TCONS_00005295-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005295-protein
Unique NameTCONS_00005295-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005295-protein ID=TCONS_00005295-protein|Name=TCONS_00005295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
MESPNYQFTKKSNDFDSEATETDVEENSGNVSDKKDSEKLLSNEDDEQEE
EIVDSDFEKEERLFSPVKQKTPVKKEGDVTMERTQEYNSDGEEIYCVCRS
ADIDRFMIACDKCGEWFHGDCIGLKKKHAKKIKDWFCNGCKKLDPNLQTI
YKEKKEKKIKVERMDSTDSRKDQKDKEHKDKEQKRISRSCGECSACLIKE
DCSTCDYCKDMRKYGGPGKLRQKCRLRQCHNLSKILKGSQTAGNKKKSSK
SKDSRDSRQGSDKEESKSTGNSNNITTDHSYTMPASSFYIPTLTKPSSSM
KRPRESESDYQPSDHAQDEGDGDSPNDDTDYEPEQKKKKMLKVKRANVKK
NTSQRNKESKTTKKSSNNRKKKSNTSRGTKNDDAKLATKLQKMEYLASRS
TRSNKKDPSSTNRKEKEKEVYTPKHCLGPGCVNAAKLNSKYCSNECGVQL
QIRRLQVILPTRGINCSKIYNATVLAEEKIQKYKRTQQECQEILLALDKE
YKQLDELIQKSKGLTIKEENQNEEDKDGDIDLTTYCVSCGIPRIAFRHME
KCWAKLECLMSFGAIQKSAGNLFCDTFMVQQGTYCKRLKIMCPEHYKEGK
IEANEVCGCPLVDDQQKETNKFCRQARKKCIRHVAWQRLRKGEIDLKRVH
QWWKLEEAYEQERQQQIEISNRRNVLAVLLNDTFDHNYNRSPEKVSLSSN
AQTFDHNYGRPLAEKSDSPSKDIKIKEEDEEDSNINITGDTKSKGASEAV
KNETPEPMEINVKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003018XLOC_003018Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005295TCONS_00005295Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR022056CpG-bd_C
IPR002857Znf_CXXC
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 504..524
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..420
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 691..764
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..181
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 95..141
e-value: 6.6E-10
score: 48.9
IPR022056CpG binding protein, C-terminalPFAMPF12269zf-CpG_bind_Ccoord: 453..679
e-value: 3.4E-65
score: 220.0
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 185..229
e-value: 2.7E-13
score: 49.6
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 181..230
score: 13.448
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 84..158
e-value: 2.4E-16
score: 58.6
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 95..142
e-value: 7.5E-12
score: 44.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 93..143
score: 9.41
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 96..140
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 84..149

Blast
[Close]
BLAST of TCONS_00005295-protein vs. Swiss-Prot (Human)
Match: CXXC1 (CXXC-type zinc finger protein 1 OS=Homo sapiens GN=CXXC1 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.452e-69
Identity = 121/311 (38.91%), Postives = 189/311 (60.77%), Query Frame = 0 
Query:  402 RSNKKDPSSTNRKEKEKEVYTPKHCLGPGCVNAAKLNSKYCSNECGVQLQIRRLQVILPTRGINCSKIYNATVLAEEK----IQKYKRTQQECQEILLALDKEYKQLDELIQKSKGLTIKEENQNEEDKDGDIDLTTYCVSCGIP---RIAFRHMEKCWAKLECLMSFGAIQKS----AGNLFCDTFMVQQGTYCKRLKIMCPEHYKEGKIEANEVCGCPLVDDQQKETNKFCRQARKKCIRHVAWQRLRKGEIDLKRVHQWWKLEEAYEQERQQQIEISNRRNVLAVLLNDTFDHNYNRSPEKVSLSSNA 701
            R++ KDP+S               CLGPGCV  A+ +SKYCS++CG++L   R+  ILP R     +   +  +AEE     +++ +R QQ  +  L  +++ + +L+ +I ++K   ++E+ ++ E    D DL  +CVSCG P   R+A RHME+C+AK E   SFG++  +    A  LFCD +  Q  TYCKRL+++CPEH ++ K+ A+EVCGCPLV D  + T  FCR  +++C RH  W++LR+ E+DL+RV  W+KL+E +EQER  +  ++NR  +LA++L+ T  H+    P    L S+A
Sbjct:  363 RADAKDPASL------------PQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQR---IQQWQQSPCIAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGDSDDTDLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHD----PLTTDLRSSA 654

HSP 2 Score: 142.124 bits (357), Expect = 3.890e-35
Identity = 72/188 (38.30%), Postives = 97/188 (51.60%), Query Frame = 0 
Query:   88 NSDGEEIYCVCRSADIDRFMIACDKCGEWFHGDCIGLKKKHAKKIKDWFCNGCKKLDPNLQTIYKEKKEKKIKVERMDSTDSRKDQKDKE-----------------------------HKDKEQ-----------------KRISRSCGECSACLIKEDCSTCDYCKDMRKYGGPGKLRQKCRLRQC 229
            N +   IYC+CR  DI+ FMI CD C EWFHGDCI + +K AK I++W+C  C++ DP L+  Y+ KK ++      DS++ R +   ++                             HK   Q                 KR +R CGEC AC   EDC  CD+C+DM+K+GGP K+RQKCRLRQC
Sbjct:   21 NGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQRRAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00005295-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CXXC11.452e-6938.91CXXC-type zinc finger protein 1 OS=Homo sapiens GN... [more]
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