TCONS_00007057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007057
Unique NameTCONS_00007057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007057 ID=TCONS_00007057|Name=TCONS_00007057|organism=Clytia hemisphaerica|type=transcript|length=2442bp
cGAACGTATTCAGAACCCAGTCAACGCGAGTCTCATACCAGGAGAATGTC
TTTATCTGAACCGGACTGCGCTTTCCAAAATCATCTCCAATCCTCCCAAC
CCTTCTAAACATTTCACATTACgaagaaaaccaaaatcagcTGAACTGAG
AGCGAAAATCACGCAAAAAGCGTCTGAAGCAGCCAATCAGCGTCGCTCAA
TGCACTCCAGCAGCATGGGTTCAAAGTCCAGTCTGAAGAGAACACATTCG
GTACCTATGGGAGGAAAACTCCCTCCAGTGCAACACAGTAAAAGTGGAAT
GTCCAAAGCTCGACCAAGGAAAACACAGATTTTGGAATTTGCCGATCAAC
CAATTGGATTGCGCGAGCAAAAGAAACGAAAGAAAATGCAAGTTTTGGAA
GGGCCACCATCGGAAGAGACATCGAAATCAAAGGGTAAGAAACCGCCCAC
CGCCTCTACAACCGCCTCTTCATCGGATAATGTGAAACTAGAAGAAGAGG
AAGAAGTAGAGCAGGAGAAAGATAACAAACAGAATGTTAATTCGATCGAT
CCCACCAGTGGCGGTGAACAGGATTCTGAAGCGAACACACCGCAAGCACA
AGAACCTGATGAGATAGAAGACCTACATGAAGAGGCCGAAGAACAATCAC
CTCACAACAAAAGCGATCAAGAAGATAATCACAACCTCAGTAATGACGAC
GATGACGACGGAAGTANCGTTATACagttttaaccctttaagtgccacgg
taatttttttctaagttttttaaagaaaatcgttagctcaaactttaaag
gcttatatctccggatctagaaggtgttagaagctcgtttatagtccgTT
GAATAGCTTAGCGTCTCCTCTTTCTCTGCTGCGCTGtgcggacctgcctg
aatgatagaaaggtgcccagtggtaaaacttcaatttAATTCGCTGGAGG
ACTGAATCAAGTGAATCACGGCCAAATTCGGAGGTTCTTGgctcactcgt
tgaccaaaaatgggggacgagatggagtttttacaagctcttatttgatt
tggttggtcgttaaccaNACAACAATAATAAACAACACTTGTCGGATGTC
GGCGATCAACGACGTCGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCT
TACGTCACCACCACCTCCCATTGCCGAGCAACACAATCAATACAACATGT
CGGCgcaacagcaacaacaaaacTCACAGTCTGCACAACAACAACAAGCG
CCCCAACAAAAGCTTTCACACGATGTCAATCTTAACACATCGCTATCAAC
AAGTACTTTTCAGCAAGAACTACAGATGCGCGTTCAACATGAGAAAGAGA
TGCGACTGAAACAtgaacaaaaacaacaacaacaacaaaagatgCAACAT
CAGCAACAAGCTGCCCGACAACAAACACAACTTCCTAAACAACAGAACAC
TTCTATtcaacaacaacagcagcagCAGCAGGTGTTACAACAACATCAAA
TGCAACAACAAAACGAACAACGCCATCAACACCACCCTCAACAAAACATC
CCGCCCTCTCAACAAAACATTCCACCGTCTCAACAAAATATTCCACCGTC
TCAACAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATC
CGTTCCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCAT
CAcgctcaacaacaacaaatgtacaaccaacattttcttcaacaacagca
acaactcAGACAACAGCAACACTTACAACAAAGACAATACAACACGACCA
ACATGTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAA
ATGCCTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACGT
TCCAGGGCCGATGGGAGGTGCTCCCTCTAACGTTCAAGGGATGCAACCTA
ATCAACCGAACTCCATGAATCCCAACCAACAGAAGAAAGGACTTTCTCTC
ACGCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGAATAC
CGTGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGTGCTA
GAGAGAATCCATTTCCACAACAAGGTGCAGTGATTACCATCAAGTTGAGT
GAAGAAATGATCCCTCAAGGAGAACAACAAGTTTTGGTTGAAATGTTATT
TGAAATGAACTATGATACCGGTCATTGGCGCAGGTTGAAACGAACTCGTG
TTATTCAACAAAACACTCCAAATTGAGAGTGCAATTGATATTTGTAAATA
ATTCTTTCTTGATAATGGAGAAAAACAGAAACGTTGCTCTAAGATATATA
ACTTTTCGTATAACTTTTCCACGAATTATTCCAGTGAGATGTTTATCAGG
GGGATTAGGGTCAGAATTTTCCGGAAAAATAAATAACTCGGC
Run BLAST on NCBI

