XLOC_042358 (gene) - C. hemisphaerica

Overview
NameXLOC_042358
Unique NameXLOC_042358
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_476:100945..110831-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042358 ID=XLOC_042358|Name=XLOC_042358|organism=Clytia hemisphaerica|type=gene|length=9887bp|location=Sequence derived from alignment at scaffold_476:100945..110831- (Clytia hemisphaerica)
TAGACTGACGAGCGTGCCCAAGAAATTGAAAAGAACGTCACCGATCAAGA
GCAACGATATTTGAAATACATGTGTAGGCAATTTTTTCTATACCTATACA
CATGTTTTTTTATATAAGAACAAACTATGAACCAGGTGTCGTAGAAAAAA
GTCCCCCACTTGGAAATGAAATTTCCTTGAGAAGTAATGTTTTAGCATTC
TGGTCATAACATTTGATTTAGTCAACCAAATTTGATAAATGACACCTCAA
AATTTAAGTTTATTCTTCTTCTTTCCCATGCAAAAAGTTTAATTCTTTAA
CGGTTCATCAAACTCGAGAAATTTAACTTCAAAGCTGTTCAAAGAGGGAG
ACTTCTTTTCTGGGACACCCGGTATAAACACAAGGCTTCAATGCGATTCC
CAAAATATTAAAGAACAAGCTAGTATTAGAGTATTAACTCCGTATTTTAA
GACTGAAGACTTAGGATCTCGAATTCAAAACTTTTGATCTAGTGGGTCTT
TTTGGATGAAATTTGGCTCACAAGATCCTTGTCGTAACTTTCTACCAAAA
AAATCTTTTTAATGACGTCACTTACCACGCCCAAAGTGAGTAAAAGCCGA
AAATAACCTTTGTTCTTATAAATGGCTATTGCTATTGCATTCTAACAAAG
GCTTTAGAAAAAGGTTGCCTGAGTCTAAAATGCTTTTTTATACTAAATAT
TGAATAATTACGGTTGAAACGATATATTTGACATAAAAAATAAATTTGTA
TGGGAAAACTTTACCGTCAGAAATGTCATCATGGTAAAGGCTGGAAAATT
TTTAGGTGTCAAAACTTTGTTTATTTTAAAGCTAAATAAAAGTTAGAAAT
TTCATGCCAAAAGCTCTATTATTTCAGAAGCTATCAACATTAGTTTCACC
CGAACAGAAACAGCCCCCAGTACGAATAGGGTTGGAACCATTGAGTTTCA
AGCCCGAAGGGCGAAACTTTAACCCTTTTCAGGCAAGAGAAATTGAAGCT
ACGTATTTCCCATCCAGAATGCGCTGTAATTATGACAACGGATTGTATCT
AGCGGTTACTTTGTTAGAGGAATACATTTTTTGAAATCTATCGATAGATT
TTAGTTTCAATCCGGTGTTTGTGTAAAAACTACGCGCGGGCGTTCTGGAT
GGGAAATAGGTGGTTTCATTTCCCATCCAGGAGTCTCGCCTCTAGCCCTT
CGGGCTTGAAACTCAGTGGTTGACACCTCTCAAGTCAAAACTCTAAAGAA
ACAAAGTGGAAGTACTGAAATAGTAATCCTCGCCCGTTTCTGAAGAACGT
TCAAATACCCAACATTGTCAGTATAAAACGACGATGATTGATTCGATACA
TTTACATTTTTTAAGCCAACTTGGAAGAGTTGCAGTCAGTGGAAGCAAGA
CAATGCTCGAACCTTGAAACACTACTCGAAGAACTGAAAAATAAATGTGA
AGAAAAACAAGACACGGTGGAAGAAATCAGGTTTTTTACAATTTATTAGT
ACAGTGAAGTCTCCATAAGCCATTACCGAGTTTATGCATGTGTGTTTTTC
CGCGACGGAGACGGTAAGGTTCTTATTTGGCGCGTCGACAGGGTTGTAAG
TTTATATTATGGGCCATATTTCTGAGGAAACGTTTAGTTAGTTCACGTTT
GAATTTGGAAAGATTTAAACTTTTTTCTGAATTGTTATACACCTTTTCGA
CCGTAGCTGCCGATTGCGACGCGGGCATTTTTTGTCTGTTATACCACCCT
