCTTCACgtggcaaaaataataaaaccgGCGTCGG
taagaaacgaaagaaaaagacGGACGGCGATGAAGAATGGACGGCGTCGT
CTGCTAAAGGAAATTCATCTTTGAATCTTGGTATTAAGAGACCTATGTAC
TCTAAGGACAGATctaatgataaaaaaagacaaaacgtTGCTGCAGCAAC
GGCTGATTCGGCTTCTTCAGACGTCGAGAAACCAACGACGAAAAAAAAGA
GGTCACAAAAGAATGAAACTAAAGATACCGGGGCTGCAACGAAACCACGG
AAAAAGAATCGACGCGAAAGCAATTTTGAGGTATCTTATTATGGTGAAAT
CGATGTtttcttaaactttttaagTTCAGTTTTTCTGTCCCTTGGCTTTC
ACTCTAAAACTGAGTTTAAAATAAACTGCGACTCTCAAATGGGACCTAAT
TGTCAGGGGCGGAATTCATTGGAGATTAAGTGCAAGAAGg Coding sequence (CDS) from alignment at sc0004374:615..7054+ >TCONS_00043591 ID=TCONS_00043591|Name=TCONS_00043591|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0004374:615..7054+ (Clytia hemisphaerica)
ATGAACAACAACCCAGtttctttttctgattttggtgctgattttcaaat
tcaactgGGAGAAATTGCTGGACAAGGGGATGCAATCAAAGCAGGTGCAT
TTGGAAATTATATCATTACTGGCACATCGACAGTAAAAGGCTATTATAAT
TTAGACGGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCACAATC
GCACAATACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTCGTTT
CCTTTATGACTGTTAACGGAAAACGATCTACGGCACCAAAAGGCGCAAAC
ATTTTCGAATTACCAGCAAGAAAGAATGTGATCGAAATATTAAATACTTT
ATTGACATTTCGTGTTGGTCTAGGTCGCTTACCAATGTTGAGAAGAATCC
ATAACAAACCATATTGTATTATCGCTTCTAAGATGGAAATTAAGTAAATG
AACAACAACCCAGtttctttttctgattttggtgctgattttcaaattca
actgGGAGAAATTGCTGGACAAGGGGATGCAATCAAAGCAGGTGCATTTG
GAAATTATATCATTACTGGCACATCGACAGTAAAAGGCTATTATAATTTA
GACGGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCACAATCGCA
CAATACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTCGTTTCCT
TTATGACTGTTAACGGAAAACGATCTACGGCACCAAAAGGCGCAAACATT
TTCGAATTACCAGCAAGAAAGAATGTGATCGAAATATTAAATACTTTATT
GACATTTCGTGTTGGTCTAGGTCGCTTACCAATGTTGAGAAGAATCCATA
ACAAACCATATTGTATTATCGCTTCTAAGATGGAAATTAAGTAAATGAAC
AACAACCCAGtttctttttctgattttggtgctgattttcaaattcaact
gGGAGAAATTGCTGGACAAGGGGATGCAATCAAAGCAGGTGCATTTGGAA
ATTATATCATTACTGGCACATCGACAGTAAAAGGCTATTATAATTTAGAC
GGTGATTTCCAACTAGTTTTGAGTGCTGATATGCCGGCACAATCGCACAA
TACTGTTTTCAAATATGCTGGCACAAGAGCTCACTTTTTCGTTTCCTTTA
TGACTGTTAACGGAAAACGATCTACGGCACCAAAAGGCGCAAACATTTTC
GAATTACCAGCAAGAAAGAATGTGATCGAAATATTAAATACTTTATTGAC
ATTTCGTGTTGGTCTAGGTCGCTTACCAATGTTGAGAAGAATCCATAACA
AACCATATTGTATTATCGCTTCTAAGATGGAAATTAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043591-exon-sc0004374-1491911889:615..748 | TCONS_00043591-exon-sc0004374-1491911889:615..748 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1510915933:615..748 | TCONS_00043591-exon-sc0004374-1510915933:615..748 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1575043694:615..748 | TCONS_00043591-exon-sc0004374-1575043694:615..748 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1491911889:1172..1364 | TCONS_00043591-exon-sc0004374-1491911889:1172..1364 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1510915933:1172..1364 | TCONS_00043591-exon-sc0004374-1510915933:1172..1364 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1575043694:1172..1364 | TCONS_00043591-exon-sc0004374-1575043694:1172..1364 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1491911889:5099..6099 | TCONS_00043591-exon-sc0004374-1491911889:5099..6099 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1510915933:5099..6099 | TCONS_00043591-exon-sc0004374-1510915933:5099..6099 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1575043694:5099..6099 | TCONS_00043591-exon-sc0004374-1575043694:5099..6099 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1491911889:6290..7054 | TCONS_00043591-exon-sc0004374-1491911889:6290..7054 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1510915933:6290..7054 | TCONS_00043591-exon-sc0004374-1510915933:6290..7054 | Clytia hemisphaerica | exon |
| TCONS_00043591-exon-sc0004374-1575043694:6290..7054 | TCONS_00043591-exon-sc0004374-1575043694:6290..7054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004374 | supercontig | sc0004374:615..7054 + |
Blast
The following BLAST results are available for this feature:
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