TCONS_00005652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005652
Unique NameTCONS_00005652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=transcript|length=1909bp
AAATCCTTTACTCAACATCTGTTTTAGTCCAGAGAAAAAATGAGTTCAAA
GAGAGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAAAGAAGAAAGCTT
TTTTGCTGTCACAAACAGCTGTAAATCTTGGACCCATATCGACTGAgGAA
GAACTTGACTTGAAAgttgtcaaaattcaaaatgccaAATTGTACTCAAA
ATTGGAAGAGAAGAACGCACAAGAAGAAGAGTCCAAAGTGCGATTCGCCA
AATTGGAACGCCTTCGTAACAATGATCAGAATATTATCTCTTCAATGAAT
GTTGCTTGGAACCAGCTTGATCAAGATGTGAACAACTTGCTCAAAAGGTT
TGGTGATGTCTCTGAAGATGAAGCACTAGctATGAGTGAAACAACGGTAG
CATTCCTGGAGAAACTATCCAATCGAACGACCAAAGGAACATCAGAAGAA
ATCCAAAAGAGAGTCACACACTCTAGTTCTATAATCGAACGTTTGGTCGT
TAGAATAGAGAAAAATATGAAGAGAAATAAAGAACTTATTGAAACGCTGA
AGAATGACAAGaaggaggaaaagaaatctCTGGGCgagaaaaaagttgaa
ggagATCAAAATGATTTTGAGGACGAGAGGAACGACATTTCATCAACTGA
GTTGGAATTGAGACAAGAATTGTCGTTGACCaagagtgaaaatttgaaat
tgcaCGATTCGATGACATCCCTACAGGACAAGTACCGGACCATGTCAACT
GAGTATTCCGAAATGAAAGATAGACTAGCGACCATGCAAAAAGAGAACGC
TGAACTCAAAGCCAAACAAGAAGATATGGAGTATGACTTGCAACGGGCTA
CCAAACAATTCGAAAAACTAATCAAGAAATTGAACGAGACTCACGAACAG
GGTTCCAAGTCTAGTGGAGGCAGTAGCGCGGTGAGCGGTTCTTCGCAACA
AGCAGTAAGCAGTGGCGGCGGTGGTGGACACGTGAAGCTGGTCAAAGATA
CTcctGAAGATATTAAAGCAGAGATGGATGCTAAAGACGAGTTAGCCAAC
AACCGTCTTGAAGAATTGAAGAAGTTACAAGAACTCTATCAAAACCTGCA
TGTTGAGCACGACAAGTTGAAGCAACAGCTGATGCAACTTCCAGACGAAG
TTATCATCAATCACACGAAATACAAAATGTTGCAAACGCAATTCAATTTG
TGTTACAATGACGCACAAGAGATACGGCGACATTGCGAAGAAGCACGCAA
GATAGTGGTCAACAACAGAAGCCAACACATACAACAACAAGAACATTACG
AGATGGAGATTCAAACACAGCGCAAAAAAGTACGCGCAGAAATCTCTCAA
CTTGAGAGAGCGTTGGCTGAATCAAGAAAGGATTTGGAATTGCTGAGAGT
AGAGTATGAACACAATATGAAAGCCCACGAACAAATTGGACCAATGGCTA
AAGAAATGAGACATCTCATCAATAGTTTACAGaaccACAACCAACAACTG
AAAGGAGAAGTATCACGGTACAAAAAGAAGTTGACCGATGTTGAAAAGAA
ACTAGGAGACATTGATAAAACAAAATCGCCTGACAAGGAGCGCGACATCA
GCGATTACATCGATCTCATCGACGCTCCCAACGCACCTACGTCCGCTTCT
TCATCGCGGTCGGAGTCGAGTCATTCGAGCGATGAAGGGGACTACGATGA
CGTCAAAATGTTAAGGACCAAACTGAAGTTAGTACATATGGTTTATATTA
TACCTTTTCATTTTAAGTTTGTTATTTTTGACGAGgactaaatttgacaa
atttaaaCAACatcatagcttcagccaggtttctagctccccccaacaaa
gtaaggtccccccaacaatttagctccccccaaaaaattgccttgtgcta
ggtccccta
Run BLAST on NCBI

protein sequence of TCONS_00005652-protein

>TCONS_00005652-protein ID=TCONS_00005652-protein|Name=TCONS_00005652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MSSKRGASGDGSEPPSKKKAFLLSQTAVNLGPISTEEELDLKVVKIQNAK
LYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNL
LKRFGDVSEDEALAMSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIE
RLVVRIEKNMKRNKELIETLKNDKKEEKKSLGEKKVEGDQNDFEDERNDI
SSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQ
KENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQGSKSSGGSSAVSG
SSQQAVSSGGGGGHVKLVKDTPEDIKAEMDAKDELANNRLEELKKLQELY
QNLHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCE
EARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLE
LLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTD
VEKKLGDIDKTKSPDKERDISDYIDLIDAPNAPTSASSSRSESSHSSDEG
DYDDVKMLRTKLKLVHMVYIIPFHFKFVIFDED
Run BLAST on NCBI

transcript from alignment at sc0000054:443912..456301-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=transcript|length=12390bp|location=Sequence derived from alignment at sc0000054:443912..456301- (Clytia hemisphaerica)
