XLOC_029389 (gene) - C. hemisphaerica

Overview
NameXLOC_029389
Unique NameXLOC_029389
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_105:159196..168217+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029389 ID=XLOC_029389|Name=XLOC_029389|organism=Clytia hemisphaerica|type=gene|length=9022bp|location=Sequence derived from alignment at scaffold_105:159196..168217+ (Clytia hemisphaerica)
gtagatatcaattatatatgtgttaactgcataaccaggtaggtccataa
aacttgtttgattatgaaataatcttttttttccatttcagcAAAAGCGG
CTTTTCAACTTTCACCATGGATTTGCGGAATGCCATCCTGGTTTCCCTTT
TGGCGTTGTGTGGAGTATCTTTCATCTCTGGTAAGTGTGGATGGAGCTTT
GTTGCAAGGGTAACACTTTTAAGAACCTCCTTACTTTAGCTAAAACTTCt
attactcgaatgtctcttttATTCCAACAAGTTTCtcggtcccttcagtt
aacaatgcctcatAAACTACTTtaatatgataaattttcgcgCGGATTAG
ATTAAAATTTGGAAAGCCCTTATCcgcgaaaattttttaaacaaaactgt
cAAATAAACTACTTTTTAAATGTATTGGCATCAAAGGAGTGCTATTCGAT
GCATtttttggaagcaaaaaaaacacaaaatcgtgaaaatattgtctccc
aATAATGCCATCCGCGAAATCAAGTCtctgcgaaattttaagattttgcg
gATAAGTTCAACCGGGAAATTGAATTctcgcaaaagtttatcccggcagt
ttctataactcgaaccttctatgatttaaaatatttgactttttgtGGCG
AATTTCTAACTCAATGGAAcgaattttccgaaaatctttACAGTTGCttg
aatttctaaaagattttctgttGTCCACTATAGAAAGTATCATAGCGAAG
TTGATTAGCATGACTCGGCCATTTTTCCAAGCAACAAGTTAGGTGTtccg
agtttatcgttctaaaTCTGCAATTCTGAACTTTGCTTAAAGCTTATTTG
ACGCCGATCGATACTTTGATAATAAGTTTTAGCCTAATTAGATTTATTCG
AAATCctacttttcttttgatttttgatgaatAACTCTCAATAAATATCC
TTTAAGGGCCATTCCAGGAAATTGTCAACTACGATTGGAGTCTCTGCCCG
ATTGAACCGCCTCTATGGGTCGTATCAAATGGCGTATGGGTCGCAGCACT
CCTAGGTCCCTACTGGCGgtttccagtcaaaaatgagCGTGGCATAATGT
ACCTATTCCTCTGGAATAGCCATTAACCATCTAATGATTGCTTACTNAAT
AATGTACCTCTTCCTATGGAATAGCCATTAACCATCTAATGATTTCCTAC
TGTATgtgaatgtttttcttttgttgacaGGCGTGAATGCAGGTGGTTAT
ATGGCTTGCACAAGTAATGGAACGAACCCTGTCAACTGCACATCTTCTGC
ATCAAGTATGTTTATTCTATAAGGGGATGTTACTCGTGCATAAAATTCCC
GTTCCACATGAGGGTAAAACACAGTACATGGCGAATGGACTTTAGTTACA
AGTTTTTATCGCCAAGGATTTTTTCTGACGGATGTTTGCGCGCGTACCAA
AAGGTGGACTTGATTAAGAAGATAATGGTCTCTCTGCTATGATGATATAA
CGTCCTTGACTCTCTTATATCTTCTCCCTCTCTTCTAACAGTGGCGTCGA
TCGAATTATACTGTAATGACAATGGATTGAGAGCAGCCTTCAACCACAGC
GAATTGAAAGCAAACATCCTTCCCTACACCATCATGTTCATGAAAAATGG
GAACGAGTCATGTGACTCCATTAACGCCACTGACGCCCTTAATCACGCCG
ATGAACAAGTCTGGATTTGGGCAAATTATTCTGATTGCGGAATTGAGGTG
AGAGTTTGTTTTATCTTGAtgtgaagaaaataaaaactttagaatAACAC
CATTACTCCCTCCGAGTTGAAGATATTTACCTTACTTCAAGATAACAAAT