protein sequence of TCONS_00007057-protein

>TCONS_00007057-protein ID=TCONS_00007057-protein|Name=TCONS_00007057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSAQQQQQNSQSAQQQQAPQQKLSHDVNLNTSLSTSTFQQELQMRVQHEK
EMRLKHEQKQQQQQKMQHQQQAARQQTQLPKQQNTSIQQQQQQQQVLQQH
QMQQQNEQRHQHHPQQNIPPSQQNIPPSQQNIPPSQQNIPPSQQQSMHDQ
HPFQDYQRQQQLQVQQSHHAQQQQMYNQHFLQQQQQLRQQQHLQQRQYNT
TNMSQQQMGAHAQQQSQQMPLSHQQIPMGSAPSNVPGPMGGAPSNVQGMQ
PNQPNSMNPNQQKKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAG
ARENPFPQQGAVITIKLSEEMIPQGEQQVLVEMLFEMNYDTGHWRRLKRT
RVIQQNTPN
Run BLAST on NCBI

transcript from alignment at sc0000073:54191..63502-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007057 ID=TCONS_00007057|Name=TCONS_00007057|organism=Clytia hemisphaerica|type=transcript|length=9312bp|location=Sequence derived from alignment at sc0000073:54191..63502- (Clytia hemisphaerica)
CGAACGTATTCAGAACCCAGTCAACGCGAGTCTCATACCAGGAGAATGTC
TTTATCTGAACCGGACTGCGCTTTCCAAAATCATCTCCAATCCTCCCAAC
CCTTCTAAACATTTCACATTACGAAGAAAACCAAAATCAGCTGAACTGAG
AGCGAAAATCACGCAAAAAGGTTCGTCAATACAAATTCTGGTATATTGTT
TACCAATCTAACACCAATTTGAACAATTCATGCAAATGATAAAAAGAAAG
ATAATTATTTAAACTAGTGACCCTAAGGACACACAATTTTCTAAATGCTT
CACTCGACCGGACGCACGGACAAACCCCTTATCATTCTTATCGCGGTTAC
TAACTTTATAATACAGCCGAGTCTCCATAACTCGAACCCACACGGGGACC
CACACAAATTTGTTCGAGTTATGGAGTAAGGTATTGTTAACAGAAGGGGC
GAGAAACTTGCTCGAGTTAAGGAGACGTTCAAGTAATAGAGGTTCGAGAC
TCGGCTTATTACGAAATTGTTGATTCAACTTAATTATTTTAGCGTCTGAA
GCAGCCAATCAGCGTCGCTCAATGCACTCCAGCAGCATGGGTTCAAAGTC
CAGTCTGAAGAGAACACATTCGGTACCTATGGGAGGAAAACTCCCTCCAG
TGCAACACAGTAAAAGTGGAATGTCCAAAGCTCGACCAAGGAAAACACAG
GTATTTATCACGTTTTACCTTTTTTGACGTATCTTACGGGGGTTTCTTTT
CTACTATTGTATGCATTATTCAAGATTGAACGTGTTGACGTTACTTTTTC
CTCCCTTTTAGATTTTGGAATTTGCCGATCAACCAATTGGATTGCGCGAG
CAAAAGAAACGAAAGAAAATGCAAGGTAACCTCTTAAACCCAGGGAAATT
GCAACTCTCTTTTTTCCAGAACATTGTTGATGTTACTATGCTCTGGTTTA
GGCCAGACTCTTTAATTAAACTCTCAATTTTCGCAACACCTAATCTGTAA
AAAAAATTTCGAGATTATAAACTTCTTCCGTAGTTTTGGAAGGGCCACCA
TCGGAAGAGACATCGAAATCAAAGGGTAAGAAACCGCCCACCGCCTCTAC
AACCGCCTCTTCATCGGATAATGTGAAACTAGAAGAAGAGGAAGAAGTAG
AGCAGGAGAAAGATAACAAACAGAATGTTAATTCGATCGATCCCACCAGT
GGCGGTGAACAGGTAAATTTGTTTGAAGTTATCATGGTGTTACAATGTTT
GTCATTATGCCGTGTTTTGGAAGTTTGTAAATCATAATAATTGTGGGGTA
GCGCTTTGTTGGAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGGGGTCTACAATTGG
GCCTATGAATAATTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCAC
GTTCGACTATGATAAAAAAGAAGATAATTATTTAAACTAGTGACCCTAAG
GACACACAATTTTCTAATTGCTTCACTCGACCGGACGTACGGACAAACCC
CTTATCATTCTTATCACGGTTACTAACTTTATAATACAGCCGAGTCTCCA
TAACTCGAACCCACACGGGGTACACAAATTTGTTCGAGTTATGGAGTAAG
GTATTGTTAACAGAAGGGACGAGAAACTTGCTCGAGTTAAGGAGACATTC
CAGTTGTAGAGGTTCGAGACTCGGCTTATTACGAAATTGTTGATTCAACT
TAATTATTTTAGCGTCTGAAGCAGCCAATCAGCGTCGCTCAATGCACTCC
AGCAGCATGGGTTCAAAGTCCAGTCTGAAGAGAACACATTCGGTACCTAT
GGGAGGAAAACTCCCTCCAGTGCAACACAGTAAAAGTGGAATGTCCAAAG
CTCGACCAAGGAAAACACAGGTATTTATCACGTTTTACCTTTTTTGACGT
ATCTTACGGGGGTTTCTTTTCTACTTCTTGTATGCATTATTCAAGATTGA