GAACTCGATCCAATCCTTTTTTTTACACCTTTTTCTATTGTCTATAGGTG
CAAAAAAAAAAGACTGGGACGGTTTTAGGGCGGTAAAACGGACAAAAAAA
TGCCATCGCGAAAATTGGCGGCTACGGTCAAAAAGTGTATTGGGGGTCAT
CCCTCCCTTCTTTTTAGTGGACACATAACCGGACTAATTGAATTATTCTG
TGTTCTTCTTTAGCTCAGCCTTCATAAAATTCAAATATGACACAGCAAAA
GAATCAATCAGTACAAGAACTGGAAAACCCATCCCAGTCAAAGTTAGTTG
GCACTGTTTTTTTGTTTTTTTTTGCAGTTTTTCTGTTTTTCTGTTTTTAT
TTCTTCAGCTGTAAGGATCGAATCAGATGTTCAAAGCATCCTCAAAAGCC
TTAGCTTTGGCTTGATAACTAAGATATAACATTTTTTTATAAGAAAAGTG
TTTTTTTTTGGAAAACACTAGAAAAGGAATCCTCGATAACTACATAATGT
TGTTTTGATTGTGAGAGAAAATACTAGAATCTGATTGGATGCGATAAAAC
GAGCAACAACGGAAGAGTAGTTTGCAATCAGGCGTTTGTATAAATAGAGT
GAAAACTTGTTGTGCGGTAGTTATACATAACGCCTGACACTCTAGCTAGA
GAAAATCCAGAATCCATACTGTTGAACATTTCCTGGTGCATGTATATTGA
ATCCTACTTTTTCAGGATTTGGAGCAATACCAAATGGCCGAACAGAAAAA
GGAGAACGAAGTCATCGCTGTAAGAATTAAGTTTTTATTTCGTTTATTAA
AGGTTTAATTTTTTAATAAGAGTGGTATCGTTTGCTTACTCATCAATTTT
AATTTACAAGCTTTTTCACATTGAATTGACACGGATGTGAAGCAAGATTG
GTCAGGAAGAGGAAGGAGGCGATCCAAAAAATATCTGCAATCTGATTGGT
TAAAAAGAGTACAATATAGCTTGTATTTTACATGTACAAAATATAAATTG
ACAAAAAGATGTTGTTGCATTGTAGCGGTAGAATCAATCTAACTTTAATT
TGCTACAAAAGTGCCCTGCGCTTTTTTCCAACACAAAAAGTATTTTTTGG
GTCACCGATAAACCAGTTATCAGACATTTGCTTGTACAAAATGGAAATAT
TTCAGTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAATATTGCAC
GGAAAAATCTCGGAACTCGTTAAATATTTCTCATACTGTACTCACAACTT
TCCGATAACTATTACATATCAACACAATATAACAATAGGCAGACACTGTC
CTGATATGAAACATGTGTCTGATTTGAAATGGGAACACTTATGCAAAAAT
AAAACTTTTAACAAAGTATTTTTTTCATATTTTTTAGAACTTTGAAAGTT
TTCATGTGAACAATCGTTTACTACATACAAAATGATTTAATTTGTTGAAA
ACAAAATTCAAATTTGTAACTCTTTTGCTTTGCTGCTATCTTTGTAATAC
TTGTATCCCAATTTGCAAAATACATTTTAAAATACGTTTTTTTTTTAAAG
CAAGTGTATCTAGGCATAGTTCATGCTTATTATATGCTTATGATTCACCC
CCGAGCCAAGTTTTTAATGAAATTTCAGAAATTTTGTAAGAATTTGTTCA
GATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAATGTCTTATTTTTTA
CTTGACCTCTACCAAACCTTTTTTAAACAGATAAAAATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTAGGCTGACATATATGCTCATGTTATGCTTAGG
AATTCTGCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAA
AAAAAACATGTAGTACTTAACCATTAAAAAGTTGATTACTGCAGTGACTT
AGAAAAATATCATATACTAAAAACAAAAATTTCATTGAAATAGGCAGGGA
TTTTTCTAAGCCCTTTGAGCTGGGGGCCGTTTTTGTAAACTTAGATCGAA
TTTCTAATATGCCTGAAAGGGAACTTGCTCAGTAAAGCTGTGCATTGATA
