|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007161 ID=TCONS_00007161|Name=TCONS_00007161|organism=Clytia hemisphaerica|type=transcript|length=2034bp tttagaTTTCCAAAAGAATTACCAAAGAATGCAAACACAAGATactaaaa atcatcaaaagcaTAATAGGAAATAGAATAAATACATTTTGTAATAGATG AGAGTTCAACAGCCAAACGTAtgctcaaatattttcagctatgTAAATCT TAGGCAAGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCT TCTCGGCATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTC GGGGAATATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATAT TATCTGTGGAACAAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTC AATCAAAATGGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATT CCTGATAAAAACTGTGGCATACATAGTATATCTAAGAATGAAAATAACAC CAAGCTTGCTACTGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGT TGCCATCTCTGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATA TTTTCTTCAGCATGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGA CAACCGGCTTGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGA ACGATGAAGGGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAA CATTTTCAAGGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAA TAGTCTCTCTGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGCACC TTTGGGATGTGAACACGTGTCAACGAACGATGACAACAACGCTCCCATTT ATGAAAGAGAATGTTTGTATAGCGcacgagaaaaaaaataatttgctgTA TGCTGTTGGATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGA AGTCGGTCGCTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCA GTCAGTTTTAATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATT ATTATTTTACGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAA CACAATGTCAACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTT TACCAGCAGTATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGC ACACAGTTATCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCAC TAGCTCTGGGGTTATATGGTAATTATCTGGCTTACTGGGATTGATGCTCA TGTTATACCTAGATCTGTTAATATATATGATTGATGTTATACATGTTACA TACTTGGTTTTATATGGCATATTATGCCTTCAAATGATGAATGGTGCGTA CATATTATGAATGTTGATATGGTACATCTTCATGTTTTTGTTATGGCGTC CAGCAATGATGTTACGCAAATTTTGATCTACGAAAGTAAAGACCTCACTA CACTGGTTTCGAAAGGTAACAAATTTCTGACTTGTTTTAGGGTCAAATGT TTCTTTCCTTTAAGATTTATGCGAAACATATTACATCAAAGAAAAACGTG TTACAGCAGACTACAAATTCCTTGCTGAATTAGATAATTGTTCATTTTAA GGGCGAATACTACATACTTTAGTAAACTCAAACTTCGAAATTTCTAACTT TAAATACACTGTTTGTATAGGGTACGGGTGAAACTTTTGTCGCTTTGTTG TTTTCATTTCTGTAATCGATGGCTATTTTTGACCCATCCCCATTGTTATT TGGTTaattgtgtttttttctttctccgTCCAATTTGTAAATATTGTATA TATGGTAGAATACAGTCAAGTTTTTTAAAGTGAAATTGTTCAAAACTTTC CTCAAGGAAACTGAAAAATATTGGTCTTGATAGACTATATTTTATAGAAA