AAATCCTTTACTCAACATCTGTTTTAGTCCAGAGGTTCACTTTCGTTCCA CATCTTCTTCTAATTTTTGCATATCAAATAAGTTTGAAAATGATTGTCAA CAACAACAAAGTGCTCTACCAGAAGGAGCCTTATAACAAAACAAAAATTC AAAATTTTATTTTTTGTAGTTTCTTGCGTACAATCATCAGCTACATACAA GTTAGATCTTTGTGTCTGTAGCTGGCGCTTGTACGCAAGAAACTTTAAAG TACTACAAAAAATGAAGTTTTGAATTTTTGTTTTGTTAATTTTTGCATAA GGGCTACTTAGACTACACAATATATTGACAAACAATATTTGACAATATCG TTTTCGGACCGTAATGTACGATGTAAATAACAGGTGCTCTATTATGAAAA GGAATTTTCCTTCTGTAAACAATCCCCTTATATTGTTGGAAAATTGTAAA TCGAGCTGACAATATATTGCAGACACCTGACAATATATTGTGTAGTGTAT GTAGCCCTATAGACATGTGTCTGCCATTTTGTTTAATTTTCTTTATGCTC ACTCAAACTTTTTCTAAATTAATATTTCCGATCTTCCAAACAAAACGTGG GATTTAGGTCATGTGATTACATAGTTCCGATCTTCTAATCAAAAGGCAGG ATTACATGACTACCGATGTCTTCAACATCATTGAATTTTTTAATTGCAGT GTGCTAGAAATTCAAAGATGGTGGCGAAATGGTGTGTAGGGAAGGTTTTA TAGGCAATTTCAGATGATGGAACTGGGAAATTTTAAAAGAAAACAAAGTA ATGAACTTTTATTAAAATAATGAACTTTTTTAACCGGCAGCTTGAAGGCA TACAGGCGGTCGACATTAAACCGGTTCATTAACTTCCCTCGCCTAATTAA TCCTGTAATTCTGTGAAAAAGTTTAGAAATTATCTCCATTATTTTTTTAA TATGAACTATGCGAGCTGTAGGAAAAATAAAGATGGATGATTCATCAATC AGTGAATCTCTAAAGAGGATTGTCAGAGTTAGATCGGAGATGTTGACATT AGACCAACTGCAGTATGTTTTCCGCAGTATACAATAAGTTGATATGTTAT GATTTGAAACATTGGTTGGAAAATGGCTAGCAAAAAAAACTTCATTGCAA ACTTTAATGCAAAGGGACTTTTGAACCTGTGTAGCCAAATAGGGGGTTTA ACGTTAAAGCTGGGAAAAAAGAAGCAAGGCGGCTTGAAATGATGATTTCA AGCAAGTGGGTTGAACAAAATGTCTGTTTAGGGTTGCTTTAGCTTATTTC TGGGTCAAATAAGAATCTATTTGGGTTAGACATTTTCGATGTTCAACCAT TTATTTCAAGCCCTGAGATGAAAGGGGTTAGATTAGGGTTGAGCTGAATG AGATGAGATCCATTTTTAGGCTGTCTCTTGATCCTTTGACCACTATGTAA TACTTGAAAAACTAGAATTGTTGAACTAGGTTCTGCTAATTTGTTTAGCT TTATTAAAAGACCGGTTCAATTATTGGTCTGACACAATTAACCTAAGGGT TCTCTTGTCTTTTATTGATCAGAGCACTATATATTGTGGAAATTAGACAG AACACGCTGAAAAAGCTGAAATTGCCATTGTATGGCTTGTGTTAGACACT AAGTTACTGTCACTTTCTTCTTCAAGCACTGAAACACCACAGTAAATGGG CTTATCATATTACACTGTCACACCTAAATGAGACATTAGCATGTCATTAG GGTGGAGTAAAACCGCCATTTTTTTGGTGAAACTAGAAAATGTGTTTTTT AAACCTATATGTGAGGCATTCTGTGCTATTTTCAATGAAGTCCAAATTGA TTGATTTGCATTACAATTAAAGAATATATATATTACAATTGCTAATTAGG TTTTTAATTTTTTTTAGCTGTACTAAGAAAAGAGCCCAAGTAATTTAGTT TGCAGTCAGAGGCGACCTGAAGACCCCTTTTTCGATAGCTATCTACTCGA AGGGTAGGGGTGGGTGCCACTCTTTCTCCCTAGATTGATCCATTTACCCT TGATCCTTCTCTTAATTACTGAGCATCTAGTTGAGACGCATCAAGTTCAC TGTGTGTTCTACCACTGCCCTACGTTTGCTAAATTTAACAAAGATGAAGC TAGACTTGTCTCAAACAATAAAGAATTATGAATTGATTATTTTTGTTAAT GAGTGAACAAATATATTGAAAATTGATTTGCTTTGTCCAATCAATATCCA CCAAGTTTGAATCAAGTTTGAATATTTTGAAATACCCAATTTTTTTGTTG AATATCTGCTTATTATTACAACTATTTTAACAATAAATGTCTGAAATTTT CAGAGTTGGAAGTCTTTAATAAGGTCTCAAAACAAACACATTTTAAATCA TTGTCATTCAAAAATTCTTTATATTTCATTATAGAAAAAATGAGTTCAAA GAGAGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAAAGAAGAAAGCTT TTTTGCTGTCACAAACAGCTGTAAATCTTGGACCCATATCGACTGAGGTG ATTTTTAATTTTTCTCAAAATATAGCCATAACGTTATATTATTGTGTTAT TATAGAAATTATTTTCGCGGAAATATGATGCTAAAGTTCCTGTGACTATA NATCAAGTTCACTGTGTGTTCTACCACTGCCCTACGTTTGCTAAATTTAA CAAAGATGAAGCTAGACTTGTCTCAAACAATAAAGAATTATGAATTGATT ATTTTTGTTAATGAGTGAACAAATATATTGAAAATTGATTTGCTTTGTCC AATCAATATCCACCAAGTTTGAATCAAGTTTGAATATTTTGAAATACCCA ATTTTTTTGTTGAATATCTGCTTATTATTACAACTATTTTAACAATAAAT GTCTGAAATTTTCAGAGTTGGAAGTCTTTAATAAGGTCTCAAAACAAACA CATTTTAAATCATTGTCATTCAAAAATTCTTTATATTTCATTATAGAAAA AATGAGTTCAAAGAGAGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAA AGAAGAAAGCTTTTTTGCTGTCACAAACAGCTGTAAATCTTGGACCCATA TCGACTGAGGTGATTTTGAATTTTTCTCAAAATATAGCCATAATGTTATA TTATTGTGTTATTATAGAAATTATTTTCGCGGAAATATGATGCTAAAGTT CCTGTGACTATTTTTAGTGACTTAATCTTCTTTTCTTATCGGTAAGAAGT ATTGTAGTTTCTTCTTCATGGGTATTTTTGGAGAAATTAGCTACACATTG TATAACATATACATATCTGTTTCATTTTCAATGTTAAAATAAGTCAACTT TGAACTGAACAAAGAATCTCTGCTCATTCGAGGCCATTGCTATTCACATT CTTGACTACAAATTTGGTAGCGTTAAACTTTGGTATTTTGAGATCATAAT GAATGATAATATAATGGTTTAAGATGTTTATTTCAATCTCATTTCTGCTG TAGGAAGAACTTGACTTGAAAGTTGTCAAAATTCAAAATGCCAAATTGTA CTCAAAATTGGAAGAGAAGAACGCACAAGAAGAAGAGTCCAAAGTGCGAT TCGCCAAATTGGAACGCCTTCGTAACAATGATCAGAATATTATCTCTTCA ATGAATGTTGCTTGGAACCAGGTACAGGATTTTTTCCTCAGTTTGACATA TTTTACTTTTCAAACTTTTTGTTCTAATATTGTTGAATTTTCCCCATATT GTTTTTGTATATTTTCAACTGCAATTAACGAACGGACGAAATTTTTGTTT CTTGAGTTATTAATTTCCATTTGATTTTATGTGTTTAAGCTGGTTTAAGT AGCTATACATTACCACAGAACCCATTTTCCGAGACCATCCTATTCCATTT GTTACGAATTACCAATGTTGCAAATTAAAATAATAACTATGTCTCTCTTT TCTCTTTTCCATTAGCTTGATCAAGATGTGAACAACTTGCTCAAAAGGTT TGGTGATGTCTCTGAAGATGAAGCACTAGGTATGGTGTTGTTTACTTTTA CAATGATTTTTGGCATTTCTATATGGTTTTATTCTTTGGAAATGTTTGCA GAAACCACATTATAGTGTTTTGGTCTTTAATAACATTCCTTGAAAGTGTG CAGTGGGCCAAAACACTTTAATTTGACCCCCTACATACAACACTGCTCAA TATCTTGTCAATATTTCTGAGATGAAAAACACAATGATAGTGGTAATAAA GAACTAATAAAAGGTCGTGTCTTGATAATTTCATGGGGATTTCGTTTGAA AACCAAAGTACAAAGTAAAAAATTTCCCTTCTAATCGCTTAATAATTTTA CATTAGAACCTTGTTTCATACCCGTCTTTCTGACAACTTGATATCGTTCT TAAAGGGATAATCAGATGGTTCGAGATATTTAGATTGCAGAAACCTTCTG TGGTCCTTAGTAAAACCTCAGAGTATTTTTGTGTAACAATTTTCCAAAAT CGAGATATCAAAATTTGAAATTTTTGAAAATGGGTTCTTACGTTGAAATT CTATTGTTTTCATCCTAAAAGTCAAAAACTTGTAACTTGAATATCTCGAC TTTGGAAAATAGTAAGGCAAAATTATTTCGAGATTTTGCTCAGGACAATA GAAGGATCCCACATGCCAAATATTACAAACCATCTGAGTATCCCTTTAAG ACCATGTTCAAACGTACCGGTTTCTGAAATAAAGCCATTCTATTGGTTAG AAATGACGTAAAAATTGAATTTAACCAATAGAATGAATGGATTCATTTCG TTTCTTCACCGTAGACACCGTAACCCGAAGCGTGTGAATGTAGTCTTAAA CTTAAATAANTTTCACCGTAGACACCGTAACCCGAAGCGTGTGAATGTAG TCTTAAACTTAAATATTGCTTTCTTTTGTTTAGCTATGAGTGAAACAACG GTAGCATTCCTGGAGAAACTATCCAATCGAACGACCAAAGGAACATCAGA AGAAATCCAAAAGAGAGTCACACACTCTAGTTCTATAATCGAACGTTTGG TCGTTAGAATAGAGAAAAATATGAAGAGAAATAAAGAACTTATTGAAACG CTGAAGAATGACAAGGTACTTTATCGGGGAAAAAATGTCGGAGTTTTATT TCGTGGGGGAAAAATTTCGTCACTGTCACGCGTTTATTAGTTACCTGAGA GTACAGTGGAACCTCTAATTAGCGGACACCATCGGGGAAAGGGGTTAGTG TCCGCTAATTAGAAGTGTCCGCCTTTTAGAAACTTTTGATCTCGGAGCTC CAATTTTGAAATTAGGCCATCCCAGGGTGTTAAAAATACAAAATTGGGGT CTAAAGTACTTATCTGCAGACACTAGGCCAAAGAAGAACAAGAGAAAGGT TATTAAAACAGAGCTCGAGTGACTGGCAAGAGGTTAAATCGAGGTAGTGG GTACGGACTTAAGTACCAGTGATTTATGATTCCTTTGGTCTACCTAAGTT TGTTGAATGGGTCAAGGGGAACTGGAAATTTGTAGAAATAATTTGAATAA TAAGACTAATAAGTGCTTGAAATAAAAATATCTAAAATTTTTTTTTTCGA TTTTGGACGTCTGTGCCCCGTTTGATATTCAATGTCCGCTAATTGGAGAG CTAAAATAGGGGTTTTGGCCATTTCGTGCGAAAAAAATTTGTCCGCTAAT CAGAGGGTCCGCTAATTCAGTGTCCGCCTTTTAGAAACTTTTTTATGAGG TTTTGACTAGGAAACGGCCGGGGAAATGAAATTGTCTGCTAATCAGAGGT GTCCGCCTTTTAGAGCGTCCGTTAATTAGAGGTTTTACTGTACTATCCTT TTGAACGCTGATTTACAGAGAGAACTTTTGGGTTTCATTAGAATATTGAA GATCTTTCATGTGAGATGTAGAGTCCTTTTCGTGTATATATTTTGCGTTG AAATGAATTGAAAAACAGCAATAAGGCTTTTGATGCGGGGTTCTTTCACA ATATTCAGAAATTGGTGCCCTGGTGTTGGATTTTCATAATCCAAGAAGAT TTCAATATTTTGATTTTTGGAATATTTTAATTCTTGGAATTTTCTTCTAG AAGGAGGAAAAGAAATCTCTGGGCGAGAAAAAAGTTGAAGGAGAGTAAGT