TCONS_00007161-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007161-protein
Unique NameTCONS_00007161-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007161-protein ID=TCONS_00007161-protein|Name=TCONS_00007161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MRVQQPNVCSNIFSYVNLRQETTSTRISDDFKSSFSALRLPEAMRENELA
FGEYDKIFAAEWLNEDHIICGTKCNNLIVQNITSQSKWEIPLMKGSGHIP
IPDKNCGIHSISKNENNTKLATGALNPNSIGFYRLPSLEPICLGEFHTDW
IFSSAWINDNTLATGSRDNRLAFWTIPDEIPHSENDEGERGKLYPIVQPV
QHFQGVGNKDKVRAMVYNSLSEHLATIASNGYLHLWDVNTCQRTMTTTLP
FMKENVCIAHEKKNNLLYAVGSLSHVSLVDTHGGKSVASLCSSEQGAGVR
SVSFNDCIVTVGTGYGSLLFYDIRMNRLLQRQDGTQCQLKVGHGWLRRDL
VYQQYFWEAECYPNAIYAHSYHPTTMKLLSAGGPLALGLYGNYLAYWD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004016XLOC_004016Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007161TCONS_00007161Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 196..237
e-value: 0.52
score: 18.8
coord: 137..175
e-value: 0.0064
score: 25.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 205..246
score: 8.771
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 186..398
e-value: 7.2E-16
score: 57.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 16..185
e-value: 2.7E-12
score: 45.7
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 224..238
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 144..246
score: 8.808
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 51..337

Blast
[Close]
BLAST of TCONS_00007161-protein vs. Swiss-Prot (Human)
Match: DCA12 (DDB1- and CUL4-associated factor 12 OS=Homo sapiens GN=DCAF12 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 5.462e-101
Identity = 163/423 (38.53%), Postives = 248/423 (58.63%), Query Frame = 0 
Query:    2 RVQQPNVCSNIFSY-----VNLRQETTSTRISDDFKSSFSALRLPEAMRENELAFGEYDKIFAAEWLNEDHIICGTKCNNLIVQNITSQSKWEIPLMKGSGHIPIPDKNCGIHSISKNENNTKLATGALNPNSIGFYRLPSLEPICLG-EFHTDWIFSSAWINDNTLATGSRDNRLAFWTIPDEIPHSENDEGERGKLYPIVQPVQH--FQGVGNKD------KVRAMVYNSLSEHLATIASNGYLHLWDV-NTCQRTMTTTLPFMKENVCIAHEKKNNLLYAVGSLSHVSLVD-THGGKSVASLCSSEQGAGVRSVSFNDCIVTVGTGYGSLLFYDIRMNRLLQ-----------RQDGTQCQLKVGHGWLRRDLVYQQYFWEAECYPNAIYAHSYHPTTMKLLSAGGPLALGLYGNYLAYW 397
            R + P V  ++  Y     V L+ ET+ +R+       ++A +LP  ++E E   G  +K+FA++WLN   ++CGTKCN L V ++ +    +IP++K      +  + CGIH+I  N + T LATG  NPNS+  YRLP+L+P+C+G + H DWIFS AWI+D    +GSRD  +  W + D++  +++D        P+   + H   + +  +D      KVRA+ +N+ ++ L  ++ +GY HLW   NT  + ++T LP+ +ENVC+A+  + + +YAVGS +HVS +D      +V S+CS E+G+G+RSVSF + I+TVGTG GSLLFYDIR  R L+           R  G   +L  G GWL  D  ++ YF + + +PNA+Y H Y  +  KL  AGGPL  GL+GNY   W
Sbjct:   36 RKRLPPVKRSLVYYLKNREVRLQNETSYSRV----LHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDV-LTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWS-VYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLW 452
The following BLAST results are available for this feature:
BLAST of TCONS_00007161-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCA125.462e-10138.53DDB1- and CUL4-associated factor 12 OS=Homo sapien... [more]
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