TCONS_00007072-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007072-protein
Unique NameTCONS_00007072-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007072-protein ID=TCONS_00007072-protein|Name=TCONS_00007072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
ILIHNYCLLINFRVPGESKVCSGQGVCDCGECKCNKPETLNNGYVKYYYG
TKCECDNASCLTFEDMICGGPERGKCDCGVCKCNPQWIGKTCEQECSPAQ
DQCFNPNDPSQTLCSGSGDCRCNQCQCDEGAFGKYCEECVDEGCPDACRD
YGECVKCSVFETSDLTPDECEIECRDKWNITRHVVVDDVEDFVPPNQKQC
LGRDEDDCAFIFTYQRDNITNEVTLFVQRDRICPAEPDILAIILGVIAGI
VGIGLALLLIWKLLATIQDRREFAKFEKDLQNPKWDSGENPIYKKATSTF
QNPMYGDKGAETAAQPNAPLIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003957XLOC_003957Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007072TCONS_00007072Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
IPR013111EGF_extracell
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 289..299
score: 64.65
coord: 237..254
score: 52.47
coord: 114..127
score: 62.7
coord: 254..272
score: 70.57
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 114..127
IPR012896Integrin beta subunit, tailSMARTSM01242Integrin_B_tail_2coord: 148..238
e-value: 1.6E-17
score: 74.2
IPR012896Integrin beta subunit, tailPFAMPF07965Integrin_B_tailcoord: 148..237
e-value: 4.2E-15
score: 55.9
IPR012896Integrin beta subunit, tailSUPERFAMILY69687Integrin beta tail domaincoord: 146..234
IPR014836Integrin beta subunit, cytoplasmic domainSMARTSM01241Integrin_b_cyt_2coord: 262..308
e-value: 3.2E-24
score: 96.5
IPR014836Integrin beta subunit, cytoplasmic domainPFAMPF08725Integrin_b_cytcoord: 262..306
e-value: 2.4E-22
score: 78.2
IPR014836Integrin beta subunit, cytoplasmic domainGENE3D1.20.5.630coord: 268..306
e-value: 2.9E-23
score: 80.8
NoneNo IPR availableGENE3D2.60.40.1510coord: 47..93
e-value: 2.1E-6
score: 27.6
NoneNo IPR availableGENE3D2.10.25.10coord: 12..46
e-value: 7.2E-7
score: 28.9
coord: 102..140
e-value: 1.5E-7
score: 31.1
NoneNo IPR availableGENE3D1.20.5.100coord: 233..267
e-value: 2.2E-20
score: 71.6
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 54..93
IPR013111EGF-like domain, extracellularPFAMPF07974EGF_2coord: 65..92
e-value: 1.2E-4
score: 22.3

Blast
[Close]
BLAST of TCONS_00007072-protein vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 8.735e-54
Identity = 133/298 (44.63%), Postives = 166/298 (55.70%), Query Frame = 0 
Query:   13 RVPGESKVCSGQGVCDCGECKCNKPETLNNGYVKYYYGTKCECDNASCLTFEDMICGGPERGKCDCGVCKCNPQWIGKTCEQECSPAQDQCFNPNDPSQTLCSGSGDCRCNQCQCDEGAF-GKYCEECVDEGCPDACRDYGECVKCSVFETSDLTPDECEIECRDKWNITRHVVVDDVEDFVPPNQ-KQCLGRDEDDCAFIFTYQRDNITNEVTLFVQRDRICPAEPDILAIILGVIAGIVGIGLALLLIWKLLATIQDRREFAKFEKDLQNPKWDSGENPIYKKATSTFQNPMYGDK 308
            R    S++CS  G C CG+C C K +  N    + Y G  CECDN +C     +ICGG   G C C VC+CNP + G  C+  CS     C   N     +C+G G C C  C+C +  F G+ CE C  + C   C ++ ECV+C  F   +   D C  EC   +NIT+    D +   V P+    C  +D DDC F FTY   N  NEV + V  +  CP  PDI+ I+ GV+AGIV IGLALLLIWKLL  I DRREFAKFEK+  N KWD+GENPIYK A +T  NP Y  K
Sbjct:  517 RKENSSEICSNNGECVCGQCVCRKRDNTN----EIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSACD--CSLDTSTCEASNG---QICNGRGICECGVCKCTDPKFQGQTCEMC--QTCLGVCAEHKECVQCRAFNKGE-KKDTCTQEC-SYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCWFYFTYSV-NGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEGK 798
The following BLAST results are available for this feature:
BLAST of TCONS_00007072-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB18.735e-5444.63Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2[more]
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