TTAAACTGATCCTGACTGATTCAAAGACAAAAAATGGAAGAATATAGGCC CGTTCAGTACCGTTTGATTacactcttctttttt Run BLAST on NCBI protein sequence of TCONS_00007161-protein >TCONS_00007161-protein ID=TCONS_00007161-protein|Name=TCONS_00007161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MRVQQPNVCSNIFSYVNLRQETTSTRISDDFKSSFSALRLPEAMRENELA FGEYDKIFAAEWLNEDHIICGTKCNNLIVQNITSQSKWEIPLMKGSGHIP IPDKNCGIHSISKNENNTKLATGALNPNSIGFYRLPSLEPICLGEFHTDW IFSSAWINDNTLATGSRDNRLAFWTIPDEIPHSENDEGERGKLYPIVQPV QHFQGVGNKDKVRAMVYNSLSEHLATIASNGYLHLWDVNTCQRTMTTTLP FMKENVCIAHEKKNNLLYAVGSLSHVSLVDTHGGKSVASLCSSEQGAGVR SVSFNDCIVTVGTGYGSLLFYDIRMNRLLQRQDGTQCQLKVGHGWLRRDL VYQQYFWEAECYPNAIYAHSYHPTTMKLLSAGGPLALGLYGNYLAYWD Run BLAST on NCBI transcript from alignment at sc0000074:516574..524127+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007161 ID=TCONS_00007161|Name=TCONS_00007161|organism=Clytia hemisphaerica|type=transcript|length=7554bp|location=Sequence derived from alignment at sc0000074:516574..524127+ (Clytia hemisphaerica) tttagaTTTCCAAAAGAATTACCAAAGAATGCAAACACAAGATactaaaa
atcatcaaaagcaTAATAGGAAATAGAATAAATACATTTTGTAATAGATG
AGAGTTCAACAGCCAAACGTAtgctcaaatattttcagctatgTAAATCT
TAGGCAAGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCT
TCTCGGCATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTC
GGGGAATATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATAT
TATCTGTGGAACAAAGTGTAACAATGTACGTATTTAAACGTCTGACTTGA
TCACAGATAGCCTTAGTTATATCTCTATCTCTAAATCAATCtacaaccaa
aacaaaaaaggaggcaatttcaattttataaaTGGAATATTTGAAACgtt
attgaaaattatttcaaattttgtttcgaatttcagCTTATTGTCCAGAA
TATTACAAGTCAATCAAAATGGGAGATACCTCTCATGAAGGGTTCTGGTC
ATATCCCTATTCCTGATAAAAACTGTGGCATACATAGTATATCTAAGAAT
GAAAATAACACCAAGCTTGCTACTGGAGCACTAAACCCAAACTCTATTGG
ATTTTATCGGTTGCCATCTCTGGAGCCAATTTGTCTCGGGGAGGTAAGAA
ATTTGTAATATCAAATTGTAATAAGTTCCCTTTGATGTGTTTTTCATTAT
TAGCATGGAAGTTGAAGTTTTTATCTAGTCAACATAACCTTGTAGATTTT
AGTATTTATGATTTGAAGATTTATTGCAGAATTTGATTCCTGCTACTCTA
AGGCAAGCCAGTAAATCTGGAATGTGATCTATACCGGGGTAAAAGGGAGC
TGTAGAAGTTGAATATTCAGTCTTTTAGCCAGCATTTTATGTTTGTatat
gtttttcttctttttagtttCACACTGATTGGATATTTTCTTCAGCATGG
ATCAATGATAACACTTTGGCAACcggtatgatttttttcttactttctaA
TCATACTTACTGTATATACGTTTTTATGGGCTGTTTATGTAATACAGTAC
ACGTACAGTACACAAGGAACTTTCGGGTCACGGCTGGGGTTGcctctagc
tcattttctgaaacatTTGCTTTGgccacccctgatattatagCATTATT
ATGCTTATTctattgggtcaagggctatcgtttgtcatgcttagattatc
taaaaaccTTTAACTTTACAATATTTAAAATAATTGGCTAATTTCAGGGC
CCGAGTCTTAGCAACTTGATtgcttaaaaaaatgtgtagttatagttcat
ttttttctatgTGTATATATGACCTCTCACACAAGATCTTTTCTAAATTA