AAACTGGGGGTCTTGTGGGTGTTCAGAGGGCGAAGCTAAAAAAACTCTTG
AATATAATATGTAGATAATAATTATTTTTTTTTGGTCATAAACAACAAAA
AAGGTTAGTTTCGCTAGAAAAAATCTCATTTATTTCGGATTGGGTTTCAA
AAACTCAAAAATTGATTGAGTATTGAAGTATTGAAGATTGAGTATTTTGG
GGCGGTATACGGACATAAAGAAAGTGCTTAGAAAAATCCCTATTACCCTC
GTAATAATATAGTTCACTTAAAATTTGTTGTTACAAGGTTCGTTTGGAGA
ATATCAAATTGAAAAACCGACTGAAGAAACGGGAACAACAGCTCAAAGCT
AAGGTAACGAAAGTTTCATAAAAAACATTACTCTAGTGTGTCCTTTGTAT
TTCTACGAGTCCTTTTGATTTGTCAGGCCGTCAGGCGAAATGGGGTTTCA
ATCAATGGGTTTATGCAAATTACTGTTTTCCTAAATATCTCTGATTGCTT
ATAAAGATTCGGCTAAGTCTGTTAGCAAATAAAAATGGCACAGATGACCC
ATAGCTTAGAATTTGAATAGCGACACCCAATTATACCACCTTATCAGATG
ACGCAAAAGTTTGGCTGGTCAAAAGATCTTAACCATCATAAACAGAGTAC
TGTTGCTTATTTAAACTTTTTATATTCGAATCCCTCGGGGAAACTCCCGT
AAAACGATTTCTATGATTCGAGTCTGTCTATAATTCGAACAAATTAGACT
TCCCGTTCGTGTTCATATTAGCAAGAGTCAATTATACTGTTTTAGGGCAC
AAAAATACCCTCAGAACCCAGAAGAAAATTTTGAGTATAATTCTCAACCA
TACGACTATTGTCCAAAGCAAAATAGAAACTCTCAGAATAAATAAGTATT
ACTGAATTCAGCGGTAAAGGTAGGTAGTATTTTGTAGTCCCCTTAAAAAA
TTATTAGTGACATTGTTTTTTTATATACTATATTACTCTTATGAATATAC
TTCCAGGAAGAACTTGCAGAAGGTTTACACTTGATTGATTTTGAACAATT
GAAAATTGAAAATCAAACATATAATGAGAAGATTGAAGAACGTAATGAGG
TAATACGAACTATCGACCTTTAGACCATGTTCAGACGTTACGGTTTTGTA
TCGCACCGGCATAGTTTTCGTTACGGATTTAACACAGTGTTTCGTAACTT
TTCGTTTTGGAGAGATACGAAACCGTGACGTTCGAACATGGTCTAAAAGC
GTGACGAGGCTGGGTTCGAGTTTACCAGGTGAAGGAATGACCTCAAAATG
CCTGAAGTCATTGCATTGATATTCTCACAGTCAAATATTCACTGTTTCAG
TGGCTTCCAGGCTATATTCTCAGTCTTATTCTAACATTTTTTAGCGTTCC
TGAGATCCTAAGATAATCTAAAGTCTCATGTTAAGACTCAGAGTAAAACA
TTAAAAAATCACTGACGGTTTTGAGGTTACTCCCCGTAAGTGCCAAATAT
TATGGCGGTGATTGTAGCCCTGGTACCGAAATCCCCTTTTCTCAATCTGA
TCTTTCCGATTTTCTGATAGGGAAGGCTTCAGCAACGGGTTTGATCGTCA
GTGAGACATACAGTGGGACAGATTTTTGTTCTCGTTTTCTGATAGGTTTA
GAAATTTCGAAATTATTATTGTGTCACTTCATAACGCTATGAGAGAGAAG
GGATGTGAAGGTGTAATCTGGATTTTTTGCCAACGCAGTACACGTTTTTT
TTTCTTCATAAGAACAAACTTTATGGCCAAAATGTTAAGAACAGGTTAAG
AACATTTCAAGACTTTGTGGACTAATTTCATCGGAAAATGGACAAAAATA
CTCAAAAAACGGCAAAGATAAGAACATATTAAAAACATTTTTAGGCTTGA
AACTCAAAAAGGCTTCAAAAATTTAGGATGTTCTTATAAACGTGCATCAA
GTCCAGTGTTTTTTACTGGTTACGAGTTTAAAAGATTCAACTGACACTTG
ACTGTTATTTTGACCCGCTATTGCCCTGTCCCCTTTGTGGTTTTTGAGTT
GACAGGAATTCATATTTCTTTGTTAGGAATTATTGAAACTTCGGAAGAAG