ACTTTATATTTTGTATAAAATAATATCTTTCCATTTAAAATTACTTTTAG TTTATTCAACGACTTAATGTTTGTTTTTTCCAATTTTACCAAACTATCAT TTACTCATTAAATTAAAGGTGCAACACTGCAAATTTGATTCTAAACAAGT CCTCAAAACAAGAAGAAAAGAAGACACTGTGACGTGCGGCAAAGAATTTG AAAATTTCCTTAGATGTCGGTTTTGTATAGACAATCTTCCCAAGAAAAAT GTTTTAAACATAATTCTTTTTCAGTCAAAATGATTTTGAGGACGAGAGGA ACGACATTTCATCAACTGAGTTGGAATTGAGACAAGAATTGTCGTTGACC AAGAGTGAAAATTTGAAATTGCACGATTCGATGACATCCCTACAGGACAA GTACCGGACCATGTCAACTGAGGTAAAATTCATTCATTCATTCATTCATT CAATACTTTATTCATTCATTCATTCATTCATTCAATAATTTATTCATTCA TTCATTCAAAAATTTATTCATTCATTCATTCAATAATTTATTCATTCATT CATTCAATAATTTATTCATTCATTCATTCAATAATTTATTCATTCATTCA TTCAATAATTTATTCATTCATCCGTTCATTCAAAGAAGTTCTGGTCAGTC CTCGTGTTATTCTAGAGATCTGGCTCTCGGTAATCTCCCCTAAAGATAGT GTCGGAACAAAATATTTTCAACTTTTCAATGCTAAGTTGGTAGAATGCTT AAAAGCTTGGTACCCACTGAAGAAGATAAGTTAGCCGCGAAACACTTGTT CACAAAAAATGAATCCAGATATCTGGAATTAAATATAGAATAGAACCAAA AAAATTGATAAGCGACGGAGACTGATGGAGAATTACAATGTCTTCATTTT TTATTCCTCAATTATTTTCACCATATTGCAAATCGTCTAGATTCATTTCG CGATTCACTTATTTTTTAAGTGGACACCCAGCTTTTTCAAAAACTTTTCC CCCCGAACAAAATTTCTCTTTTTTTAATCTTTCAAGTATTCCGAAATGAA AGATAGACTAGCGACCATGCAAAAAGAGAACGCTGAACTCAAAGCCAAAC AAGAAGATATGGAGTATGACTTGCAACGGGCTACCAAACAATTCGAAAAA CTAATCAAGAAATTGAACGAGACTCACGAACAGGGTTCCAAGTCTAGTGG AGGCAGTAGCGCGGTGAGCGGTTCTTCGCAACAAGCAGTAAGCAGTGGCG GCGGTGGTGGACACGTGAAGCTGGTCAAAGATACTGTAAGCCTTTTTCTT TGCATAGATATTTAGTAGAGATGTTTAACACGCACGGGGAACACAAATTT GCTCAAGTTATTGAAATTTCGAGTTGTGAAGTACGGTTTATAAGGTTGGG CTTAAAAAATTGTTGGTTTGCCGTCACCCAAACCCTAGATTTTGGAGGTG GGTCGGTCGGAAAATTTTTTTATCTTGTTCATCCATGGAATTTTTGTCTG CATTTTGTAATTTTTGAAGAAGGAAAAATTCGATTTGTCGAAATAGCAAT AAAAGTCGGAAAGTTTAAAGAAGAATCGGTCGGCTGACGGTAAACCAACA TCAAGTCCAGCCTAAGGCATTGTTAACCTGGAGGAAGGATAGAAAACTCC GAGTTGAGGAGATATTCGAATTAAAGGAAACTCCATTGTATCTTTTTTGA TGTCATACTTTTTTCACCCCTTTTTTCAATTTTTTTTTTATTTTAAGCCT GAAGATATTAAAGCAGAGATGGATGCTAAAGACGAGTTAGCCAACAACCG TCTTGAAGAATTGAAGAAGTTACAAGAACTCTATCAAAACCTGCATGTTG AGCACGACAAGTTGAAGCAACAGGTGTGTAAAAACTAATGAGAAGATTTT TAGTTTAAAGTTATTTGAAAAATTTCCATTCAAGTCTTAACTTGAGAGCT CTAAATGTTTCCAATTACTAGGTAAGAATTTTTTTAATCAAAAAACTCTC AGCTGCCAAATTAACGGGAGGGGGGTTGCATGGAAAATTCAAATTTTAAT AGACGGGAGGGATGTAATTGCAAGTTGGGGTTGGAAATTATTTCTCTAAA TAACCCTAAAATAAGGTAATTATAGACTAGTAGAATAAGCCTGTTTGGAG CAAAATATAAGGGACTCTTTTTTTGACAGCTGAAAATATTTTTAAAGATC AACGAACGGAAGGCCCGTTTATTAGGCACCTAAAAGTAAAAATAAAAATG TGTTCGTTTGTTTCCACTACAGCTGATGCAACTTCCAGACGAAGTTATCA TCAATCACACGAAATACAAAATGTTGCAAACGCAATTCAATTTGTGTTAC AATGACGCACAAGAGGTATGAACCATTATTTTTTAAGCCCGAAGAGCTAG GGAGGAATATTCAACCTTTCTCAAGGCAAGAAAAATCGAAGCCTTGAGAT TTGTCCTGCTTTTGGAAATGACAGATTGAATTTAGGAATTTCTTTGTTTC CACGCGTCATATTTTTTTTCAAANAAATCCCGAAGAGCTAGGGAGGAATA TTTAACCTTTCTCAAGGCAAGAAAAATCGAAGCCTTGAGATTTGTCCTGC TTTTGGAAATGACAGATTGAATTTAGGAATTTCTTTGTTTCCACGCGTCA TATTTTTTTTCAAAATCTGGCGATATATATTTTACTGGCAATTTTGCGTT TGTGTGAAATCCACGCGGGGTGCACGTTTTAGATTGGGAATAGTAAGTTG TTTCATTTTCCACCCAAGAGTTTCATCTCAATGGTATGAACAGAAGAACC TTCTTTCCGCTGGTTTAAAATGAAGAAAGATTCGAATCCTAAAAGCTCCA ATCAGCAATATATTCAGTATCAATACAATAATATGCACTGAGATACTATT TCCTAAATTTTGGACATTGCTCCTTCTAAATTTCTGATCGCTGATCACTA AAATTCATGCTTTATCTCATCATTATTTCCCTCTTCTCTAAATCTTACAG ATACGGCGACATTGCGAAGAAGCACGCAAGATAGTGGTCAACAACAGAAG CCAACACATACAACAACAAGAACATTACGAGGTATAAACTCTATTCCTTT