XLOC_044483 (gene) - C. hemisphaerica

Overview
NameXLOC_044483
Unique NameXLOC_044483
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_62:390043..402149+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044483 ID=XLOC_044483|Name=XLOC_044483|organism=Clytia hemisphaerica|type=gene|length=12107bp|location=Sequence derived from alignment at scaffold_62:390043..402149+ (Clytia hemisphaerica)
aaattatgcAGTAATAATATCAAACAAGGAAAATATTATCAAGTATGGAG
TTTCCTAAAAAACGAAATGGTTCAAAGATCAAATCAAAATGGATTGGttt
aaggaaaagaaaaacaaaaattgcagGACCACCTAAAATTACtaacttta
aaatttcaaatgttcCAGTTACTAATGATGATAATGGTTACGACTGTGAT
gtggaaaattttgatgaacATGATGTTGGAACTTATGATGAAGACTTTGT
ACCTAAAAAACAATGTTATGGTATTAACAAGGAGAAAGAATTAATTTGTT
GGGACAAACATAACATTGATTATTGCTTGATTTATGCAATGAAATTTAAC
ACTTTCCCGAGCCATTGCTGCTTTTGTAACGATGAAGTTATCACATCTTT
TGTATGGTGTAAATCATGCGGACCATTGTCCTTTTATTGTCATGATTGCG
CttataaaattcacaaaaacacACTCTTTCATTCATTGGTTGAAGTCCag
gtttgtttgttttcttcTGGTCTGTCTATAATAGGCACCCTATTGGAATT
TCATTGtggttgatatttttcaaattcgaaaGTGGGGGCTGGGTTGATGA
CAAGTTTCATATAGAGGTTTCCCTATGTGAGTGGGATGCCTTTGNGGGCT
GGGTTGATGACAAGTTTCATATAGAGGTTTCCCTATGTGAGTGAGATGAC
TTTTTCCAGATGGAGGTCAGAGAGTTTATTGTTGATTTCAAAGTTGAGGG
AGTTAAGGTTGAGGAATATTCTCgaatatttattaaaaagaacaaaaggT
CTGCTCATACTTCTGAAGAAATTTACAAAGTTAAGTGTTTAGATctcttt
tgaaaacatttttgtctCAAGTTTAGGCTTGGATATGTCCTCAAGATGTA
TTTTAAATGATTACAGGTTGATGGATGCAATGTCAAACCATTCAAAGTAA
AATCTGTTCTGCAAACTGATCATGTAAAAGCATGTACTTCTTCTTATTCA
AGAACATTGACTGTGATTTCAGAAACAGGTGAATTTTATTTAGTTTGGCG
TATACTTGTTGCAAAGTAATGACTGCCAGTACATTCTTAAATACACTCTC
CTTGGCTCAATCTAGGCTGCAAATAAGCATTGTTAGTCTTCAGTTGCAAA
AAATGGTGGAATGACTGAAAGTCCTTTTGTGCACGTcagtttttaatgct
ttattCATATAGGGAGTTTCGGACTGCGTTTAATAAAAATTCATAACAAA
CAGACTTGTACTTTTTATTTGCAACCCTTGCCCGATTATTACAAATTTGG
ATTATAGTATAATCATTAGTATAATTAGTATAATATTGTAGTTCTTTTTA
TTTCATGAGTATCGACAGGCAACTGtttgaatattattattatggacttt
ttggttatttttattCGAATAAAACATATATAGAGAGTATTTTTAATTAC
TTATATTTACCTTAGGATCAACTCATCaatgtcaaatttatttttgtaaa
tgcacAGAAGAGTTCAATACTTTGGTACATCTGGATCTATGGGCAGTAAC
ACCGATAAAGCCAAATACAgttatttcaatgaatttgttACACCTTTTTG
TTGCATTACAGTTGGAAGGGAAAATATCTTTTTCGTCTTTTTGTGATGGT
TTCTCTTGGAAAAGCGGAGTGGTTGATCATGACCTGGTAAGATACTATAT
GggtgaagaaatttctaaaatttttgtccaactatcttctacCAGGGGAT
TGGGTGGCAGAGCAACATATGTAATGCATGCATTTTGTTCTTATTAGGAC
