TCONS_00005652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005652-protein
Unique NameTCONS_00005652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005652-protein ID=TCONS_00005652-protein|Name=TCONS_00005652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MSSKRGASGDGSEPPSKKKAFLLSQTAVNLGPISTEEELDLKVVKIQNAK
LYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNL
LKRFGDVSEDEALAMSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIE
RLVVRIEKNMKRNKELIETLKNDKKEEKKSLGEKKVEGDQNDFEDERNDI
SSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQ
KENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQGSKSSGGSSAVSG
SSQQAVSSGGGGGHVKLVKDTPEDIKAEMDAKDELANNRLEELKKLQELY
QNLHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCE
EARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLE
LLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTD
VEKKLGDIDKTKSPDKERDISDYIDLIDAPNAPTSASSSRSESSHSSDEG
DYDDVKMLRTKLKLVHMVYIIPFHFKFVIFDED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003195XLOC_003195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005652TCONS_00005652Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 326..363
NoneNo IPR availableCOILSCoilCoilcoord: 470..504
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availableCOILSCoilCoilcoord: 153..187
NoneNo IPR availableCOILSCoilCoilcoord: 225..287
NoneNo IPR availableCOILSCoilCoilcoord: 421..466
NoneNo IPR availableGENE3D1.20.5.400coord: 201..272
e-value: 2.0E-5
score: 24.0
NoneNo IPR availableGENE3D1.20.120.570coord: 44..184
e-value: 0.017
score: 14.1
NoneNo IPR availableGENE3D1.20.5.50coord: 380..529
e-value: 1.8E-5
score: 23.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 508..552

Blast
[Close]
BLAST of TCONS_00005652-protein vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 241.891 bits (616), Expect = 1.889e-69
Identity = 174/547 (31.81%), Postives = 286/547 (52.29%), Query Frame = 0 
Query:    2 SSKRGASGDGSEPPSKK-----KAFLLSQTAVNLGPISTEEELDLKVVKIQNAKLYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNLLK-----------------RFGDVSEDEALA------------------MSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIERLVVRIEKNMKRNKELIETLKNDKKEEKKSLGEKKVEGDQNDFEDERNDISSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQKENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQGSKSSGGSSAVSGSSQQAVSSGGGGGHVKLVKDTPEDIKAEMDAKDELANNRLEELKKLQELYQNLHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCEEARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLELLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTDVEKKLGDI 508
             +KR A   GS PP KK     K        + LG IS+ EE+DLKV++ +N KL  +LE++ A E+E + R  KLE+ +  D   +  +N  W QLD+ V  LL+                 + G   +   L                   +SE  +AF+  L   +++    E+Q R+  S + + R+V   ++  +R +EL + + +               GD      E     + EL           EN +L D  T LQ+K+  +S EYSE++D++ + + +  E++   ED+++D+++  K+ +KL K L E  EQ +     S + SG     ++         L     E + AE++   ELAN+R+ EL+KLQ   Q     +++LK  L  LP+EV+    +Y+MLQ QF+L YN++ +++   +EAR +++  ++ H++  EH E +    +KK+R E+ QLE  LA+ RK+ E+LR+E+E N+ A+EQ GP+ +EMRHLI+SLQNHN QLKG+  RYK+KL +V+ ++G +
Sbjct:    5 GNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYS--------------RGDSEPL-SEAAQAHTREL---------GRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGGQIT---------LSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKL 518
The following BLAST results are available for this feature:
BLAST of TCONS_00005652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B1.889e-6931.81E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
back to top