TTAACTGAAACTTTCACAATAAAACTCATCATCATTACCAAACTTGGGAG
AGAGATATTTCTtcgtgttttttgtttttgtccaATCTATAGGGGAaata
tgatgatttttttccGGTAATAATACAAGCTTGcagtgtgtcccgaaaaa
agcggacATATTTTTATATGAAGTGAACTAAGattgaaattaaatattta
atTCCCAAGACGAATGAATAGATATTTGAGATTTAAATATTAAGTATACA
AGATTTTGCATAATTTATCCATGACACACTATATAATAAATCGCTTGTTT
TTTTCAGTTGCGTTAAATTATTTGATTCCGCCCTCTTTCGAGAAGGCGCG
AGATTACTGAAGTTTTTCAACAAGCCGTGAAATTACTGAAGTTTTTCAAC
AAGCCGTTACTCTAATTTTTCAACAAGCCGTTACTCTAATTTTTCAACAA
ACCGTTACTCTAATTTTTCAACAAGCCGTTACTCTAATTTTTCAACAAGC
CGTCACTTTATTTTTCAACAAGCCGTTACTCTATTTTTTCAACAAACCGT
TACTCTAATTTCTCAACAAGCCGTTACTGTAATTTTTCAACAAGCCGTTA
CTCTATTTTTTCAACAAGCCGTTACTATATTTTTTCACAGGCGTACGTTG
AAGGGGAAAATATTGCGTTTGAACAAACCATCATTGTGGAGTATGGGTCC
AAGTCTTCACATGATCTTATTTACAGGTGTGTATTAAGTTTTCGATATAT
TGAAGTTAATGTACGATGTGCTAGAAAGCCGAAAATAATATAAGATATAC
CACCAGATTTTATTAGGAAAAGGTCGTCGCTTTTAAAGAGGCTAGGCAAA
TTTATGCAAAATGTTAAGTCTTTCTGACAAAAAACTTTGGGCAAGTGACT
ATCATTGTTGAAttattaaagggataatcagatggtttgtagTATTTAGC
ATGTAGGATCCTTCAattgtcctgagcaaaatctcaaaatatttttgcgt
tactatttccaaagtcgagatatttaagttacaattttttggcttttagg
atgaaaacaatagaatttcaacgtgagagccgtgtaagaacccattttca
aaaatttcaaattttgatatctcgattttggaaaattgttacacaaaaat
tCTTTCAGGTTTTACTAAGGACCACATAGATTTCTTTAATCTgaatatct
cagaccatctgattatcccttcaAGGCCTTTAATTTACTTTAAGCCTGTT
TGACTTATCAATAAATTATAGACCTCTCTGTTATGAATTTCATACTAAAG
TATTATTCCTATCCTTCATAGATATTTCAACGATACATACAAAGTGCAAT
GTTTATTGAACCGCAACGTTACCAAAGATCTCAGTATCAatgtcaaagaa
agaaaaacactcTCCACCAAAGTCAGTAAGTCGAACTTTCCATAAACAAA
GCTGTACCAGAAAATTTTCCACATTCCTCTAACCTAGATTCTCTCAAAAC
CAACCTTTTACAccataaaaatctttcaatgtCAAAGAAAGGAAAACACT
CTCCACCAAAGTCAGTAAGTCGAACTTTCTATAAACAAAGCTGTACCAGA
AATTTCTGTAGATATCAAATCTATGATGATAAATCGGATGAGCAAAATGG
CTTTAGAAAGGACCGTGGAACAACAGACGGTATCTACACAGTCAAACGAG
TTCaccaaatttcaaacaaaaagtcTGAACCTACATTTCTTCTATTTGTT
GATCTAAGTGCAGCTTTCGACCACATACCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCAAGTAATTAAAAATGAGAATTGTTCGA
TTGAAAAGTTTTGTGGACTGGCTATTGCAAAGAAAAATGATTTACAACCG
AAGCTACCAGAAAATTGTCCCTCACGTAGCACGACAGATCTCCGTAGATA
TCACGTCTGTTTACAGTAAAAGCTACCGGTATTGAATCAAGCTATATTCT
CTTGAAACCAGCCCTCTACACTTCAACATTGTTTTTCATCGACATTACCG
TTCTCGCTATTTTAAACTACACCTTTAATGTTTCTTCATAGTCATCATAC
accccggtctggaaggcttATTATTGTTAAGTGTTGGAGCTGACGTACGT
AAATAGATCTGGTTTGCAtattttttgatcatgtgactAGAAAATAAACC
AATCGCAAGTATCGAAaatggtaacgtgatcaaaaagtatgcaaatctaA
GGGAAGTTTGACAATAAAGCTAAACCAATACACTGCCAGACCAGGGTTTC