CACAAGAATTATCAGAAATAGCAGAATTATATAAAAGCGAGAAGTCATTT
TTCACAAATCTGATTTCATATAAAATGATATATGCATAACAGTTATGCAA
TGAACTACCCTGAGCTCTCTTTGTTATCTTTTGTAAAGTATAATTATATT
GAAATCTATTTTAATGAGATTTAACAGAGTTTGCAGAGAGATTTATTTAT
CATCTGATTTTTCATGTTTGAAAAAGGGTTTTCCTTTTAATTACATTTAT
CAAATTTCAGCTTTTGCTCTATTTGCATAGCAACGAGAGACTGTTTCAAA
CGTTTGCACATAAGATGAAAATTTCGACTTTTAGATTAAAATACAGTTGA
CAGCCCAGCTcattaaaacttgaaatttgTTTCCAAAATAAACAATCAAT
TTTCCCTGTCATCACCACTATCATTAGACTAAGCTAATTAAATCTCGATC
GTTGATAAGGAAGTCGTTGACGGGAAAGTCCCACTCGTCTGTTTTTACAA
AGATTTATACTGCCTAGAGATCTTTGTTATGACAAAGTTATGCTGACTGA
TGAACTAGAAGAGAAAATAACTTCTCTGTAAGAAACAAACCTGACTTTCT
TTCTGATAACTCAGCATTTTAATAaacgttttttatgagaacaaactata
taagaacataaggcttcgatggcgaaaataagaacatgttaagaacatcc
gaaggcttcagaaATTATGGAtgctctcataaaaaaacgtataaaccGAG
ACTTTGTGACCTTTAACAATATGTAGACTCACCCCTCAGAGACCTACCTA
GTAGATTGAGTTTTTTATCTTCTAGATTgatcaaaactttgaaacctTCA
TCAGCCTTAGACGTGTAATGTTTTTTACTATATTGATGaaaacccccttc
tcacagactcagTGGAATTTTTCAGTCAgtaggggtaaaaataacggacc
aaaactcgacgGGGATTAACATTCCCATGCTTTtgtatggctggggattt
caattcgattgtttttgagccagaaaattcagtggagatTGGAAAAACAG
Cacgatattttgcagtgagggtttgcttatctgattattttcagcgtgta
caaaaattggaggataattttccactggggacgatattttggccaatttt
tcctgTGAGAagaggtcccagtgggtctgtgagaagggtgtgtACGAAAT
AATGAAATGCAGCGTTTGTTTTACAGGTTCTCGAGACAACCGGCTTGCTT
TTTGGACCATCCCCGACGAAATACCGCATTCAGAGAACGATGAAGGGGAA
AGGGGAAAACTTTATCCAATTGTTCAACCTGTACAACATTTTCAAGGGGT
TGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCTCTCTGAGG
TATGTGTTAAAGCTATTTTTCACATTCGTTTTTTATTATAGACCGTTCCT
TATACCGTTCCATGACCACTTTCGAGCTTTGATTCGATTAGATGTAAATT
CGAATTTCGTATTTTGTTAGTCAATTCATGAATCAATTCACCCTAATACA
AGTTTGCATATGTGATTGAGCCGATAGGTTAcgatcaaagtcataatatt
tgagaaaaaaagggaaattcccacgaaatcttacaaccataaacgatttg
gaagcgctctaaattaggttggacgggtagagttttaactctagacttaa
gacttgagatctgaggaactaaaagtccaagaatggtccaataaattcta
taatctcatggttgattgacatttgattgacgtttttgcttacgttaatt
tgtaatttccctcctagcttttgtaatttccttcCTAGATTTTATAATTT
Cccgtaaaagtgaaattttcatcgtttggaaattcatcaccttttttcaa
ctttcttactaactttaaaggcttaagtaaatggaatgCTATCCAATAaa
aactcgattcgcgtttctatgacttttttgagacctctttcagaattgtt
aaaatttcaatccaaaccatgagattaaccaggaaaccctcggtcaaatt
tcgaaatgttttaaaattgacctcgggaaatttatcccgaatttccctca
taaccatgagattactagtactaaaCCCCTcctaaattgaaatattcgaa
tagatttatcaatttgcccaaaagcgactttttcgcccgaactttaaatt
gctgaaaacgaggaactaaccaaaattcccaatatattttgaccgagatt
aTAGACCCAGTCCACTCTTTTAGAGGCGTACGAATTTACCTCCTGTCTTT
CCATAGACAAAAAAAGCGACTTTAAATAAGACTTACTCatatagattttt
acttttgaGAATGAATTACGTAAAtggaaaaatcgaaaatttcattCCGT