TCTAGTACTGTATATATTCTCATTTCATAAGAAACATTATAATACCCAAC
TTCAAAATTgagatttattgaaaaatattgattagAGATCTATTTTTAAG
gtcactttttgttttgaaccaATGAAGCAAAAGCTGTCCTTCCCAGGCAA
AACAAATTGACATCTTAACTattttcaatctggcgtttgtacAAAAACCA
GGCAAGCCGTGCAACTTTGATGTAATTTAACTCGTTTCAAATTCTACCAT
ACATATTCCACTCTAGCCCCTGGCTATACCTCATTTGCTTGAACGGagca
aacacaaaaaaatctacACAATTCTATAATCCAAAAAAAATGTTACAAGC
AAAAACCGCACAGTAAATTCTCTTGATGTTGATCCTGATCTCtacttttc
ccttttttctatatcaagtattttgagaaaaaacaatCAACAATCAGCAT
TTCAAAAGGCATCTCCACTGTGATAATTTTTAGTCGTTCAGTTAGGagag
aaatatattttgaaaaaaacgtaCTTTTTAGAAGAGATACCTGAACCGCA
TGACCCAAACGGATTCATTAGATCAATTCAGACATTTCCGTCGACAATTA
ACAAGTCTGAAGACAATATGCCCGAACTATGATGGTTTGGAAAAGTGTGC
ATCTTGCCCCAAGGTATTAAAAAATTTAagtctttactttttttaaacat
aaacaAGCTACCGTATGTCCATTTTGATCAAGTGATTCCCTATCCTcagt
aatttttgaatttttatgtaaCTTTGCTTGTCTCAAAAGATTGTGGTGTC
AAACAAAACATTGGGGACTGTTTGTAAACTGCTGTAAGATATTTATTTTG
CATCGTAGAATATGAAATTACACatataaatcaaaatatttttaaattgg
aCAATTTGATTCTTTTAAGGAGAATGGAAGTATTTTCTACTGCTTTGACG
CCAACTTTGGACTTGTGTTAAAAAGCTCTGCTTCTAAATCAAAGAGACTC
GCTATGCGGTCGGAAAATCTATTTATCCTTGATGAGGAAGTAAAAACCTT
TATGGAAAGCTACGATGATACTTTGAAGACAAAGGTACAGGATTTAATTA
CGTTGTGAACTTTTATTAaaagattaaaatatttttcaagtccGTTAAAG
GCTTTTTATTGACAATCAATGTTTTGAAATAATAAACTAACTCCAAATTG
CTACACAGTGTTTCATGCTATGCAGTCGTCAGATAATTCGTTTGTGGTTG
TTTTTTGCAACCATTCAGACATTCTTCAGCACTGTGTgactctatttttc
ttttttacttaatGTATCAacaaatagaaaatttcaaggtaaatttttca
ttcaaacgaATATAAACTTGAGCCTAAAGGCGTGTGTTTTCATTCAGTTG
TTCTGATTGTTGATAAAATAGACGATTAATAATAACATCTtaagaaattg
attttgtaaTGATTTGTAGAATGAAATTTTGGGAATCTGCTCAAAATTTG
CGAATTTGTGAAATTCTATTTTAATaaagtaattttttcaattggCTTAG
GATTGCAGCAATTTCCAAGCTGGCAACAATTTACGGTCAAAACGAAAAAC
GAAGAAACTCAGTGTAACTGGAGTATTTGGTAcattaagtggattaattt
tcacgtGGACTTTTTTTTGCGAATTAGGCTCTTTTTTacctgattttttt
catttagctgatgattttaaattttttcatagaggactaattttggcaaa
gatggctgaaattcgcgaaaatcgcaaaaattaatccacgtgaaatttaa
tccacttaaggtatgtcTTGTCGTCATGAGTTCCCGAAGCTTTTCTTGAA
TATGCAACACGGTGAAAGGTAATGATTCAGAATTGCAGTAATGCATAAAC
GAGCAGtttttattctcaacttcaagCGTGCTAGAATCATAGAACAGTGA
ATACCTAGGGTACTTTAGTTTTTTGGCCTTGGAACAGTTTTTCCGTCGAA
ACAAAGATGACAGCATTAAGATAAATTTTTTGTtagaaatcttaaatttt
ttccATCTTAGCAGTAGAGAACAGCTAGCCGATATCTagtttgaaattag
aaaatGGGTCCAATATAACACGGAAACACTTCTTATAATACATAATCTTC
AAGTTTACAATTTGTCAAGCTTTTAAANTTCTATCTTAGCAATAGAGAAC