TTTGTAATAACTATGGTTTCCTTTCCCGCTTTCTTTGAAATTCTAGAAAT
AATTTTCTCCAAATTCTCTTATCATTTCAGATCAAACGGCGAACTTTGAG
TTCGACTTCAACGTGTTTAGGAAAGGTGAAGCAACAGCTGTCAACAACAT
TCTCTCCATCGGAGAAGAACTCTCCTTTGTTCTGGAAATGGTGGACACCA
CAACCAGTACCGTCAAAGCGTCGCCACAAGACTGTTTCGCTACACGGTTG
GATGGTTCTGGTAGATATGACCTCATCAAGGACAGGTGAGACGATATTTA
AAACCTATTATACAATACCAgatataccttaaaggaagaaattttggcgg
gaatttaatttggcagatggccgaaaaattttttagagggaatttactat
ggcggatggacgaaaaaactaaatttggcgggaatttaatttggcgtttg
ctgaaaaatgtAACCTTAAAATGGataaatttcttccttcaaggtaCTCC
TGACATACTAGGAAAACTCTTTATCTAAACTGGACTTAGAGTAATTGATA
TAAGATTACAGTTCTATGTTCAGTCAAGAGATATTCCcaattcccaagat
gattgaataggtttttgagATTCAAACATTTTAAGTAtataagtcataaa
atttggcataaatgaagtttttacttttatgaaaatgtgtccgctttttt
tgggacacactgtattttgataatgttttcaaCATGTAGGTGTGAAGGGG
ATGACGACACAGTGTCTATCACAACACCAAATACCGACCTGCAAGTCTTT
AAATGGGACATGACCGCATTCCGGTACTTCGGAGATTCGGATGGTGTCAA
AATCACTTGTTCCGTATTGGTGTGTCGTAACATCGATCCGTCACAGTTGA
GTGAGAAATGTTTAAGGTGCGGACAGACCGCGCGTAAACGTCGGCGAAGA
GAGGCGGACGGTTTTAGCGTTCAAGAAGTGGGAGTTGTAGATGAACAAAT
GGTGACTAGTCAACCTATCTATATCATCGATCGTAGATCAGGTATCtttg
ttgtgtttttttctttatctcATGAAAGTGTTTGGTGCCCCTCCGCTTTA
GAAGCCTCTCTTAGAAAGTGGAGAAATACGGAAAAACGGATTGCGATCTA
CCCTACCCCTTTGGAAAGCAGAGCCCTCGGATCGCACTTTCATCTATCAT
TTAAGTATTAAATAtcattcatttaaaaaatcGCTTGTGATCTGCCGACA
TGAAGTTTTATtcatctggcacccagatgcagaaattttcattcgaCACG
CCAAAGCTCTGAAGTccgagaaaattttcaacaaaataaaattagaaagc
aattggtccgctcctttaaAGCTTAGCATGGGCGACCGCCAATCTGCTTT
ATGAATTTCATATACTAAAGATTTAATCTCATCACCATTTTAAATATCTA
CACTTTTACACAGGGGGTAACCGGGCTGTGACATAGATCATTTCGTTGGT
ATTGGAAAAAAGTTGAGATAATCTTTAAAAGCTAAACTAATTCAATTAAT
AGCTCTTAACGGGCCCGAACGATCCTTCAATTTGAAACACTAAGTGCCGC
GAAGAGTCAGCCGCAGTATTCGGTGAAGACAGGGATTCGATGGAAAAGAA
ATTATGGTGTTTAGGCATGGctaaatttagaacgccatgtgtTAGGCTAA
TATTGTTTATATTATCGTGTagtaataaacaaaaaatgttaaaattgttT
TCATCAACTACGAACATAACAACAACAGAAATTTGGTCCACAATGCCCCA
TTTTACATGTAGAATAGCGGTATGACATCAAACTGCTGTAAATGTGCAAC
GATTCGAAGCAGGTCCATCGAGCATCTAAGAATGAAACAAAATGGAAATT
GACAAAGAAtattacaaaaacaaagcagGCCCGACTAGCTCAGCCTGTTT
GATAAATAATCAAGATTTTCACTGGCAAATATAAAAGAttcctttttagt
ttttttgttggTTATTTGCGAGATACTAGTTAACTCGCGCAGTAGTGTAG
CCTTCCACTCCAGGAGGTCGGGGCTCGATTCCCACTCGATGTTGTGATTC
ACATGACAAGTTAATGTACCTTCACCCGGGCATACTCATGTAATACGAGT
ATGCATTAAATAATTTGGTAGACAAAACTCCAGAAGCCTGACGGTAACTG
TGCTAGGTATCGATTCCACAAAACACCGATAAGGTTAGAGTACGCTGACC
