TCONS_00007072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007072
Unique NameTCONS_00007072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007072 ID=TCONS_00007072|Name=TCONS_00007072|organism=Clytia hemisphaerica|type=transcript|length=2132bp
acattttaattcacaattattgtcttttgataaatttcagagTTCCCGGT
GAAAGTAAAGTTTGTTCCGGACAAGGTGTTTGTGATTGTGGAGAATGCAA
GTGTAATAAACCAGAGACATTGAATAACGGGTACGTGAAATATTACTACG
GTACGAAATGTGAATGCGACAACGCTTCATGTTTAACGTTCGAAGATATG
ATTTGCGGCGGACCGGAACGAGGGAAATGTGATTGTGGTGTGTGCAAATG
TAACCCTCAATGGATAGGAAAAACGTGTGAACAAGAATGTTCCCCTGCTC
AAGATCAGTGCTTCAATCCAAATGACCCATCTCAGacgTTGTGTTCGGGA
TCAGGAGATTGTCGATGTAACCAATGTCAATGTGACGAAGGAGCTTTTGG
AAAATATTGTGAAGAATGCGTTGATGAAGGATGTCCTGACGCATGTCGTG
ATTATGGGGAGTGCGTCAAATGCAGCGTCTTCGAGACGAGCGATCTAACA
CCGGATGAATGCGAAATTGAATGCCGAGACAAATGGAATATCACCAGACA
CGTGGTCGTTGATGACGTTGAAGattttgttcCACCAAACCAGAAGCAAT
GTTTGGGACGTGATGAAGATGATTGTGCTTTCATTTTCACCTACCAACGA
GATAATATCACCAATGAAGTGACCTTGTTTGTCCAAAGAGACAGAATTTG
TCCAGCGGAACCTGATATTCTTGCCATCATTCTTGGTGTTATCGCTGGTA
TCGTGGGAATCGGTTTAGCTCTGTTGTTGATCTGGAAGTTGTTGGCCACC
ATCCAGGATCGTAGGGAATTCGCCAAATTTGAAAAGGATCTTCAAAATCC
AAAATGGGATTCGGGAGAAAATCCGATTTACAAGAAGGCCACTTCAACGT
TCCAAAATCCAATGTATGGCGATAAAGGTGCCGAAACTGCTGCTCAACCC
AATGCCCCTCTGATCGAATGAGAGCGCACTGAGAATATTTGAAGAAGTTT
GACACAATAACAACAAGTTCGAGATTGGAGTAGTGGCCTCACATCCTTGG
GTTACTCAAAAGAATGTGTTACTGGATCTTTGGTCAGTGTATCCATGGAG
GAGCGTGGCTGGCCAATAGGTTCTTTTGTAGATGGCAGCAGATTTAGAAT
TTAGAATGGCATTTTTTCGAATTGCAATGAACATTTATAAGAAAGTCCAA
tttaaacaaatctttattTTCAGTTATTTATTGGTCCTTGTACAGAACAC
AGGGTGGCTCTGAAAGGCGCCCTCGGGATGGAATGATTAACCTAGGGTGT
CTTTTGGAAGCCTTGTGTCTGTGTGAGTGATTATCTTGTACAGCGCAcac
tttttaaagaaatatttctacATAGTATTTTGTTGTcccttatgtttttt
ttctttattaacattattttttattattttgtattataaactaaaatttt
ttgtgtttgtttttttatcctTGTTTTTTTTCCTGTTCATTTAAATAACT
gtattttgaatcttttttatttgcttttaactttttagaaaaatattttt
ctggcgcAAAACTCAGCCAGATGCCTAGTTTTTTAGAccatttctaattt
tcttaccatattgaattttcttttccctattatcaaaatcaatttccttt
taaaaattgtatttctttatttgtaaaaaaataaatacattttttattta
tgatacgtcaaaaatatattgctatattCATATTGCTTAGGGTAGACCCT
TGTTATTCACGAGATTAATTTCAATTCCCAAGAGCTCTTTGGCTTTGCTT
ACGgttttgaaaagatttaaaaaaatatggaGGAGATCAGAACAACCTCC
TTTCCTTTAAATTTGTCATAGCAcgagaaaaagtttgttttgcaAAGAAA
TTACTTGACTTGTGTCTCTCACTAAAATAATCTCtcaaaggctttaaaaa
aagACTAAAACCTAGTGCATTTACaattattacttttttattatgttact
ttttgttatttttattttagcatGTAAATTTGTTCGCATTTTTAGAAATT
GAATGCTAGAAATGAAATCCATATTTTAGGCTCTTCTTCAATTCTTGTTT
TTCGAAGTCTCATTTTGAAGACAAGATTCTGC
Run BLAST on NCBI

protein sequence of TCONS_00007072-protein

