TCONS_00007057-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007057-protein
Unique NameTCONS_00007057-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007057-protein ID=TCONS_00007057-protein|Name=TCONS_00007057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSAQQQQQNSQSAQQQQAPQQKLSHDVNLNTSLSTSTFQQELQMRVQHEK
EMRLKHEQKQQQQQKMQHQQQAARQQTQLPKQQNTSIQQQQQQQQVLQQH
QMQQQNEQRHQHHPQQNIPPSQQNIPPSQQNIPPSQQNIPPSQQQSMHDQ
HPFQDYQRQQQLQVQQSHHAQQQQMYNQHFLQQQQQLRQQQHLQQRQYNT
TNMSQQQMGAHAQQQSQQMPLSHQQIPMGSAPSNVPGPMGGAPSNVQGMQ
PNQPNSMNPNQQKKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAG
ARENPFPQQGAVITIKLSEEMIPQGEQQVLVEMLFEMNYDTGHWRRLKRT
RVIQQNTPN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007057TCONS_00007057Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..266

Blast
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BLAST of TCONS_00007057-protein vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 4.070e-30
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 0 
Query:  263 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKR 349
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKK 520
The following BLAST results are available for this feature:
BLAST of TCONS_00007057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA4.070e-3065.59Negative elongation factor A OS=Homo sapiens GN=NE... [more]
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