ATAAATTCAACAGTACAAGTATTGACGCATTTAAAAGAAAAACTCCAACA
TGTTCAGGTTAGAATTGCGCTAGCCTCATTCCTATACGATTATTAAAATC
ATGGTCGAAATATATTGAGAATTGTGTATTTGTGTATTTCAACTTTTCAA
GTGGCTTATTCTTAGCCTTATTGGAACATTCTTTGAGCTTTTTGATCTTG
TAAATCTTAAGTCTCATGTTAGAATTCAGAGTTAAAGCTCTTACTTTCCA
ACCGTACTACACATAAAAATCATTTCCGGTTTTAAAATTTTTTTTTGACT
TAATTCCCCTCATGTGAAAATATGTCTGTTTATGTTTTATATCCAGGGAG
AAAACGGTGAACAACGAACAAATTTACGTGATATTGAAGTCACTGTAGCT
CATGTAAGTACGAAAGTCTTTCTGTCTGTCTCTCTATCTATTTCTCTGAC
CATGTTTTTCACAGCTTCAAAAATTTTAAGGTCTTCGACCGCTAAATCGT
AAAAATATGTAAAATCAGATCTGCGTCCGCTAACAGAAAAAAAATATTTG
TGCGGGCCCCCTTGAAACAGATAGGCATACAAATCCACTCCCAATTTACT
CTGTCTAATGAGATCTCTGGCTCGTGAGCTGGGCAGTAGAGAAGGGAGTA
TGACAAAGTAAGTAATTTTGAGACCGCAGTCGAGGGCAACCCGAAGGCTC
CCCTTCCTTTAACTGTCTACCCAAAGGTAGGGGAGGGCGCCACATGAGCA
CTTTTGGAAGTCATAGGTATTACTCGAGTTTGGAGTTCGTACCCACAACC
TTGCGCACCGTAGCTAGATGCTACCTTCGTGCTATGGCCGCTTAGGAAAA
AGCATAGCAAAAAGCAGGTAATTGAATAATGGATCCCTGGTTTGTGACCT
TCCTCGAACGTTTTAGACCATTTTTAGACGTTAGTGTTTCTTATCGCTTC
AGCATGATATTTGTTGTGAATAGGAACAGTTCCTACTGATTTTGGAACGT
TTCGGAGCAAGAAAACGGAACAGTTCCGTTCCTATGAAAATAGTGGAGCG
AAACCGTTTCGATCCATTTTGCTTTGTGACGTCTCGAATTTTGACGCTCA
CACAGTGTTTCGGAACCGTTTTGTTTCGCAGCGATACAAAACCGTAACTG
AATATTGCCTTAATCAATTTTCATTTTCTTTTTTCCAGAAACGTGACCTG
TTGACACGCTTGAAACAAGCACGTGACTCCCTTCGCTTTGATAACACCAA
GTTGAAGCATAAAGCTGGTCTCCTTGGAAACAAACCGTTGCTAAGGGATT
TCGAGGAACGAAAAGATGAGGTATGCCCACGTTTTTAAAGTTTTTTCAAC
AATCACACTTTAACCTTTTTTAATTTATACAGTTGGAGTCTCTATAATTC
GTACGCATAGGAGGAACCCAACATTTGTTCGAGTTAAGGAAATTTTGAGT
TATGGAGTAAGGTTTACGATGAATTTGAAGGGACCAGAAAACTTACTTAT
TACTTATTTGAGATACAAATATGATGGTCCTATGGTTATTATTCAATTCG
TACTTACCTGGGACCAAATCTTCGTACGGGCTTTTGATTTGTTGGTGTGT
ACGCCTATCAACCCTTAGGGACGCGATCGGCTTCTTATTAGGGGACTATG
AATTTACAAGGAACAATTGTTCTCAGGCATTTTTAGGCTTACAACTAAAT
CAAAGCAAGCAAATTCCCGCCAAAGCTCTAGAGGCATTTTTCCAAGTCTC
TGCGGTAGAGTGAAATCTATTTTTAGCACTTGGATAACTTGAACTATATT
GACGTTACTTTTTCACTGGGTATCTTAGATTTTTCTTAACCCTTAGACTA
CGAGGGACGCGTATATGCGTCCAAAACAAGCCAAAATACTCATAGCTGCT
GACCACCTGATTTAAAGGGGTATAAACCGAATGCTTTTAGAAAGAATATA
AAAATAGCTTTCCAATGGTACCAAAACCATCTACAAAATCAAAAGTTACA
ACCTTTTATGGCACTCTAAAGTTTCGAGTTTCAAAACGAAAGTTTAAAAA
AATTTCAACTTTTTCAAAAAAAACAGCGCGCACAAAGGGTTAAGAGCGCT
ACACTTGTGTTTACGATACCTTCATCGAGAAGAATTTTCCTTGCACTTTC