TCCATCCTTAAGTAAGTAAGTATGTCTGCAACCGCAGTCGGAGGTGACAC GAAGGCTCCTCTTTCGATAGCTATTGACCCGAAGCCTCCTCATTCGATAG CAATTACCCGAAGGCTCCTCTTTTGATAACTATTAACCCGAAGGTAGGGG AGGGCGCCACTCTTTTTCCCTGGATTTCTCCACTTACCCTTGACCCTCTT TTTAATTTCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGAGAAT CTTTGGTATGACCCGGCTGGGGTTCAAACTCACAACCTCCTCACGAACTG TAGCCGGATGCTCTACCACTGCACATCCTTAAAATTATCAACATTAAGGG TACCACTTTTAAAAAACTCCGATCAAAGATTTTACTTGAACGAAATCGAG AAACTGTCCAGGGTATATAAAGGTCAGTGGGTAGTAATTTATTCCATTTT CCTCATGACCCTTATTGAGTTATCATTTGAAAATGTCAGATGAACAAAAA AAATTGTATGAAAAATTTCCACGTTTGATATTACTTTTTCCTGTGAATAT TGCTTCCATCTTTCATAAAATGAAGCACCTAAAAGCAACGCATCACTGGG ATAAAACCACCTACCTCTTCTTTGTATTCATGATAAAATGCGGTTAAGTA AATCGGTAAAATCACGACAACGAACGAAAATTTAGCAGGCTAGTGAGTTT CAACCAATCAAATTTCGTATTTTCACTAGCCTTATACATTTTTCGTCCGT CGTCGTGATTATCCTTGTATGCTTAACCTCAGTAATATTGCAATGTCTTC AACGGACCCAACAGCTAATTGGTTGAAAGTGACGTATTGACTGATTATAC GTCACTAACAACCAATCAGCTGTTGGGTTCGTGATGTAATGTCAGAAGAC ATTGCAATGTTGCATATCATGAATTACTTCTCGTGAGCATACCTCTGGTA GCCTATTCAGACAGAGCTCCTCCACTATTGCTCGAAAGAAAAATGAAGCC TTCACATTAGCCCGATCTGAATTAAAGGTTAAAAAAGTCGATCAGCTTTT ATTGAATACACCTTTTCGACCGTAGTAGTGGGCATTTTTATCCGTTTTAC CACCCTAAAACCGTCCCAGTCTTTTTTTCACCCCTAAAAACAATAGAGAA AAGTGTAAGAAAGGATTTGATCGAGTTTAGGGTGGTAAATTAAATAATAA AGTGGTAAGCGCCTGACTGTGCGACTACGATCGAAAAGGTGTATTTGCTT GTTACTTTTTATCTCCAAGCAAAAAAATAATTGAATGGTGGCGTTCCATA TTTAGGACTGCCATAAATTGAATTGATCCCGTCTCACTTATTGCATGTTT TTCTAGATGGAGATTCAAACACAGCGCAAAAAAGTACGCGCAGAAATCTC TCAACTTGAGAGAGCGTTGGCTGAATCAAGAAAGGATTTGGAATTGCTGA GAGTAGAGTATGAACACAATATGAAAGCCCACGAACAAATTGGACCAATG GCTAAAGAAATGAGACATCTCATCAATAGTTTACAGGTATTGAAGCTGTT ATGCGAATTCGGACCCAGTCCTTCAGTTCGGTGTTCTATGATTCTGATAG CGCTCACAAAATGATATCATATCACGTCACTCAGTAAAATCAAAATTTGG TGCAAGTGGCTCTGGGTAAGAGATATCCGATGATGTTTGTTATTTTTACA ATGTCAAAAATATTTTATTGTATTTTTGCCTCAATCCTTTTTTGTATTTA CTCTCACAAAAAACGGATATGCTGCTCTTGAAAAAAACTCCTTAGTCTAT TTTTCTTTGACTTCCAAGAGTTCCTGCTTAACGTTATACCTAGTATCGAA CTTGAGTGCAACTGGTTTGGTTTAAAGCCGTGACTGCACGGATCTCTAAA GTATTTTAGAGCGTTCTGGCGTGTAGGGAACCTTTCAGTACATAATTACC GAATGATTGATTAATTTTGTTTTGAATATTAAGCCACAGATGACGTCTTA TATGTGCTAGATGAAACGCTTGAAATTGCTGACTCGTGAAATTTAATTCA AATGAAATTTTTGAAATCAGATTTCATTTTTGAATACCCTGTAAATCTGC TATTTATGGCAAAAATTAGCTTGATTAGTTTGATTGCCGTTGTTTTTTCT TTTTAGAACCACAACCAACAACTGAAAGGAGAAGTATCACGGTACAAAAA GAAGTTGACCGATGTTGAAAAGAAACTAGGAGACGTATGTAGCACACTAA GATAAATGTTAATTTTCGCCTTCCGGGGTGTTATTCAAATAATGACCTTG TTCTTGTCAACTTTTAATGCCTTTTCAAGGACACAGATTTAGGTTACTCG TAGTATTTTGCAACATTTTTGCATGACACTTAAAAACATTAGCGAGATTA TGTATCTGGAATTCTCTATGGCTACGGCTAAAGCGGCGAGGGAAATGGCG AGTAAGGCAAGTAATGGCGGGTGAAAGCAAGTTCGATATTTGACGTACGG CATTATGTCGACTTTGCTTATACGGTGTTTTGGTGTTTTTCCCGTACAGA GCAAAGTAGACAACGACATATCGCCTTTGGTGACGACCCGCATGGGCAGC CCCGCAACTGTAGCCGTAGAATATCTCCGATACATAATCTCGCTATTTTC AGCCACAGTGCATAGTGGCCAGCTTCTGATTAACCTCATCCAAACTTTAT TTCATCAATCTCAAATTGTTTTGATAGTGGAAAATATACAGATGGGATCT GAATAATACACTTGCTAAAGAACCATGTGCTATATTAACAGATTGATAAA ACAAAATCGCCTGACAAGGAGCGCGACATCAGCGATTACATCGATCTCAT CGACGCTCCCAACGCACCTACGTCCGCTTCTTCATCGCGGTCGGAGTCGA GTCATTCGAGCGATGAAGGGGACTACGATGACGTCAAAATGTTAAGGACC AAACTGAAGTTAGTACATATGGTTTATATTATACCTTTTCATTTTAAGTT TGTTATTTTTGACGAGGACTAAATTTGACAAATTTAAACAACATCATAGC TTCAGCCAGGTTTCTAGCTCCCCCCAACAAAGTAAGGTCCCCCCAACAAT TTAGCTCCCCCCAAAAAATTGCCTTGTGCTAGGTCCCCTA