ACGTGTTGACGTTACTTTTTCCTCCCTTTTAGATTTTGGAGTTTGCCGAT
CAACCAATTGGATTGCGCGAGCAAAAGAAACGAAAGAAAATGCAAGGTAA
CCTCTTAAAAACCAGGGAAATTGCAACTCCCTTTCCTCCGCAGAACATTG
TTGATGTTACTATGCTCTGGTTTAGGCCAGACTCTTTAATTAAACTCTTA
ATTTTCGCAACACCTAATCTATAAAAATTTTCGAGATTCTGAACTTCTTC
CGTAGTTTTGGAAGGGCCACCAACGGAAGAGACATCGAAAACAAAGGGTA
AGAAACCGCCCACCGCCTCTACAACCGCCTCTTCATCGGATAATGTGAAA
CTAGAAGAAGAGGAAGAAGTAGAGCAGGAGAAANTTTTTTTTTTGCATTT
TTAGCTTGAAGTCTCTCTGAAAAGACCCACTTTTGATTTTTTGTTTTGCT
TGACTTTGAAGCCCAATCTAATTCCTACGAGTTAGACCAAAAATCATGAT
TTTTAACTCAAACTGGGCATTACAGGAGGGCTTCGAAACTTCTCTTGACT
GAAATCGCCTTNTAATTCGATCGATCCCACCAGTGGCGGTGAACAGGTAA
ATTTGTTTGAAGTTATCATGGTGTTACAATGTTTGTCATTATGCCGTGTT
TTGGAAGTTTGTAAATCATAATAATTGTGNGAATCCTCGTTTTTCTCATC
CCCTTTACTGCACAGGATTCTGAAGCGAACACACCGCAAGCACAAGAACC
TGATGAGATAGAAGACCTACATGAAGAGGCCGAAGAACAATCACCTCACA
ACAAAAGCGATCAAGAAGATAATCACAACCTCAGTAATGACGACGATGAC
GACGGAAGTANCGTTATACAGTTTTAACCCTTTAAGTGCCACGGTAATTT
TTTTCTAAGTTTTTTAAAGAAAATCGTTAGCTCAAACTTTAAAGGCTTAT
ATCTCCGGATCTAGAAGGTGTTAGAAGCTCGTTTATAGTCCGTTGAATAG
CTTAGCGTCTCCTCTTTCTCTGCTGCGCTGTGCGGACCTGCCTGAATGAT
AGAAAGGTGCCCAGTGGTAAAACTTCAATTTAATTCGCTGGAGGACTGAA
TCAAGTGAATCACGGCCAAATTCGGAGGTTCTTGGCTCACTCGTTGACCA
AAAATGGGGGACGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTG
GTCGTTAACCANACAACAATAATAAACAACACTTGTCGGATGTCGGCGAT
CAACGACGTCGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTC
ACCACCACCTCCCATTGCCGAGCAACACAATCAATACAACATGTCGGCGC
AACAGCAACAACAAAACTCACAGTCTGCACAACAACAACAAGCGCCCCAA
CAAAAGCTTTCACACGATGTCAATCTTAACACATCGCTATCAACAAGTAC
TTTTCAGCAAGAACTACAGGTCAGCTTTCTATTGAAGATCATCACCATCA
TCTCAACTACAATCAGCGTCATAAAATTTGATACAAAGGGGGAACTCCCT
CAAAATTTTAAAACCGCAAGTGATTTAAATAAATTACGGTTGGAAAGCAG
ACTTTTAACTCTTACAGCCTGAGGATCTCAGGATTCAAAAGCTCAAAATT
TTTCCAATTAGGCTGGGAGTAAAGCCTAGAAGTCACAAAATCCCTCCAAA
ATCGAAATATTCAATGTAATAAAGTGGAAGTACTTAAAACACAATTCTCA
ACCGACGTTTAAATACTGAAAAACGTTAAAATACACAAAAATCTCAATAT
ATTCGACACCGATTGTGAGGGTCATGCTTTTTTGATTTCTTTTGTACCTC
TTTTCTCATGACTTTATGAAGGTTTATTTTCTCTAGAATAACAAGACTTT
TCTATAAAGTAAAGTTGTTAAACAGCATTGTATTGAAAGTTTGGCATTGA
ATTCGTTTAGCTGACTTTCATTTTTTTTTCTTTTTCGCCAACTCAGATGC
GCGTTCAACATGAGAAAGAGATGCGACTGAAACATGAACAAAAACAACAA
CAACAACAAAAGATGCAACATCAGCAACAAGCTGCCCGACAACAAACACA
ACTTCCTAAACAACAGAACACTTCTATTCAACAACAACAGCAGCAGCAGC
AGGTGTTACAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAA
CACCACCCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTC
TCAACAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATC
CGTTCCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCAT
CACGCTCAACAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCA
ACAACTCAGACAACAGCAACACTTACAACAAAGACAATACAACACGACCA
ACATGTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAA
ATGCCTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACAT
TCCAGGGCCGATGGGAAGTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCA
GCAGCAGGTGTTACAACAACATCAAATGCAACAACAAAACGAACAACGCC
ATCAACACCACCCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCA
CCGTCTCAACAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCA
ACATCCGTTCCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAAT
CTCATCACGCTCAACAACAACAAATGTACAACCAACATTTTCTTCAACAA
CAGCAACAACTCAGACAACAGCAACACTTACAACAAAGACAATACAACAC
GACCAACATGTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGC
AACAAATGCCTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCT
AACATTCCAGGGCCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGAT
GGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTA
ACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATG
GGAGGTGCTCCCTCTAACGTTCAAGGGATGCAACCTAATCAACCGAACTC
CATGAATCCCAACCAACAGAAGAAAGGACTTTCTCTCACGGTAATCTTTA
TTCGCAAAGTTTAGCCTTTCTTTACATATTTACTACTTGTTAGGCTCAAC
CAAGACCACGTCACTCTCGGACTAATAGGGACACTTTCTATTCAACAGCC
ATTCCAGAACAATCCAAGAATGCAGTCACTTCTACTTTGGACAACGTTCT
TAGTCACCAATAGTTTCTGCTGAAATAGCAATTAGACACTTATTCTATCG
CGACTTCGGAAATGTCAGTGTCATTTATGTCAGACACAGTAGCTAGTACC
TTGACCACCAACCGAGTTTTATCCAAACTGTCCAACTCCAATAGGATATC
AGTGGTGCTTGTTGGCGCATGCCTACATTCGCATCAGCCTGCACACATTA
AATTCAGCCTCATCTGGTTAATCTAATGTAGGATCAGACAATTTCCATCT
ACTCTTTTACAGCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATC
AGCGAATACCGTGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGG
CTGGTGCTAGAGGTAAGGCAAACCTTTTGCTCTCACATCCTTCCTTTTTT
TGGGATTTTTATTTCGCAAACTTATTCTAAATCCAGATAAAGTCTGTTCC
AAAAAGTTCCAAAAATATTGGCAGTCCGCACATTTCCATAGGAAAAAAAA
TCGAAATTTGGAGAGTTTGGAAGATAATTTTGAGTGGATGGTTTTAAGGG
TTTAAAAGTTTTAAGAAGAATAAACCAGCCGAGGCTGGAAGGTCAGCCAA
TAGAGCTTAGCTAGATAGCTTTAATAAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAATGAAGATTTTTTCTACTGAACCAAT
ATTCTTAAATTTTACACTTTTCTGAATCTTCGCTGTATTCAGAAGGTGCA
GTGAAAGTCGCGAAAGTTTTTCCCCCTAATGTATTTTCAATCATCAAAGT
TAAAATTCAGGTAAGTTTAAGTCCGGCATATATTCTTTCAAGTAGAAAAA
TCCTCATTCTTTTCTTCTTTTTCGAAAAAATAATCCACTCAAAATTACTC
TACCATTTTCCCTTCATCAACAGTAATGTGTAAAGTGTCAACCGGACATT
CAATGTTTCTGAAACAAGACCTTATTCTCTTCCCTTATTTTTCTGACAAA
TTAAGATATGTTTTCTTCATAAAAGGGTGGATTCAAAGAAGTTACTTTTT
ATGATCAGAGCCATACAACAGGAGTATATGAAATGATCAACCGGATTTCT
TTCTTTCTTTTTCTGTACACCAGAGAATCCATTTCCACAACAAGGTGCAG
TGATTACCATCAAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAA
GTTTTGGTTGAAATGTTATTTGAAATGAACTATGATACCGGTCATTGGCG
CAGGTTGAAACGAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGT
GCAATTGATATTTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAA
ACGTTGCTCTAAGATATATAACTTTTCGTATAACTTTTCCACGAATTATT
CCAGTGAGATGTTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAAT
AAATAACTCGGC

Coding sequence (CDS) from alignment at sc0000073:54191..63502-

>TCONS_00007057 ID=TCONS_00007057|Name=TCONS_00007057|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000073:54191..63502- (Clytia hemisphaerica)
ATGTCGGCGCAACAGCAACAACAAAACTCACAGTCTGCACAACAACAACA
AGCGCCCCAACAAAAGCTTTCACACGATGTCAATCTTAACACATCGCTAT
CAACAAGTACTTTTCAGCAAGAACTACAGATGCGCGTTCAACATGAGAAA
