TCONS_00005620-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005620-protein
Unique NameTCONS_00005620-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005620-protein ID=TCONS_00005620-protein|Name=TCONS_00005620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
MSGDKDLDSFLKKIDDVGSLIRDMNTGSEEKRSKAMEKADDFLTEYRQQQ
HSSDGSSAVNRSVINKYKDDEQKPKSQRNEMSQEAFMASVERDATERAER
RQKNLVTSTSYKEKGNSAFKSGHFTEAIEWYSKAISLSPDQVTYYSNRTQ
AYIKANHYEKALDDCDIGLRLDETFVKLYVHKGRSLMYLNRFQEAIETFQ
FLIKMDKKHKKLADEYLDEVEKRRLGHQNEEKANNLLTEGDDGMRQMKDE
IDKLRKGSCKDITKSLTVLAKCCRDETFRSGFRQFQGFKIFKENNTLKRI
EESDDVSIKRKCICLLSQLVLDDEQNSKMAGEMRGALYVAVELLDEQSPI
EHKVDALQFLNRLSVHKQSVALMNQNCPMEKLLNLLLPLIGQGGEMAIVA
IGLLNNLALVKEFVIRFKDKLSENFVPGIFKMMELLCLPFESQQQVSLNF
LSVMNTSITTVSNLFLTPAIRNRFKSKQLWRPSILLMTKYISEKDDVTKL
KIVDTTLGMFVNLSINGFHLPKDDYQLFLDLSQLLLSSDVMKCERCMCIW
SYLMKDNTDLVKIAIEKKLPNHVIKVFKKHKGREEIVKHIIRCLAIFANQ
NNNVSLLLHSEKAIPLLLDLLTSKNSTIVGNIPQCLNSFTKINTIVEYLA
DYDLVGCLLNIVRDETFPKQVRYNCAVTIGKFGTADHRYLERLRELHGME
ILHQIMKEVGANK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003186XLOC_003186Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005620TCONS_00005620Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011989ARM-like
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 176..209
e-value: 0.14
score: 21.2
coord: 108..141
e-value: 5.1E-4
score: 29.4
coord: 142..175
e-value: 0.016
score: 24.3
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 177..209
e-value: 0.035
score: 14.2
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 108..141
score: 11.299
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 142..175
score: 6.52
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 176..209
score: 8.968
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 504..713
e-value: 2.3E-14
score: 52.6
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 251..503
e-value: 3.6E-8
score: 32.5
NoneNo IPR availableGENE3D1.10.150.160coord: 99..153
e-value: 1.1E-15
score: 56.9
NoneNo IPR availablePFAMPF13414TPR_11coord: 115..154
e-value: 2.0E-8
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..105
NoneNo IPR availableCDDcd00020ARMcoord: 546..640
e-value: 0.00407602
score: 35.368
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 154..237
e-value: 6.1E-12
score: 44.9
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 110..216
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 108..209
score: 22.971
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 429..707
coord: 265..386

Blast
[Close]
BLAST of TCONS_00005620-protein vs. Swiss-Prot (Human)
Match: TTC12 (Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 2.103e-64
Identity = 186/719 (25.87%), Postives = 351/719 (48.82%), Query Frame = 0 
Query:    4 DKDLDSFLKKIDDVGSLIRDMNTGSEEKRSKAMEKADDFLTEYRQQQHSSDGSSAVNRSVINKYKDDEQKPKSQRNEMSQEAFMASVERDATERAERRQKNLVTSTSYKEKGNSAFKSGHFTEAIEWYSKAISLSPDQVTYYSNRTQAYIKANHYEKALDDCDIGLRLDETFVKLYVHKGRSLMYLNRFQEAIETFQFLIKMDKKHKKLADEYLDEVEKRRLGHQNEEKANNLLTEGDDGMRQMKDEIDKLRKGSCKDI--TKSLTVLAKCCRDETFRSGFRQFQGFKIFKENNTLKRI--EESDDVSIKRKCICLLS--QLVLD-DEQNSKMAGEMRGALYVAVELLDEQSPIEHKVDALQFLNRLSVHKQSVALMNQNCPMEKLLNLLLPLIGQGGEMAIVAIGLLNNLALVKEFVIRFKDKLSENFVPGIFKMMELLCLPFESQQQVSLNFLSVMNTSITTVSNLFLTPAIRNRFKSKQLWRPSILLMTKYISEKDDVTKLKIVDTTLGMFVNLSINGFHLPKDDYQLFLDLSQ----LLLSSDVMKCERCMCIWSYLMKDNTDLVKIAIEKKLPNHVIKVFKKHKGREEIVKHIIRCLAIFANQNNNV-SLLLHSEKAIPLLLDLLTSKNSTIVGNIPQCLNSFTKINTIVEYLADYDLVGCLLNIVRDETFPKQVRYNCAVTIGKFGTADHRYLERLRELHGMEILHQIMKEVG 710
            +KDL  FLK +D++ +LI++MN+     + KA+ + +  L    + Q   +  + +N+++I+      Q       E++ EAF+ASVE+DA ERA+RR++N V + + KEKGN AF  G++  AI  YS+ +    D    Y+NR QAY+K   YEKAL DC+  L+ DE   K Y H G++ + L  +  + E ++ +++++ K +     YL++V+ +      E++A+ LL  G +     K+ ++ L K     +     + +L +   + T ++ FR   GF I  +N  ++R      +D   +  C+ +L   Q V   +E+N ++         +   LL  +  +  +  +   L  L+  +   +L+  +  + +LL  L+  +    + A  A+GL  +LAL + F + F+  L     PG+   +  +    ++  +VS +  S +   I  + NL   P  R    + + +    L +     E  D+ + +++ T LG+ +NL +     P       +++S+    LL S D     R   + S  +  +  +V+ A+   +   ++K  K   G E   ++ I+ LAI  N  +     ++  +K + +++ LL+S++  +VGN   CL +  ++  +   L   DL+  LL +   +T    V+ N  + +GK  TA+ R+  +LR+LHG+EIL+  MK + 
Sbjct:    6 EKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISP----PQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSK-VLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANL-----PGVLPALTGV---LKTDPKVSSS--SALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFR-EVIYTLLGLMMNLCLQA---PFVSEVWAVEVSRRCLSLLNSQDGGILTRAAGVLSRTLSSSLKIVEEALRAGVVKKMMKFLK--TGGETASRYAIKILAICTNSYHEAREEVIRLDKKLSVMMKLLSSEDEVLVGNAALCLGNCMEVPNVASSLLKTDLLQVLLKLAGSDTQKTAVQVNAGIALGKLCTAEPRFAAQLRKLHGLEILNSTMKYIS 703
The following BLAST results are available for this feature:
BLAST of TCONS_00005620-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC122.103e-6425.87Tetratricopeptide repeat protein 12 OS=Homo sapien... [more]
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