TTGCTCCCTAACCCTTTCAATGGCTCGCAAGCTGACAGGCAGTATAAACT
GCAGCGTAAGACGGTTCTAACGAGACGACTTCTAGACCGCTCGATACAGC
ATCGTCTGTAAGGAGAAGCCAGTCATCACTCACTAACCGAAACACGGAAA
TTCACTACATCAATATTTCCACAACTACTTACTTTTGTTATATCCACCGG
GTAAATTTTTCTCAGCACTGCATACATCATCGCACGTTTGTTTACTGCCG
TACTTACATGTCCTCGGTATCGCCATTATGTGGCCTCTCGCTTCTTTCGA
TACTGAAAAGCCAACACAAGCTGCATTAGCCTGGATGGCAGCTAAGTCGT
GAGCCCCCGTGTTGCCATAGAATAAGCACGCGAAGGCTAGCAAAATTGTT
ACTTTAAACATGTCTACATCCACCGCAATTGTGAGATTCACCtttatctc
aaaatttcatcttAAATACGGAGTGATAGATGATTTGCAATAAAGTTGTG
AAAACCTGTCTAAACACAGCTTTCCAAATTTTTGCATAGTACTGTCAACC
cacttgtttgtttttatcttcttaATATATTGCAACAGATCTCTTTGTGA
CAACATTTCTTTAAACACTCTCTACCCTTACGTCACGTGGTTCGTTGTAT
CTTTAAATAAACTACACCAAGGAAAATGTTTCTGGCTTACTTTTCATGAC
CGCCATCTTACGAGAATCATATACCAGACCAGAAagcaaaaatagggaaa
actgtGAATATTATTGTTTCTTTCTTCTTCACGAGAGAAacacatcccct
tctcacagacccggtaggatttttccatccagtggggatgaaaataacgg
accaaaaatcgatgaaaattgatattcctatattttttatggctgggaat
tccaattcttttgtttcaagtcAGTAAATTCAGTatggatgggaaaaata
gcataatattttgcagtgaagattagtttatttgattattatcaatgggg
acaaaaattggaggataatttcccaccggggacgatattttggattccca
gtgggtctgtgggaAGGGGGTGTAGAAACCATCCCCATAGTGCTCAAAGA
CATCTTTCCCGACTAGGAAAACATGCTACCTTTCTGACTCAGAAAATATT
TTCTAGCCGTTTCAAGAATCTTTCCACCCTTCTCATTAGGGAAATATTTT
CCATTAAGACAATACTTGCCTTGCCGTTCATGTTGATAACTGccctttct
gaccaatcttgctccacatccttgtcaatccaatgtaaaataaaaatatt
gtgaATTAAAACagatgagtaagcaaactaGAGTGATTAGAttatttaaa
agcaaaacctttAATGGCTTTGATTTGTATATTTGGAATCTTATTATCCA
ATTGAATGAAACCACTTTACAGAATGTTCCAATCTTTACGTCTTATTTTC
TGCTCAGGTAATTCGCAACCAAGTTCGGACGAATCAAAGGGCTTCTTCAC
GACTTCTGGTGGAACCGTTCTGATCGCTTTGGTGGGAGTTCTGGTGTTGA
CAGTCTGCGCTGTTTTGGTCAAAAAGAATTTCCTCAACGCTGGTGCAAAC
CAAAAGAGTAAAAATGTGGAAGAAGTGGGCGTTGAGAATCCTACGTATGG
CGGGGAAAGCAAATGAATGAATAACCTTGCAATGAATGGCTGAAAgactg
aatgaatgaataaaaaattgtaGTGTTTctggaatgcgggtgaaggaaaa
aagctctcatgcggccgacctg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045979TCONS_00045979Clytia hemisphaericatranscript
TCONS_00045980TCONS_00045980Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00045979-proteinTCONS_00045979-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:159196..168217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14	1.32	0.49	0.42	2.05	0.93	1.15	1.25	1.33	1.08	0.74	2.36	5.42	9.03	9.94	4.42	70.18	12.48	1.96	3.06	313.88	295.79	63.62	82.97	124.42	160.2	0.22	0.58	1.51	1.23