>TCONS_00007072-protein ID=TCONS_00007072-protein|Name=TCONS_00007072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
ILIHNYCLLINFRVPGESKVCSGQGVCDCGECKCNKPETLNNGYVKYYYG
TKCECDNASCLTFEDMICGGPERGKCDCGVCKCNPQWIGKTCEQECSPAQ
DQCFNPNDPSQTLCSGSGDCRCNQCQCDEGAFGKYCEECVDEGCPDACRD
YGECVKCSVFETSDLTPDECEIECRDKWNITRHVVVDDVEDFVPPNQKQC
LGRDEDDCAFIFTYQRDNITNEVTLFVQRDRICPAEPDILAIILGVIAGI
VGIGLALLLIWKLLATIQDRREFAKFEKDLQNPKWDSGENPIYKKATSTF
QNPMYGDKGAETAAQPNAPLIE
Run BLAST on NCBI

transcript from alignment at sc0000073:446010..451412-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007072 ID=TCONS_00007072|Name=TCONS_00007072|organism=Clytia hemisphaerica|type=transcript|length=5403bp|location=Sequence derived from alignment at sc0000073:446010..451412- (Clytia hemisphaerica)
ACATTTTAATTCACAATTATTGTCTTTTGATAAATTTCAGAGTTCCCGGT
GAAAGTAAAGTTTGTTCCGGACAAGGTGTTTGTGATTGTGGAGAATGCAA
GTGTAATAAACCAGAGGTAACCAGTTGTCGTGTATTGAAATAAATCCTTT
CTCTGTTCAATCCTAAATCCCCCATGTGTTTTATTATACCCAATTCTTTG
AAGAAGATGTTCTATGCAGTGAAGTCTCCATAACTCGAACACGCACGGGG
AACACAAATTCATGGAGTAAGGTTTTTTAGGCTTTGTTAACTGAATGGAC
GATAAAAATTGTTCGAGTTAAGGAGATATTCGAGTTGTAATGGTTCGAGT
TAAAAAGACTTTACTGCAGTACTTGTGTTTCACAACGAAGACAAACTTAA
TATGTTTGGCAAGCTTCTGTTTGGAAGCGGTTTTAAACTGACATGCATTA
TATTTTATTTCAAATTTCTATTTTCATTCCCAAATGTTTTGTATGCTTCT
AACTCATACCTTAAGGAAACTAATTTTCGCAGTAACTCGTTTTTGCGGTT
AACACCCACTTTTTGCCGAAATTCTTTGATATTCGTAGGGTTTTTGAGGA
TTTTTAGCAAAAATACCATTTCGCCGAACTAATTTTCGCAGTAACTCGTT
TTTGCGGTTAACACCCACTTTTTGCCGAAATTCTTTGATATTCGTAGGGT
TTTTGAGGATTTTTAGCAAAAATACCATTTCGCGGAACTAATTTTCGTAG
TAGACACCCAAAAACGCAAAAATTAGTTCTCTTAATAACTTTATCATTAA
ACAAGTTATTACCATTTTACTTCTCTTCAATTTCCAGACATTGAATAACG
GGTACGTGAAATATTACTACGGTACGAAATGTGAATGCGACAACGCTTCA
TGTTTAACGTTCGAAGATATGATTTGCGGCGGACCGGAACGAGGGAAATG
TGATTGTGGTGTGTGCAAATGTAACCCTCAATGGATAGGAAAAACGTGTG
AACAAGAATGTTCCCCTGCTCAAGATCAGTGCTTCAATCCAAATGACCCA
TCTCAGGTTTGAAGCTCTTTTTAAGGGTTTCTTATTTTTTACCGTTTTTT
TCACTGTCGCAAGACAAGTGGAGGTATCAAAAAAATTAATGTCATTGTTT
TTTTTTTCGATAAACGTTTCTTTAGCAAAAACAATAAGGTTATAAGGTTA
TAAGGTCAAGAGGCTGAAGAAATTCGGCCTAAATTAAGGACAATCCGTGC
CTGAAAATACTGGTTGAAGGGCATTGTAAGTATTTAAGGTTGTAAATAAA
CTAAGAGAATCTCAATATTTTCAATTTTTCAGACGTTGTGTTCGGGATCA
GGAGATTGTCGATGTAACCAATGTCAATGTGACGAAGGAGCTTTTGGAAA
ATATTGTGAAGAATGCGTTGATGTAAGTATGATCAACTTCCTAACAATGA
AGTATAGGATTAAGGCTACAAACGAATCTTCTATGTAGGCTTTGAAGCGA
TCTTTGTTTTCTACCCTCGTTGTGCGGCCTGAGTGGTTTTCACAGAAACT
AATCGAAAGGACATAATATTTACCGATTACGGGATATGCGCTCGAATAGT
TTTCTAGCCATCGGTTTTTACTTCATAGCTTCTGACATCTCAGTGTTTGT
GGCTAAGTAGTCACCAGTTCTTTTGGTGTACAGAAAGTAGAATTGAAACG
