TCONS_00005367-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005367-protein
Unique Name	TCONS_00005367-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	555

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005367-protein ID=TCONS_00005367-protein|Name=TCONS_00005367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp
MGCMKLGRNPTFYSMMFLTTSFFFVEIIVGYMTNSMALVADSFHMLSDII
SLFVGFFAMRYSKMTKGDVFTSNTFGWARAEVLGALVNSVFLVALCFSIL
VEAFKRLVEPEGLNDPDLILIVGGTGLLINVIGMFLFHGHGSAHGHSHGG
GGHGHSHGHSHQEEIAHDDVTDFQTPKDKHTNLKSIKGTTVGIHNMSFDA
DETITPRENHEFVIAVDFQDGNVEEQTDKECKKSKKSKAPQSSQQMNMRG
VYLHILGDALGSVIVIIAALIIKYFEGRWTLYVDPGMSIIMVGIILKTSV
PLLKESSTILLQHVPSHIQLKTLQEKLLVTFPEIRAVHEFHVWQLTGSRI
VASLHVMFTSSDDYNELSTSMKKFFHKEGIHSTTVQPEFIEDEEHLGDEN
ICLLACPDEECAEKVCCKPKKSNSTAPSETGSIRSTGSGRSRNSGGCASP
KEESKSRPGSTRSENKSGRNSPDEENARPSSANSQNSFYKQPENDDKNTD
SNSESLEVENNDTRIDIQISPRSQTASPDITKSKNSEFEEIQIVVDNNSD
EESHL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003047	XLOC_003047	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005367	TCONS_00005367	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002524	Cation_efflux
IPR027470	Cation_efflux_CTD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008324	cation transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006812	cation transport
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008324	cation transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002524	Cation efflux protein	TIGRFAM	TIGR01297	TIGR01297	coord: 14..388 e-value: 2.7E-65 score: 218.4
IPR002524	Cation efflux protein	PFAM	PF01545	Cation_efflux	coord: 15..311 e-value: 1.8E-54 score: 184.4
IPR027470	Cation efflux protein, cytoplasmic domain	GENE3D	3.30.70.1350		coord: 313..391 e-value: 0.0013 score: 18.6
None	No IPR available	GENE3D	1.20.1510.10		coord: 9..311 e-value: 2.1E-71 score: 239.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..555
None	No IPR available	SUPERFAMILY	161111	Cation efflux protein transmembrane domain-like	coord: 241..312 coord: 13..141

Blast

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BLAST of TCONS_00005367-protein vs. Swiss-Prot (Human)
Match: ZNT10 (Zinc transporter 10 OS=Homo sapiens GN=SLC30A10 PE=1 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.872e-87
Identity = 159/425 (37.41%), Postives = 242/425 (56.94%), Query Frame = 0

Query:    7 GRNPTFYSMMFLTTSFFFVEIIVGYMTNSMALVADSFHMLSDIISLFVGFFAMRYSKM-TKGDVFTSNTFGWARAEVLGALVNSVFLVALCFSILVEAFKRLVEPEGLNDPDLILIVGGTGLLINVIGMFLFHGHGSAHGHSHGGGGHGHSHGHSHQEEIAHDDVTDFQTPKDKHTNLKSIKGTTVGIHN-MSFDADETITPRENHEFVIA-VDFQDGNVEEQTDKECKKSKKSKAPQSSQQMNMRGVYLHILGDALGSVIVIIAALIIKYFEGR------WTLYVDPGMSIIMVGIILKTSVPLLKESSTILLQHVPSHIQLKTLQEKLLVTFPEIRAVHEFHVWQLTGSRIVASLHVMFTSSDDYNELSTSMKKFFHKEGIHSTTVQPEFIEDEEHLGDENICLLA---CPDEECAEKVCCKP 419
            G+      M+ LT +FF  E++ GY+ NS+AL++DSF+MLSD+ISL VG  A   ++  T+G    S T+G+ARAEV+GAL N+VFL ALCF+I VEA  RL  PE ++DP+L+LIVG  GLL+NV+G+ +F    +       G            E         F  P+      ++   T  G  + ++         RE    V A V     N + + +   KK KKS+A      +N+RGV LH++GDALGSV+V+I A+I      +      W  Y+DP ++++MV IIL ++ PL+KE++ ILLQ VP  + ++ L  K L   P I +VHE H+W+L   +I+A+LH+ +     Y + ST +++ FH  GIH+ T+Q E ++ +E L  +++ LL    C  + CA+++CC P
Sbjct:    6 GKTCRLLFMLVLTVAFFVAELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIARRPTRG---FSATYGYARAEVVGALSNAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGVLGLLVNVVGLLIFQDCAAWFACCLRGRSRRLQQRQQLAEGCVPG---AFGGPQGAEDPRRAADPTAPGSDSAVTLRGTSVERKREKGATVFANVAGDSFNTQNEPEDMMKKEKKSEA------LNIRGVLLHVMGDALGSVVVVITAIIFYVLPLKSEDPCNWQCYIDPSLTVLMVIIILSSAFPLIKETAAILLQMVPKGVNMEELMSK-LSAVPGISSVHEVHIWELVSGKIIATLHIKYPKDRGYQDASTKIREIFHHAGIHNVTIQFENVDLKEPLEQKDLLLLCNSPCISKGCAKQLCCPP 417

The following BLAST results are available for this feature:

BLAST of TCONS_00005367-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZNT10	1.872e-87	37.41	Zinc transporter 10 OS=Homo sapiens GN=SLC30A10 PE...	[more]

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TCONS_00005367-protein (polypeptide) - C. hemisphaerica