Coding sequence (CDS) from alignment at sc0000054:443912..456301-

>TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000054:443912..456301- (Clytia hemisphaerica)
ATGAGTTCAAAGAGAGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAAA
GAAGAAAGCTTTTTTGCTGTCACAAACAGCTGTAAATCTTGGACCCATAT
CGACTGAGGAAGAACTTGACTTGAAAGTTGTCAAAATTCAAAATGCCAAA
TTGTACTCAAAATTGGAAGAGAAGAACGCACAAGAAGAAGAGTCCAAAGT
GCGATTCGCCAAATTGGAACGCCTTCGTAACAATGATCAGAATATTATCT
CTTCAATGAATGTTGCTTGGAACCAGCTTGATCAAGATGTGAACAACTTG
CTCAAAAGGTTTGGTGATGTCTCTGAAGATGAAGCACTAGCTATGAGTGA
AACAACGGTAGCATTCCTGGAGAAACTATCCAATCGAACGACCAAAGGAA
CATCAGAAGAAATCCAAAAGAGAGTCACACACTCTAGTTCTATAATCGAA
CGTTTGGTCGTTAGAATAGAGAAAAATATGAAGAGAAATAAAGAACTTAT
TGAAACGCTGAAGAATGACAAGAAGGAGGAAAAGAAATCTCTGGGCGAGA
AAAAAGTTGAAGGAGATCAAAATGATTTTGAGGACGAGAGGAACGACATT
TCATCAACTGAGTTGGAATTGAGACAAGAATTGTCGTTGACCAAGAGTGA
AAATTTGAAATTGCACGATTCGATGACATCCCTACAGGACAAGTACCGGA
CCATGTCAACTGAGTATTCCGAAATGAAAGATAGACTAGCGACCATGCAA
AAAGAGAACGCTGAACTCAAAGCCAAACAAGAAGATATGGAGTATGACTT
GCAACGGGCTACCAAACAATTCGAAAAACTAATCAAGAAATTGAACGAGA
CTCACGAACAGGGTTCCAAGTCTAGTGGAGGCAGTAGCGCGGTGAGCGGT
TCTTCGCAACAAGCAGTAAGCAGTGGCGGCGGTGGTGGACACGTGAAGCT
GGTCAAAGATACTCCTGAAGATATTAAAGCAGAGATGGATGCTAAAGACG
AGTTAGCCAACAACCGTCTTGAAGAATTGAAGAAGTTACAAGAACTCTAT
CAAAACCTGCATGTTGAGCACGACAAGTTGAAGCAACAGCTGATGCAACT
TCCAGACGAAGTTATCATCAATCACACGAAATACAAAATGTTGCAAACGC
AATTCAATTTGTGTTACAATGACGCACAAGAGATACGGCGACATTGCGAA
GAAGCACGCAAGATAGTGGTCAACAACAGAAGCCAACACATACAACAACA
AGAACATTACGAGATGGAGATTCAAACACAGCGCAAAAAAGTACGCGCAG
AAATCTCTCAACTTGAGAGAGCGTTGGCTGAATCAAGAAAGGATTTGGAA
TTGCTGAGAGTAGAGTATGAACACAATATGAAAGCCCACGAACAAATTGG
ACCAATGGCTAAAGAAATGAGACATCTCATCAATAGTTTACAGAACCACA
ACCAACAACTGAAAGGAGAAGTATCACGGTACAAAAAGAAGTTGACCGAT
GTTGAAAAGAAACTAGGAGACATTGATAAAACAAAATCGCCTGACAAGGA
GCGCGACATCAGCGATTACATCGATCTCATCGACGCTCCCAACGCACCTA
CGTCCGCTTCTTCATCGCGGTCGGAGTCGAGTCATTCGAGCGATGAAGGG
GACTACGATGACGTCAAAATGTTAAGGACCAAACTGAAGTTAGTACATAT
GGTTTATATTATACCTTTTCATTTTAAGTTTGTTATTTTTGACGAGGACT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003195XLOC_003195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005652-exon-sc0000054-1575043694:456268..456301TCONS_00005652-exon-sc0000054-1575043694:456268..456301Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:453755..453867TCONS_00005652-exon-sc0000054-1575043694:453755..453867Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:452631..452798TCONS_00005652-exon-sc0000054-1575043694:452631..452798Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:452273..452336TCONS_00005652-exon-sc0000054-1575043694:452273..452336Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:451187..451368TCONS_00005652-exon-sc0000054-1575043694:451187..451368Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:450158..450201TCONS_00005652-exon-sc0000054-1575043694:450158..450201Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:449730..449877TCONS_00005652-exon-sc0000054-1575043694:449730..449877Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:448867..449115TCONS_00005652-exon-sc0000054-1575043694:448867..449115Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:448279..448404TCONS_00005652-exon-sc0000054