GTTAGCAGTTTCTTCAAAAGCAGTAAGGGTTCATAGGTGTAGTGAATAGC
TTGTTATCACTTTCTTTTTCAGAGTGAGGAATTGAGGAACCGGCTGGCAA
ATTTGAGACAGAATCACATGGAGTTGAACATTAACTTGACCACTATCAGA
AAGAAAATTGATAATGTCAAAACTATTGATATGCAGTAGCAATAATTATT
ATCAATTTTTTGTTGTCTTGAGTGTTGTTTCAACATTCATTGGTTTATTT
AACGTTAAACGAACGTTGTGGACGTTAGATTGACGTTGTTCGGGCGTCCT
CAGACACTAATTTTGAAGTTGGACACAATGCTGGACAAAAGGTTTGTAGA
CTTCTGCAATATTTGCAAAATACTTCAATATCGATCAAAAACAAGTCCCC
AAGAGGCTCTGGGTGCTTTCCAAACCTATTCAAAGTCATTCAAAGTCACC
CGCTGCAGTCTAACCGCAAGGGCAAACCACAAGGGCTTGACTAACTGGCT
TACACCAGTATCAAAACGCTGATTTTTTGCTTGTGGTTCCCTCAAAAGCA
ATTCAAAAGCAATGCAACGACTTCAAAAGTGTTTTTCTTAACTTCCATCC
CCTTTCAGACACAATGAAGAGTCATTTTGCTCTATTTCTCATCATTTTTT
ACTGAAATTCCATTTGTCTACAACCTTTTGTCCGGCATTGCATCATATCT
TTTCTTGTTGACAGAAATGTTTTATGAAACTATCCTGCAACGTCCGAACA
AAGTCGATCTAACGTCCACAACGTTCGTTTGACGTTAAATGAACGAAAAC
TTTGCCTTTTATGACAGTGGGTTTGAGATCCTAGGAAGTCTCTGTCGATA
GCTAACATGCTACAATTTTATTATTTATTGTCAAATTTCAATTCAAATTG
CCTTTTCGAGATTGAGTTTTGCAAGGAAAGTAATGGGGTCTGTAAAATAT
CGGATATCTTAATCTACCCCTTTTTTCACTGTTCAAACCATAGATTTATA
AAGCCCGATAGGCTAGATGGCGTACCTTTGCTGAAAAGTGTGCCGTGGCT
AGATAAGAAATCCTATCTAAGTCACGTGGCATTACAATAGAATTTCAACG
CTTGACCAATAAGAAGCTTTGCGGGTTTTCGAAAACATTTTTTCCGATAT
TCACTTTTTTTGCCTGCGATGGCTTTAGGCACGACATCTAGCTCTTCGGG
CTTTACAAATCTATGGTTTAAACCCGTATACAACATTTATATTATTAAAA
TCAACAGGGTAACATTATCAAAAGGAAACCGCGACAGAAAAATACACAAA
TTATAATTCATTTAACTGATAGTTCATGTGAATGCCCCCTAAAGGTAAAA
CTGGGTAAAAAGCATGAATTGAGATTTTTCATAGTATTGAATAATTAATA
TCATTTCAAAAAGTGGGTTTGCAGGAAACCTAGAAACAAACTTATTTTCA
AAATAAGTTTACAGTTTTTTAATTCATCCAAATGTATATTGAATATATTT
CTTTAATTTGTCAATAATATAAAAAAGTGTAAAAATAGATATTCTGATTT
TTATTTTTAAAACTTCAAAATAATAATAATCTTTTCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067826TCONS_00067826Clytia hemisphaericatranscript
TCONS_00067825TCONS_00067825Clytia hemisphaericatranscript
TCONS_00067824TCONS_00067824Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067825-proteinTCONS_00067825-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:100945..110831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.82	8.84	5.8	5.04	46.03	32.56	25.15	29.04	20.53	22.3	18.35	17.88	3.7	3.71	4.4	3.97	6.91	7.47	5	6.59	7.77	8.03	7.36	7.66	57.47	41.39	8.88	8.46	5.74	4.65