TAAAGGTTTCCCAGCCAATAAGTGTATCTTTGAAAAAAAAACATGGAGGT
CACCATGTTTTTTAAGTAAAAAATCTACTCTTAAAGAATCTTTGGAATTA
AATTTCTATTGATAATAAAAAGGAAGATTCATCTCATTTTTCTAAATTCA
GTAAGACGAATTATTTTGTAGATTGTTCTGTCGTGTTTTACCGACCGGGC
ACGCTATATAATGGTCCCCGACTCTTGATTAAAGTTTGATTATGTATTCG
CTCGGATCCTTTTTGTAGGAAGGATGTCCTGACGCATGTCGTGATTATGG
GGAGTGCGTCAAATGCAGCGTCTTCGAGACGAGCGATCTAACACCGGATG
AATGCGAAATTGAATGCCGAGACAAATGGAATATCACCAGACACGTGGTC
GTTGATGACGTTGAAGGTACCCAACTCGATTCGATTCAAAGTCTTGAAAT
TTCATCTTTGTTAGGGTATTCATTAACTTGCGAACGCTCCGTTCGTACTA
AGTAGTGCCCGCCCCTATGAGTGAATAAAAAATCAAATAATTTCATTGGT
CAGTCTTACTAGTTTGTCCAACATTGAAAATTAAAATAGCCAAAGTCTCG
TCAAGCGAGATTTTTTTTAGAAAAACGTATTTCTTTCAGCATACAAAAAA
AATTGAAGTAGCTATACATATGAATACTGCGCTAGCAATAGAGACCTTTA
TTAAGAATATAGTATTGAAAATGAATTATTTTATCAACATTTTATTGGTT
TAGCTGCATTCCGTTTTGCTTATTTTGGCTAACATTACACTTACAAGTTG
AATTTACCCAACAACTAGTTTAAAAACCGTTAAAAAGAGCTCGTCCACCA
ATATGTAATTTCGAGATGAATGTGGCTCATTATCTTTAATATTTTCATCT
GATTATATTTCTCTTTGATTTTTTAGATTTTGTTCCACCAAACCAGAAGC
AATGTTTGGGACGTGATGAAGATGATTGTGCTTTCATTTTCACCTACCAA
CGAGATAATATCACCAATGAAGTGACCTTGTTTGTCCAAAGAGACAGAAG
TAAGGGCTGAAACCTTAGCTTCTAAAGTGAAAGTTTTAGAATGTACTTAT
TTCTCAGTACTCGGCACTTTAGACCCGTGGCTCGAGAAGTAGTCAGCCAG
ATAAGATTCTACGACATGATATTTTTCTTTTACCAAGAATACCAAAGTCG
GTCTTGTAACCCTTCACTTTCGTTACAATAACACTAATGATTTTTTAAAT
CAACCAACACCGGCAAAATTTTGTTTTTGACAAAATATCTTGATCTTATA
AGATCATCCTAAGGTCTAAAATTAAGACAAAAAACAAAGAATTGGAAATC
CCCCCTCTCACAAAATTTCTGACTATATATTGCTTTACTCGCGAAAATGC
AATGAATGTTATAAAAAATTTTCTTTAAGAAATACAACAAAATCTTAACA
CTCTGTTTACTTTGATTACAGTTTGTCCAGCGGAACCTGATATTCTTGCC
ATCATTCTTGGTGTTATCGCTGGTATCGTGGGAATCGGTTTAGCTCTGTT
GTTGATCTGGAAGTTGTTGGCCACCATCCAGGTTTGTAAAAGCTCCCTCT
CTCTCTCTCGTTAGAATGCAAAATTTTATAGGAATTAATAAACTAACCTC
TTTCACAAAGTTACTGATTGTATTGGGTTATTATGCGAAGCTACGATGAA
TTTTACATGATTTTCCTTAAAAAATACAACGCATTCTCGATTTTCCTTCG
GAAATACAAATTATTTTATAACGGTTTTCTTGAAGAAATATTGATAATAT
GGCTGGACGGATTTTCCTTGGTAAATACAAATCTTTTGAGAAAACATAAT
ATTTTTTTTCTTCCAACATCAGGATCGTAGGGAATTCGCCAAATTTGAAA
AGGATCTTCAAAATCCAAAATGGGATTCGGTAAGTCTCCTTGTCGAAAAT
CATTGTTTTTTATCAGATGAATTCACTTCCACAAACACCAACACCTCATC
CACCCTTAGGATTTCCCTCCTGGGAATGTAGATTCCTGGAAACTGAGAAA
TTTCGTGACTTGATTTAGTATAGCTTACACATTCTTTCAGATTCTCTGAT
AGAGTCAATTCATGACATGAACCACTGGAGAGTCTTCTGAGAACTGAAAA
TTTCCACCCAATTCATGATATGCACCACTGGAGAGTCTTCTGAGCACTGA
AAATTTCCACCCAATTCATGATATGCAGCACTGGAGAGTCTTCTGAGAAC
TTTTAAAATTTTCCACCCAATACGTCACTTAAACAACAGAAAAAGTGACG
TATTGGGTGGAATAAAAACCGAAAAGTTGCATAATTTCGTGAAGTCAATA
TAGTGGTGCATATCATGAATTTACAGATTCAGATATAGCCTAGTTTACTA
GTCGCTTCCTCATTTAACGATATCTGTTTCACAGGGAGAAAATCCGATTT
