TCONS_00005354-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005354-protein
Unique NameTCONS_00005354-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005354-protein ID=TCONS_00005354-protein|Name=TCONS_00005354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=879bp
MNILRKDKKDEESGIFNPFQGIDKSTVLQESRVFHDTPINTRKCIHILSK
VLYLINQGTHIGTTEATETFFAMTKLFQSKDVTLRRMCYLAIKELANIAE
DVIIVTSSLTKDMTGKDEGFRAPAIRALCRITDSQMLAGIERYLKQAIVD
KNPSVASAALVSSLHLLKPNFDVVKRWVNEAQEAVSSDNVMVQYHGLGLL
YHIKQNDRLAVSKLITKQARQSLRSPYAYCLLVRIAAKYIDEDPENPENT
PLSEFLESCLRHKSELVIYEAARALVNLKSVKSKDLDPAVSVLQLFLSSP
RPTLRFAAVRTLNKVAIMQPQSVMVCNLDLENLITDVNRSIATLAITTLL
KIGNENSIDRLMKQISTFMSEISDEFKIVVVEAIRSLCLKFPRKHSVMMN
FLSSMLREEGGFGYKKAIVDAVVTIIEDNNDAKESGLAHLCEFIEDCEHT
TLATKILHLLGQEGPRTSTPSKYIRFIYNRVILENAEVRAAAVTSLAKFG
AHCDALLPSILVLLSRCMMDTDDEVRDRATFYYHVLRKEDKQLASSYILN
TLSVSIVGLERALAAYLKEPTDKPFDMKTVPIATVPMHDQKAVKTSGEST
GVAQKASTTSVTTRQDVYAEQLAAVPEIAALGPLFKSTSKPIQLTESETE
YVVSCIKHTFADHMVFQFNCTNTLNDQILENVTVQMETGDEAEVVNYIPC
HVLKYGTPSTTYTIVQYPEDAATVSASFTCTLKFIVKDCDPGTGEPDDDE
GYDDEYVLEDVEMVVADHVQGVVRTNFLASWDEIDDENEMEETFALSSMS
SLEEAVTKITQFIGLQPCERSDRVPEGKSSHTLLLAGVYRGGIDVMVRSR
LALKDGVTMHLTVRSQDPIVSEVVMSAVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003041XLOC_003041Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005354TCONS_00005354Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013040Coatomer_gsu_app_Ig-like-sub
IPR011989ARM-like
IPR032154Coatomer_g_Cpla
IPR002553Clathrin/coatomer_adapt-like_N
IPR017106Coatomer_gsu
IPR009028Coatomer/calthrin_app_sub_C
IPR013041Coatomer/clathrin_app_Ig-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030126COPI vesicle coat
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0030117 membrane coat
molecular_function GO:0005488 binding
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainGENE3D2.60.40.1480coord: 617..764
e-value: 3.0E-62
score: 208.8
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainPFAMPF08752COP-gamma_platfcoord: 617..763
e-value: 8.4E-60
score: 201.2
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 23..616
e-value: 3.1E-88
score: 296.1
IPR032154Coatomer subunit gamma, C-terminalPFAMPF16381Coatomer_g_Cplacoord: 766..878
e-value: 4.6E-38
score: 129.8
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalPFAMPF01602Adaptin_Ncoord: 26..539
e-value: 2.3E-127
score: 425.7
NoneNo IPR availableGENE3D3.30.310.10coord: 766..878
e-value: 6.3E-39
score: 132.3
NoneNo IPR availableCDDcd00020ARMcoord: 254..349
e-value: 0.00541841
score: 35.368
IPR017106Coatomer gamma subunitPIRSFPIRSF037093Gamma-COPcoord: 4..879
e-value: 0.0
score: 1202.3
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainSUPERFAMILY55711Subdomain of clathrin and coatomer appendage domaincoord: 768..878
IPR013041Coatomer/clathrin adaptor appendage, Ig-like subdomainSUPERFAMILY49348Clathrin adaptor appendage domaincoord: 612..767