GAGATGCGACTGAAACATGAACAAAAACAACAACAACAACAAAAGATGCA
ACATCAGCAACAAGCTGCCCGACAACAAACACAACTTCCTAAACAACAGA
ACACTTCTATTCAACAACAACAGCAGCAGCAGCAGGTGTTACAACAACAT
CAAATGCAACAACAAAACGAACAACGCCATCAACACCACCCTCAACAAAA
CATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAACAAAATATTCCAC
CGTCTCAACAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCAA
CATCCGTTCCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATC
TCATCACGCTCAACAACAACAAATGTACAACCAACATTTTCTTCAACAAC
AGCAACAACTCAGACAACAGCAACACTTACAACAAAGACAATACAACACG
ACCAACATGTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCA
ACAAATGCCTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTA
ACGTTCCAGGGCCGATGGGAGGTGCTCCCTCTAACGTTCAAGGGATGCAA
CCTAATCAACCGAACTCCATGAATCCCAACCAACAGAAGAAAGGACTTTC
TCTCACGCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGA
ATACCGTGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGT
GCTAGAGAGAATCCATTTCCACAACAAGGTGCAGTGATTACCATCAAGTT
GAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGTTTTGGTTGAAATGT
TATTTGAAATGAACTATGATACCGGTCATTGGCGCAGGTTGAAACGAACT
CGTGTTATTCAACAAAACACTCCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007057-proteinTCONS_00007057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007057-exon-sc0000073-1575043694:63333..63502TCONS_00007057-exon-sc0000073-1575043694:63333..63502Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:62803..62960TCONS_00007057-exon-sc0000073-1575043694:62803..62960Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:62628..62691TCONS_00007057-exon-sc0000073-1575043694:62628..62691Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:62291..62469TCONS_00007057-exon-sc0000073-1575043694:62291..62469Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:60034..60787TCONS_00007057-exon-sc0000073-1575043694:60034..60787Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:59243..59506TCONS_00007057-exon-sc0000073-1575043694:59243..59506Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:57900..58208TCONS_00007057-exon-sc0000073-1575043694:57900..58208Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:57663..57767TCONS_00007057-exon-sc0000073-1575043694:57663..57767Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:57141..57240TCONS_00007057-exon-sc0000073-1575043694:57141..57240Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1575043694:54191..54529TCONS_00007057-exon-sc0000073-1575043694:54191..54529Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:63333..63502TCONS_00007057-exon-sc0000073-1510915933:63333..63502Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:62803..62960TCONS_00007057-exon-sc0000073-1510915933:62803..62960Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:62628..62691TCONS_00007057-exon-sc0000073-1510915933:62628..62691Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:62291..62469TCONS_00007057-exon-sc0000073-1510915933:62291..62469Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