AGCTAGCCGATATCTagtttgaaattagaaaatGGGTCCAATATAACACG
GAAACACTTCTTATAATACATAATCTTCAAGTTTACAATTTGTCAAGCTT
TTAAAACCAGAATTTGAGACGGATAGAACTCCAGTGGTTGTGTAACACAA
GGAGTGttgataagatttttttattgttatatCATCATCAGAAATAGTAG
TTGAATTGTTGTTTTAGATTGGGCTACGCCGTTCTTCTCCTTGATCAGAT
ACTGAACGATACAGAAAAAAAGAGGTTGGATGTGCACATCATATATGATA
TTGCATGCGTTTTGAAGTCACATTTGTAGGTAGAAAAttaggaaaacttt
tttttctaattaTCATACctcatttaaaatttcttttttcaaaagagtGC
AAATAACTCTATATAATAACTCTCTAAGACTTTTTGTTTTATGTAAATCA
CTNGGTATCCAAGGTAATTTAACGATTGGTAGTTGCTCTGGATCATTTCG
ATTGTCGGTTGTCTGGTTCCTGGTTCTGTCGTAATCGTTTGCGAAACGGG
TTAAAGTGTTACGATCATAACCGTTCTCGACAAAGTTATTTATTaagaaa
tcaattttcttcCTGACGGAATCGGTCATCACAAATTCTGTACGCACGAT
TAAGAAATCCTGAGAATATACTCTTCAACACCTTTGGGTCATGAGCTGAA
TTAGGTTTAACTTGCACGTTAGTGAtcgcatttttacatttttaccaagc
aggtcgaaatattgtttacacgaaaaatatatacagaatgaccattaaaa
tgttatttaaattATAATCTACATTCGTATCAAAGTATGACACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTATCTTAGCAA
TAGAGAACAGCTAGCCGATATCTagtttgaaattagaaaatGGGTCCAAT
ATAACACGGAAACACTTCTTATAATACATAATCTTCAAGTTTACAATTTG
TCAAGCTTTTAAAACCAGAATTTGAGACGGATAGAACTCCAGTGGTTGTG
TAACACAAGGAGTGttgataagatttttttattgttttatcatcatcaga
AATAGTAGTTGCATTGTTGTTTTAGATTGGGCTACGCCGTTCTTCTCCTT
GATCAGATACTGAACGATACAGAAAAAAAGAGGTTGGATGTGCACATCAT
ATATGATATTGCATGCGTTTTGAAGTCACATTTGCAGGTAGAAAAttagg
aaaacttttttttctaatgATCATACctcatttaaaatttcttttttcaa
aagagtGCAAATAACTCTATATAATAACTCTCTAAGACTTTTTGTTTTAT
GTAAATCACTGTAACATTTCTTTGTAGATATTGACTTAGATCACCGACCT
ACCTCTCCCATCTAATTTTAGCCTATTACACGTAAGACTGtatgttaata
ttttttacGTTATCTTTAGAAAAAGAATACTTTTACCAAGTAtcaagatt
tcaaatttggcatcCCTGTTTTTCATTCGTATGGTCACAGAGGAGACTGT
CAGGTGATTATTGAATTCTATGATGGTTTTTCTGctttcagaattttgaa
aattttgcgatTTCCGCGAATTTTGAAcagattcgcgaaaatttattcTC
GCAAAAACACTTTTCAATAAAGTCTACGCTCGACCATAAATTCTCCAACA
GCTTGGAATGTAATTTTGGGATACCTTTTGTGTTGAtggttttgaaaaat
ctcagGCTTCAACGCTCTATCTtacaaaaaatagtgaaaatcacaaataa
aaacaaaagtcgacaaattttcttttctcgcttcatttttttgaaagtta
atttgttatttttaggTGAAAAATTCAATCAGAAGATTAGATTCTTTTGG
CCTTATGGATGGTGAATTGATGGAACGCCTCTGGTCATATCTTCGATCAT
TCTCAAAGATTACCAAGGAGATGACTCCAGCTCACCGCACGGATTTACTT
AGTGATGCTCTGCTGCATTTTGGCTCAAAGAAAATGGGAAATATCGGTAT
GATTACTTTGAAAAGTTCTATACTAGTGTTACATAATTATGATATTTTTA
AGCTGATTAATCACTTGGTGTCATCTATTAAAGCTTTGTTTATCACTGGT
AACGCGAAACATTTTTAAATCTTTACTTAGGctttacttttattttcttt