-1575043694:448279..448404Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:447787..447879TCONS_00005652-exon-sc0000054-1575043694:447787..447879Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:447071..447151TCONS_00005652-exon-sc0000054-1575043694:447071..447151Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:445516..445695TCONS_00005652-exon-sc0000054-1575043694:445516..445695Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:444818..444895TCONS_00005652-exon-sc0000054-1575043694:444818..444895Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1575043694:443912..444260TCONS_00005652-exon-sc0000054-1575043694:443912..444260Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:456268..456301TCONS_00005652-exon-sc0000054-1510915933:456268..456301Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:453755..453867TCONS_00005652-exon-sc0000054-1510915933:453755..453867Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:452631..452798TCONS_00005652-exon-sc0000054-1510915933:452631..452798Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:452273..452336TCONS_00005652-exon-sc0000054-1510915933:452273..452336Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:451187..451368TCONS_00005652-exon-sc0000054-1510915933:451187..451368Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:450158..450201TCONS_00005652-exon-sc0000054-1510915933:450158..450201Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:449730..449877TCONS_00005652-exon-sc0000054-1510915933:449730..449877Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:448867..449115TCONS_00005652-exon-sc0000054-1510915933:448867..449115Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:448279..448404TCONS_00005652-exon-sc0000054-1510915933:448279..448404Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:447787..447879TCONS_00005652-exon-sc0000054-1510915933:447787..447879Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:447071..447151TCONS_00005652-exon-sc0000054-1510915933:447071..447151Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:445516..445695TCONS_00005652-exon-sc0000054-1510915933:445516..445695Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:444818..444895TCONS_00005652-exon-sc0000054-1510915933:444818..444895Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1510915933:443912..444260TCONS_00005652-exon-sc0000054-1510915933:443912..444260Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:456268..456301TCONS_00005652-exon-sc0000054-1491911889:456268..456301Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:453755..453867TCONS_00005652-exon-sc0000054-1491911889:453755..453867Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:452631..452798TCONS_00005652-exon-sc0000054-1491911889:452631..452798Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:452273..452336TCONS_00005652-exon-sc0000054-1491911889:452273..452336Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:451187..451368TCONS_00005652-exon-sc0000054-1491911889:451187..451368Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:450158..450201TCONS_00005652-exon-sc0000054-1491911889:450158..450201Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:449730..