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 28..553

Blast
[Close]
BLAST of TCONS_00005354-protein vs. Swiss-Prot (Human)
Match: COPG1 (Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1)

HSP 1 Score: 1201.42 bits (3107), Expect = 0.000e+0
Identity = 582/881 (66.06%), Postives = 727/881 (82.52%), Query Frame = 0 
Query:    3 ILRK-DKKDEESGI-FNPFQGIDKSTVLQESRVFHDTPINTRKCIHILSKVLYLINQGTHIGTTEATETFFAMTKLFQSKDVTLRRMCYLAIKELANIAEDVIIVTSSLTKDMTGKDEGFRAPAIRALCRITDSQMLAGIERYLKQAIVDKNPSVASAALVSSLHLLKPNFDVVKRWVNEAQEAVSSDNVMVQYHGLGLLYHIKQNDRLAVSKLITKQARQSLRSPYAYCLLVRIAAKYIDEDPENPENTPLSEFLESCLRHKSELVIYEAARALVNLKSVKSKDLDPAVSVLQLFLSSPRPTLRFAAVRTLNKVAIMQPQSVMVCNLDLENLITDVNRSIATLAITTLLKIGNENSIDRLMKQISTFMSEISDEFKIVVVEAIRSLCLKFPRKHSVMMNFLSSMLREEGGFGYKKAIVDAVVTIIEDNNDAKESGLAHLCEFIEDCEHTTLATKILHLLGQEGPRTSTPSKYIRFIYNRVILENAEVRAAAVTSLAKFGAHCDALLPSILVLLSRCMMDTDDEVRDRATFYYHVLRKEDKQLASSYILNTLSVSIVGLERALAAYLKEPTDKPFDMKTVPIATVPMHDQKAVKTSGESTGV-AQKASTTSVTTRQDVYAEQLAAVPEIAALGPLFKSTSKPIQLTESETEYVVSCIKHTFADHMVFQFNCTNTLNDQILENVTVQMETGDEAEVVNYIPCHVLKYGTPSTTYTIVQYP-EDAATVSASFTCTLKFIVKDCDPGTGEPDDDEGYDDEYVLEDVEMVVADHVQGVVRTNFLASWDEIDDENEMEETFALSSMSSLEEAVTKITQFIGLQPCERSDRVPEGKSSHTLLLAGVYRGGIDVMVRSRLALKDGVTMHLTVRSQDPIVSEVVMSAVG 879
            +L+K DKKDEESG   NPFQ ++KS VLQE+RVF++TPIN RKC HIL+K+LYLINQG H+GTTEATE FFAMTKLFQS D TLRRMCYL IKE++ IAEDVIIVTSSLTKDMTGK++ +R PA+RALC+ITDS ML  IERY+KQAIVDK PSV+S+ALVSSLHLLK +FDVVKRWVNEAQEA SSDN+MVQYH LGLLYH+++NDRLAV+K+I+K  R  L+SP+AYC+++R+A+K ++E+ +   ++PL +F+ESCLR+K E+V+YEAA A+VNL    +K+L PAVSVLQLF SSP+  LR+AAVRTLNKVA+  P +V  CNLDLENL+TD NRSIATLAITTLLK G+E+SIDRLMKQIS+FMSEISDEFK+VVV+AI +LC K+PRKH+V+MNFL +MLREEGGF YK+AIVD +++IIE+N+++KE+GL+HLCEFIEDCE T LAT+ILHLLGQEGP+T+ PSKYIRFIYNRV+LE+ EVRA AV++LAKFGA  + +LPSILVLL RC+MD D+EVRDRATFY +VL ++ K L + YILN L+VSI GLERAL  Y  EP++KPFD+K+VP+AT PM +Q+      EST + A K       TRQ+++ EQLAAVPE   LGPLFKS+ +P+ LTESETEYV+ C KHTF +HMVFQF+CTNTLNDQ LENVTVQME  +  EV+ Y+P   L Y  P T YT+V  P ED   V+ +F+C +KF VKDCDP TGE  DDEGY+DEYVLED+E+ VADH+Q V++ NF A+WDE+ DE E EETF LS++ +LEEAV  I +F+G+ PCERSD+VP+ K++HTLLLAGV+RGG D++VRSRL L D VTM +T RS + +  ++++++VG
Sbjct:    1 MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCMMIRVASKQLEEE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTTNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQYTLEPSEKPFDLKSVPLATAPMAEQRT-----ESTPITAVKQPEKVAATRQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGE-TDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILASVG 874
The following BLAST results are available for this feature:
BLAST of TCONS_00005354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPG10.000e+066.06Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 ... [more]
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