taggaAAATATCTCGTGTTTCTATTTCAAAAAGCAACAAGAACTTTGAAT
TCTTGCGATTCAGAAATTAAAACGATTTGCTCTAAACTGCCTGGTAAgtt
ataattttttgatttagaATAACTTATTCTAGTAAGCATGAAGCTTAGCG
AATTGAGGTCTGCTTGAATAAGTTCTCGTCAAAATCTATATTAGTTCAAT
TCTTAAAACAAGCTCTCGCTAAAAGTCATTTCGATATTGGTTTCGGTTGG
TTCTAAAATTcttctttagaaaaacattgtaaatttagaagaatttaaaa
gaaaacagTTCAAAAAGGCCAGTCAAATTTTAACACTTTTTCAACACTAT
TCTAGTTAATTTGAAAATTCTATCATGACTGATTCATGATACCTTTTATA
AAATTCCTAAAAGAATTGTTCAAAACATTTAGCTCATGTGGATGAAGAAA
TTATCAAATCATGGAAAAAAGAGGAGGATAACGCCGTAAGCCAAAATGGA
AAACTTATACAGAAAAGTTAGTATTTTGCAACGTCATCTTTTTCTCGTTA
CTGGAATGACTAAGTAGAAATCTGTCGAACCAATAAGGTATAAGCCCCGA
AGGGGCCAGAGTGGAATCTGGTGGTAGGATTTGAAGCCAGTTAAATCCTA
CCAAATTATTTTTTTGCCGATCCCCCATATTGAATTCCTGTACTGAAAAA
ACTTGGGTCAACCGCTAAATTAATTTTTTGGCAAAATTTCTTCCTTTAAG
GTTGAGTTATGGGGACTTAAATGTATTTAAAAATATTTCGATTTTTGTAC
GTGCTGGAGTGCTTCAAAAATGAAGAATAACTCTTTTTTATTATTCTTTA
GAAAAACTGACCCATTTGATTGACATGACAATTGACATGACAAACGACAA
ATGTCTGTAAGTAACAACGACTACGGACAACAAGATAATGACTGTACTCT
GCTGACGACTTACATTTCTGAATATATATTGAGGTGTTGAGGATTTCTTT
TTTTTTACCGCAGTAGCCATAAATTTATTTGAGACGTACGATACTTGAAC
ACAAAGACTACTGACTCATAAGACAACTAACAACTTGTAAATTTGTTTTC
CTGTTCTTTTGACCAACTTTTCACTAGCATTGTGGAGTTAATATAGTTTT
GAATGAGTAATTACTGCTTTGTGTATATTTTCAGCTCCTTCTGATTGGAA
GCAAGTCTACTACCTTAAACTGAAAGACTTTTACAAAGAATCTGCACTGG
TTTTAATGAGCGAAAAAGTATGCGATGCTGCATCGCATCAACGAAAGGCA
AACAGGTAAAACTTGCTTAAATAACGAAGAATATGTTTACCCGTTGGTCT
TTACCCCGCTGAAAGCTGAAAAAAGAAAATGATTGGAAGGCAAGCCAACG
AAATGTGTTGAGCTTTACTCTTTCAGACTTGAATTCAGTTTCAAACTTTA
AGGGGATAATCAGATGATTTTCGATATTTGGCCTACAGATTCAAGCAATG
GCTCTGAGAGAAACCTCCAAATTTTTTGGCCCAGTTATTTTCCAAAGCTG
ATATAAGGGGCTAGGACTGTCATCACGAGTATACTGTTTTAGCCTAATCT
CAGAGTGAGAGTCCTACTATTTCGGCTATTTTCAAAGCGCAATATCTCAG
CTTAGGAAAATGATTGGGTCAAAAAATGGGCCATGGAGTGAGCCTATTGG
CCAAATATAAAAAATCATGTGATTATCCCTTTAACATTACATAGATTTCT
CGAAATAAAAGAAATTATTTTCCGAGATTTTTCGATCCAATTGAGTGTAA
TTATGTTGTTATTTCATTCATTAGACTGAAACGAAACTTGACATCGTTTG
AAAAGCTTCATAAAGTGAATACGAGATGGAAAACAACAGATCGCGACTTT
CGAAGTCAACATATGACATTTTTGCGTGTGAAGTCAAACGAAACAGCATC
CACACTATATAGCAGATGTTCTGAAAGAATGATGCTCTTAACATTAAAGA
AGCGATATGCAGGTATGTTCGATTCTGAAAACACATTTTCATCAATTTAC
GCCGGCTACAGATCAGATTAGTAGATTTTACTTGTAGGCCCCACCATGGT
TGTGCTACACAGGGAAAACTTTTGAAATTCGGTCACTTATAATGGCCTGG
AGATATTCGGTTTCAATTTCAACTAAACACCTAACGTATTTTATCCTGTG
CCCCTTTAAAAGTAGATTTATTAATAAATCTAAATATAATAGAATTCCAG