449877TCONS_00005652-exon-sc0000054-1491911889:449730..449877Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:448867..449115TCONS_00005652-exon-sc0000054-1491911889:448867..449115Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:448279..448404TCONS_00005652-exon-sc0000054-1491911889:448279..448404Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:447787..447879TCONS_00005652-exon-sc0000054-1491911889:447787..447879Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:447071..447151TCONS_00005652-exon-sc0000054-1491911889:447071..447151Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:445516..445695TCONS_00005652-exon-sc0000054-1491911889:445516..445695Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:444818..444895TCONS_00005652-exon-sc0000054-1491911889:444818..444895Clytia hemisphaericaexon
TCONS_00005652-exon-sc0000054-1491911889:443912..444260TCONS_00005652-exon-sc0000054-1491911889:443912..444260Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005652-proteinTCONS_00005652-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:443912..456301 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6144 10.3483 8.80864 3.51921 34.063 27.0573 21.0371 22.4456 7.19644 5.49112 12.154 12.033 17.2905 22.504 10.7853 10.8766 3.70947 7.99242 9.4511 12.04 7.823 5.80474 13.5882 11.3306 24.4452 23.9521 3.78585 5.23241 10.8572 5.90896
Blast
BLAST of TCONS_00005652 vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 5.857e-58
Identity = 164/516 (31.78%), Postives = 274/516 (53.10%), Query Frame = 1
Query:  121 VNLGPISTEEELDLKVVKIQNAKLYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNLLK-----------------RFGDVSEDEALA------------------MSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIERLVVRIEKNMKRNKELIETLKNDXXXXXXXXXXXXXXGDQNDFEDERNDISSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQKENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQXXXXXXXXXXXXXXXXXXXXXXXXXXHVKLVKDTPEDIKAEMDAKDELAXXXXXXXXXXXXXXXXXHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCEEARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLELLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTDVEKKLGDI 1563
            + LG IS+ EE+DLKV++ +N KL  +LE++ A E+E + R  KLE+ +  D   +  +N  W QLD+ V  LL+                 + G   +   L                   +SE  +AF+  L   +++    E+Q R+  S + + R+V   ++  +R +EL + + +               GD      E     + EL           EN +L D  T LQ+K+  +S EYSE++D++ + + +  E++   ED+++D+++  K+ +KL K L E  EQ +     S + SG              + L     E + AE++   ELAN+R+ EL+KLQ   Q     +++LK  L  LP+EV+    +Y+MLQ QF+L YN++ +++   +EAR +++  ++ H++  EH E +    +KK+R E+ QLE  LA+ RK+ E+LR+E+E N+ A+EQ GP+ +EMRHLI+SLQNHN QLKG+  RYK+KL +V+ ++G +
Sbjct:   36 IRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYS--------------RGDSEPL-SEAAQAHTREL---------GRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGG---------QITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKL 518          
The following BLAST results are available for this feature:
BLAST of TCONS_00005652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B5.857e-5831.78E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
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