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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005620 ID=TCONS_00005620|Name=TCONS_00005620|organism=Clytia hemisphaerica|type=transcript|length=3124bpRun BLAST on NCBI protein sequence of TCONS_00005620-protein >TCONS_00005620-protein ID=TCONS_00005620-protein|Name=TCONS_00005620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp MSGDKDLDSFLKKIDDVGSLIRDMNTGSEEKRSKAMEKADDFLTEYRQQQRun BLAST on NCBI transcript from alignment at sc0000054:175141..210361- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005620 ID=TCONS_00005620|Name=TCONS_00005620|organism=Clytia hemisphaerica|type=transcript|length=35221bp|location=Sequence derived from alignment at sc0000054:175141..210361- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:175141..210361- >TCONS_00005620 ID=TCONS_00005620|Name=TCONS_00005620|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000054:175141..210361- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005620 vs. Swiss-Prot (Human)
Match: TTC12 (Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=1 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.134e-57 Identity = 183/717 (25.52%), Postives = 349/717 (48.68%), Query Frame = 1
Query: 850 DKDLDSFLKKIDDVGSLIRDMNTGSEEKRSKAMEKADDFLTEYRQQQHSSDGSSAVNRSVINKYKDDEQKPKSQRNEMSQEAFMASVERDATERAERRQKNLVTSTSYKEKGNSAFKSGHFTEAIEWYSKAISLSPDQVTYYSNRTQAYIKANHYEKALDDCDIGLRLDETFVKLYVHKGRSLMYLNRFQEAIETFQFLIKMDKKHKKLADEYLDEVEKRRLGHQNEEKANNLLTEGDDGMRQMKDEIDKLRKGSCKDI--TKSLTVLAKCCRDETFRSGFRQFQGFKIFKENNTLKRI--EESDDVSIKRKCICLLS--QLVLD-DEQNSKMAGEMRGALYVAVELLDEQSPIEHKVDALQFLNRLSVHKQSVALMNQNCPMEKXXXXXXXXIGQGGEMAIVAIGLLNNLALVKEFVIRFKDKLSENFVPGIFKMMELLCLPFESQQQVSLNFLSVMNTSITTVSNLFLTPAIRNRFKSKQLWRPSILLMTKYISEKDDVTKLKIVDTTLGMFVNLSINGFHLPKXXXXXXXXXXXXXXXXX---VMKCERCMCIWSYLMKDNTDLVKIAIEKKLPNHVIKVFKKHKGREEIVKHIIRCLAIFANQNNNV-SLLLHSEKAIPLLLDLLTSKNSTIVGNIPQCLNSFTKINTIVEYLADYDLVGCLLNIVRDETFPKQVRYNCAVTIGKFGTADHRYLERLRELHGMEILHQIMKEV 2967
+KDL FLK +D++ +LI++MN+ + KA+ + + L + Q + + +N+++I+ Q E++ EAF+ASVE+DA ERA+RR++N V + + KEKGN AF G++ AI YS+ + D Y+NR QAY+K YEKAL DC+ L+ DE K Y H G++ + L + + E ++ +++++ K + YL++V+ + E++A+ LL G + K+ ++ L K + + +L + + T ++ FR GF I +N ++R +D + C+ +L Q V +E+N ++ + LL + + + + L L+ + +L+ + + +LL L+ + + A A+GL +LAL + F + F+ L PG+ + + ++ +VS + S + I + NL P R + + + L + E D+ + +++ T LG+ +NL + + + LL+S ++ R + S + + +V+ A+ + ++K K G E ++ I+ LAI N + ++ +K + +++ LL+S++ +VGN CL + ++ + L DL+ LL + +T V+ N + +GK TA+ R+ +LR+LHG+EIL+ MK +
Sbjct: 6 EKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISP----PQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSKV-LAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANL-----PGVLPALTGV---LKTDPKVSSS--SALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFR-EVIYTLLGLMMNLCLQAPFVSEVWAVEVSRRCLSLLNSQDGGILT--RAAGVLSRTLSSSLKIVEEALRAGVVKKMMKFLK--TGGETASRYAIKILAICTNSYHEAREEVIRLDKKLSVMMKLLSSEDEVLVGNAALCLGNCMEVPNVASSLLKTDLLQVLLKLAGSDTQKTAVQVNAGIALGKLCTAEPRFAAQLRKLHGLEILNSTMKYI 702 The following BLAST results are available for this feature:
BLAST of TCONS_00005620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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