AACTTTCAGACAAATTATCGAAATCCAATCTCAAAAAAAAAATTGTAAAA
GGTAAACTCTGACTTCAAAGCAGAGAAGGTTAGAAATAATGGCTGCTCAA
ACGATCTATCAATCAATAAGAGGAAATAATATCAGCAACAAAAAGGACTC
AAAATTTCTTAAGATATTCAGAAATATCCTCTACGAAAACTTTTTAGTAA
ATCCATCTCCCTAAAAAAATCCAAGAATAAAAAATCCAAGTAGAAATTTT
TATTCCTTACGCTTCTAATTTTCTCTCACTTCAGATGGTTCGGCGATCGC
GACGAGATTGAGCAAACAGATAAATAAAGTATGTAAAGAAATCAAGAACC
TGCTTGCCTCATACAATTCAATGAGATTGGAAATGTCACCAAATTTCAAA
ACTATAGATTACAAAGATGCCCTCAACACAGAGGCTCCAATATATAATGA
AGTGAACTTTGTATCCAACGTCAATGAGGTTGGTGATATTATATTCCCAA
GAAATTTCTTTTTTTAATGTTTTTGGTTTTATGATGCGAAGGGTGCAGTG
ACAAAATTAACCGGAAAAAGAAAATTGTTTCACGAAATAGACATCGAGTT
TTTATTACCTATGAACTCATGCATTGGAAGAAAGGATATGACTCAATTTT
CTGTAAACACGCTAAAGCAAAAGAGAATTGAAAATGTTTATGTGTCTTGT
AGAGTGCAACCAACGATTTATTGCGCTCCAAGTAGAAGCGCCAATTAGGG
GTAGCTCATTGGGTAATTGAAGTTGTATTAAAGTAATAATTGTTTCtact
ctctttctctctctttcTTAGGTAAGAAGCTCGTCAATCCCTACGAATGT
TGTGAAAACATTGGTTCAATTCTATTTGAGAAAACAAAGAGCACAGGAGG
AGATCGTTATAGTTCAAGAAGAAATGAAAGCAACGTTGTCCTATTGGAGA
GACCAGTTAAATTTTCTTGTTGAATGTGCTTCGCAGCAAACGTCCTTTGG
GTTGAAATATTTACTTCAAGAAAGAATATTCATTGTTAACAGCTTGACAA
AGGAATTAGAACAATTATTTAATTCTGTTACGAACATTGAGCTTCAGACA
GAATATGTTAATCGTAACTTGGATGTTTGTATCGATGAAATGGACGGTAT
TTACAGTGACAGTGATTGTTCAAGTGAGGACGAAGAAGATTTATGTTCGA
GTGGGAGCGACATTGAGGATTCAGATTTTAATGGTTTATACATTTAGGCT
TGATATTGCAACTTATGTNGGACGAAGAAGATTTATGTTCGAGTGGGAGC
GACATTGAGGATTCAGATTTTAATGGTTTATACATTTAGGCTTGATATTG
CAACTTATGTCCAtgtaaaaagttgtttttaatcCTTAACATTTTTATAG
ATTCATTAACCAAGGGTATCATCTAGAATTAGTCCGTtagattttaaagt
tttagcctcctaattgacaaaaaaattaggttttcttTCAAGCTTAGCTT
GTAATGTCGGAACTCTGGAACTTAATACTTTTTATTTCCTTTCGAATAAA
AGCCCGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071591TCONS_00071591Clytia hemisphaericatranscript
TCONS_00071592TCONS_00071592Clytia hemisphaericatranscript
TCONS_00071593TCONS_00071593Clytia hemisphaericatranscript
TCONS_00071594TCONS_00071594Clytia hemisphaericatranscript
TCONS_00071595TCONS_00071595Clytia hemisphaericatranscript
TCONS_00071596TCONS_00071596Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:390043..402149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48	0.71	0.22	0.09	14.75	15.01	15.56	20.13	13.6	16.26	10.11	9.99	6.28	5.91	2.58	2.7	2.96	3.92	1.02	2.16	3.23	3.33	1.26	4.87	6.35	9.57	1.29	0.79	7.92	5.07