:60034..60787TCONS_00007057-exon-sc0000073-1510915933:60034..60787Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:59243..59506TCONS_00007057-exon-sc0000073-1510915933:59243..59506Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:57900..58208TCONS_00007057-exon-sc0000073-1510915933:57900..58208Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:57663..57767TCONS_00007057-exon-sc0000073-1510915933:57663..57767Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:57141..57240TCONS_00007057-exon-sc0000073-1510915933:57141..57240Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1510915933:54191..54529TCONS_00007057-exon-sc0000073-1510915933:54191..54529Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:63333..63502TCONS_00007057-exon-sc0000073-1491911889:63333..63502Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:62803..62960TCONS_00007057-exon-sc0000073-1491911889:62803..62960Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:62628..62691TCONS_00007057-exon-sc0000073-1491911889:62628..62691Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:62291..62469TCONS_00007057-exon-sc0000073-1491911889:62291..62469Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:60034..60787TCONS_00007057-exon-sc0000073-1491911889:60034..60787Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:59243..59506TCONS_00007057-exon-sc0000073-1491911889:59243..59506Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:57900..58208TCONS_00007057-exon-sc0000073-1491911889:57900..58208Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:57663..57767TCONS_00007057-exon-sc0000073-1491911889:57663..57767Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:57141..57240TCONS_00007057-exon-sc0000073-1491911889:57141..57240Clytia hemisphaericaexon
TCONS_00007057-exon-sc0000073-1491911889:54191..54529TCONS_00007057-exon-sc0000073-1491911889:54191..54529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:54191..63502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00638934	2.25947e-05	0	0	1.35742e-05	0.00419715	0	0	0	0	0	6.03522e-05	0	3.90417e-09	0.839742	0	0	4.53594e-07	0	0.0157878	1.02544e-05	0.93974	4.88782e-06	0.0426566	0	1.64011e-09	0	0.899798	0.21716	0.00392722
Blast
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BLAST of TCONS_00007057 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.144e-27
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 3 
Query: 1983 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKRTR 2249
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+ +
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYK 522
The following BLAST results are available for this feature:
BLAST of TCONS_00007057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA1.144e-2764.21Negative elongation factor A OS=Homo sapiens GN=NE... [more]
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