ACAAGAAGGCCACTTCAACGTTCCAAAATCCAATGTATGGCGATAAAGGT
GCCGAAACTGCTGCTCAACCCAATGCCCCTCTGATCGAATGAGAGCGCAC
TGAGAATATTTGAAGAAGTTTGACACAATAACAACAAGTTCGAGATTGGA
GTAGTGGCCTCACATCCTTGGGTTACTCAAAAGAATGTGTTACTGGATCT
TTGGTCAGTGTATCCATGGAGGAGCGTGGCTGGCCAATAGGTTCTTTTGT
AGATGGCAGCAGATTTAGAATTTAGAATGGCATTTTTTCGAATTGCAATG
AACATTTATAAGAAAGTCCAATTTAAACAAATCTTTATTTTCAGTTATTT
ATTGGTCCTTGTACAGAACACAGGGTGGCTCTGAAAGGCGCCCTCGGGAT
GGAATGATTAACCTAGGGTGTCTTTTGGAAGCCTTGTGTCTGTGTGAGTG
ATTATCTTGTACAGCGCACACTTTTTAAAGAAATATTTCTACATAGTATT
TTGTTGTCCCTTATGTTTTTTTTCTTTATTAACATTATTTTTTATTATTT
TGTATTATAAACTAAAATTTTTTGTGTTTGTTTTTTTATCCTTGTTTTTT
TTCCTGTTCATTTAAATAACTGTATTTTGAATCTTTTTTATTTGCTTTTA
ACTTTTTAGAAAAATATTTTTCTGGCGCAAAACTCAGCCAGATGCCTAGT
TTTTTAGACCATTTCTAATTTTCTTACCATATTGAATTTTCTTTTCCCTA
TTATCAAAATCAATTTCCTTTTAAAAATTGTATTTCTTTATTTGTAAAAA
AATAAATACATTTTTTATTTATGATACGTCAAAAATATATTGCTATATTC
ATATTGCTTAGGGTAGACCCTTGTTATTCACGAGATTAATTTCAATTCCC
AAGAGCTCTTTGGCTTTGCTTACGGTTTTGAAAAGATTTAAAAAAATATG
GAGGAGATCAGAACAACCTCCTTTCCTTTAAATTTGTCATAGCACGAGAA
AAAGTTTGTTTTGCAAAGAAATTACTTGACTTGTGTCTCTCACTAAAATA
ATCTCTCAAAGGCTTTAAAAAAAGACTAAAACCTAGTGCATTTACAATTA
TTACTTTTTTATTATGTTACTTTTTGTTATTTTTATTTTAGCATGTAAAT
TTGTTCGCATTTTTAGAAATTGAATGCTAGAAATGAAATCCATATTTTAG
GCTCTTCTTCAATTCTTGTTTTTCGAAGTCTCATTTTGAAGACAAGATTC
TGC

Coding sequence (CDS) from alignment at sc0000073:446010..451412-

>TCONS_00007072 ID=TCONS_00007072|Name=TCONS_00007072|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000073:446010..451412- (Clytia hemisphaerica)
ATTTTAATTCACAATTATTGTCTTTTGATAAATTTCAGAGTTCCCGGTGA
AAGTAAAGTTTGTTCCGGACAAGGTGTTTGTGATTGTGGAGAATGCAAGT
GTAATAAACCAGAGACATTGAATAACGGGTACGTGAAATATTACTACGGT
ACGAAATGTGAATGCGACAACGCTTCATGTTTAACGTTCGAAGATATGAT
TTGCGGCGGACCGGAACGAGGGAAATGTGATTGTGGTGTGTGCAAATGTA
ACCCTCAATGGATAGGAAAAACGTGTGAACAAGAATGTTCCCCTGCTCAA
GATCAGTGCTTCAATCCAAATGACCCATCTCAGACGTTGTGTTCGGGATC
AGGAGATTGTCGATGTAACCAATGTCAATGTGACGAAGGAGCTTTTGGAA
AATATTGTGAAGAATGCGTTGATGAAGGATGTCCTGACGCATGTCGTGAT
TATGGGGAGTGCGTCAAATGCAGCGTCTTCGAGACGAGCGATCTAACACC
GGATGAATGCGAAATTGAATGCCGAGACAAATGGAATATCACCAGACACG
TGGTCGTTGATGACGTTGAAGATTTTGTTCCACCAAACCAGAAGCAATGT
TTGGGACGTGATGAAGATGATTGTGCTTTCATTTTCACCTACCAACGAGA
TAATATCACCAATGAAGTGACCTTGTTTGTCCAAAGAGACAGAATTTGTC
CAGCGGAACCTGATATTCTTGCCATCATTCTTGGTGTTATCGCTGGTATC
GTGGGAATCGGTTTAGCTCTGTTGTTGATCTGGAAGTTGTTGGCCACCAT
CCAGGATCGTAGGGAATTCGCCAAATTTGAAAAGGATCTTCAAAATCCAA
AATGGGATTCGGGAGAAAATCCGATTTACAAGAAGGCCACTTCAACGTTC
CAAAATCCAATGTATGGCGATAAAGGTGCCGAAACTGCTGCTCAACCCAA
TGCCCCTCTGATCGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003957XLOC_003957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007072-exon-sc0000073-1575043694:451297..451412TCONS_00007072-exon-sc0000073-1575043694:451297..451412Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:450357..450575TCONS_00007072-exon-sc0000073-1575043694:450357..450575Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:449991..450080TCONS_00007072-exon-sc0000073-1575043694:449991..450080Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:449297..449444TCONS_00007072-exon-sc0000073-1575043694:449297..449444Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:448664..448786TCONS_00007072-exon-sc0000073-1575043694:448664..448786Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:448132..448241TCONS_00007072-exon-sc0000073-1575043694:448132..448241Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:447784..447840TCONS_00007072-exon-sc0000073-1575043694:447784..447840Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1575043694:446010..447278TCONS_00007072-exon-sc0000073-1575043694:446010..447278Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:451297..451412TCONS_00007072-exon-sc0000073-1510915933:451297..451412Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:450357..450575TCONS_00007072-exon-sc0000073-1510915933:450357..450575Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:449991..450080TCONS_00007072-exon-sc0000073-1510915933:449991..450080Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:449297..449444TCONS_00007072-exon-sc0000073-1510915933:449297..449444Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:448664..448786TCONS_00007072-exon-sc0000073-1510915933:448664..448786Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:448132..448241TCONS_00007072-exon-sc0000073-1510915933:448132..448241Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:447784..447840TCONS_00007072-exon-sc0000073-1510915933:447784..447840Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1510915933:446010..447278TCONS_00007072-exon-sc0000073-1510915933:446010..447278Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:451297..451412TCONS_00007072-exon-sc0000073-1491911889:451297..451412Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:450357..450575TCONS_00007072-exon-sc0000073-1491911889:450357..450575Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:449991..450080TCONS_00007072-exon-sc0000073-1491911889:449991..450080Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:449297..449444TCONS_00007072-exon-sc0000073-1491911889:449297..449444Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:448664..448786TCONS_00007072-exon-sc0000073-1491911889:448664..448786Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:448132..448241TCONS_00007072-exon-sc0000073-1491911889:448132..448241Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:447784..447840TCONS_00007072-exon-sc0000073-1491911889:447784..447840Clytia hemisphaericaexon
TCONS_00007072-exon-sc0000073-1491911889:446010..447278TCONS_00007072-exon-sc0000073-1491911889:446010..447278Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007072-proteinTCONS_00007072-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:446010..451412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.81523	4.1199	3.02892	2.82027	129.375	99.1665	99.3602	107.165	68.67	81.9007	59.8501	49.8485	84.5155	83.2848	50.8717	50.3884	83.403	96.4869	89.0967	89.3546	57.8833	59.1989	35.8339	46.3865	53.1054	59.9115	74.9817	52.2954	41.8143	43.6662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR012896Integrin_bsu_tail
IPR014836Integrin_bsu_cyt_dom
IPR013111EGF_extracell
Blast
[Close]
BLAST of TCONS_00007072 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.199e-39
Identity = 133/298 (44.63%), Postives = 166/298 (55.70%), Query Frame = 3 
Query:   39 RVPGESKVCSGQGVCDCGECKCNKPETLNNGYVKYYYGTKCECDNASCLTFEDMICGGPERGKCDCGVCKCNPQWIGKTCEQECSPAQDQCFNPNDPSQTLCSGSGDCRCNQCQCDEGAF-GKYCEECVDEGCPDACRDYGECVKCSVFETSDLTPDECEIECRDKWNITRHXXXXXXXXXXPPN-QKQCLGRDEDDCAFIFTYQRDNITNEVTLFVQRDRICPAEPDXXXXXXXXXXXXXXXXXXXXXXXXXXXTIQDRREFAKFEKDLQNPKWDSGENPIYKKATSTFQNPMYGDK 926
            R    S++CS  G C CG+C C K +  N    + Y G  CECDN +C     +ICGG   G C C VC+CNP + G  C+  CS     C   N     +C+G G C C  C+C +  F G+ CE C  + C   C ++ ECV+C  F   +   D C  EC   +NIT+    D +   V P+    C  +D DDC F FTY   N  NEV + V  +  CP  PDI+ I+ GV+AGIV IGLALLLIWKLL  I DRREFAKFEK+  N KWD+GENPIYK A +T  NP Y  K
Sbjct:  517 RKENSSEICSNNGECVCGQCVCRKRDNTN----EIYSGKFCECDNFNCDRSNGLICGG--NGVCKCRVCECNPNYTGSACD--CSLDTSTCEASNG---QICNGRGICECGVCKCTDPKFQGQTCEMC--QTCLGVCAEHKECVQCRAFNKGE-KKDTCTQEC-SYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCWFYFTYSV-NGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVTTVVNPKYEGK 798
The following BLAST results are available for this feature:
BLAST of TCONS_00007072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB16.199e-3944.63Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2[more]
back to top