ACAAATGACGTAGATTAACCAAACATGAAGaacatttctatcaaaatggg
cttttccagaaaaaaatcgtgcaccccctgttgaggaggtccatttccgt
tccaagggggtaaggtttgaaatgcagttgaattccataagggtagacga
aaaaccgtcaaaaataagcggaattccaagggggtaatgattgaaaattt
tcggaattccagaggggtatgatcctaaaattgcctggaattccaagggg
gtaggtcacaaaaggttggacctcctcaacagggggtgcacggtttgttt
tttttggaaaagcccaatatgaTATTTTCTTTTACTCTCATCAGCACTTA
GCGACCATTGCATCGAATGGCTACTTGCACCTTTGGGATGTGAACACGTG
TCAACGAGTGAGTATTTTATCATAAGGTTCTTTCGATAAGTTgtgttgtt
ttggttttttcaaCATGCTTAGTGTTATTGGATACATATTCTTTGACGCC
TAAATTTAAccgattcatgatatgcaccattgcaatgtcttctgacatta
catcacggatccaatagctgattggtgaCGTAAAAttagtcaatacgtca
ctttcaaccaatcagctgttgggtccgtggaagacactgcaatggtgtat
atcatgaatagaggAGAGGAGGAATTATGGATTAAATCTtgtgcattttt
ttgttttcatctgGCATATATTTCGCAATGTGGCGATagattttgctttc
aatttggcttttgtgtgaaaaccacttTGAAGACCATGAAAGGAACCTAC
AGCAAAAAAGTCGGTCAACTGAGCTAGAGCTAACTCTCTTCTCGTTTTAT
TACAGACGATGACAACAACGCTCCCATTTATGAAAGAGAATGTTTGTATA
GCGcacgagaaaaaaaataatttgctgTATGCTGTTGGATCTCTGTCTCA
CGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGGTCGCTAGTCTATGTT
CAAGTGAACAAGGAGCTGGTAAGTAAAGACTGGATTGTATctaaatttct
attttatttattttttaatgaataagAGTTATGGGGGCCATgttattcac
ttttttgaagattttaaggATGTCAGTTTGCAAAAATATTCGTGTTTGGG
CAAAAGAAAGGTAGGGTAGTCGTAATTTCTTGAAATAACATGATTTTATG
GTaaagtagagtctctttaactcgaaaccCTATAACACAAATGTTTCCTT
AACTCAGACAAGTTTtcttgtcccttcagttaacaaagCCTTATGaactt
tactccataactcgaaaaaattGTGTTACccgtgtgtgttcgagttatag
agactcgtGTGtacaattttagaaaatttgacaaaaaatcataTTGGACA
TCATTTTGAGAGTTCGAGATGGGAaataaatttagtttaaaaacgTTTTC
TAGGAGCCATATATGGTTCTGGATTGGAATAAATTAGAGTAGGGCAGATT
GGAGATCTAGAGAAAAAGACCTAGATGTTTAAGGGGTCAAAGGTTTGGTT
CAAGATTGAGAAGATATTCAAGATATAACAAATGAATGAACAAAATAGTC
TTTTAGCTTGTTTTACATCATGTGGTTTTTAATTATTGAGGCTTTAGGAA
TTATCGTATAAAGAGAATTAAAACTCGATTTTCTTATGATCTTGTTCTTA
TGTTGATCCCTTTCagaatcaaaacattttaaCCAAATGCGAAAAAGTTA
TCCAATGTCCTAATCTCATGAAAACTTAAATTTAAAAACCCCATTCTATT
TTATAACAGCACCCACTTTGCTCTatgtttttatgtatttttgtcgtata
tttttgcttttctttacacttcaaatctttaaatcttcaaattattattt
tctacGCTGGAGTCTTtataaaagtccaaaaaaccccgAAGAACTAAAAT
TTGTTCAAGTTATGTATTGAAGTTCAAgaagttaaggagacattcgagtt
ataggaGATATTCGATTCACAGAGGCTTAAGTTGTGGAGATTCTACTTAG
AAAATCGCTCAACTTAAAACATTATATTAACTTGAAtttctttctctctt
tttgcAGGCGTACGGTCAGTCAGTTTTAATGATTGCATCGTGACAGTTGG
GACTGGGTACGGGTCATTATTATTTTACGACATTCGAATGAACAGACTTC
TTCAGCGGCAAGATGGAACACAATGTCAACTCAAAGTCGGTCACGGTTGG
CTGGTAAGTACaatcgatttttttttcgagtCTCGATTAATGCGATTATT
TTTCTTCAGCCTAAAGGGATTAATCAAACTGTTTGATGACCACGACCAAG
TGGTAATTTGCTCCTATTGTCCTGAAAAAAACACAAACCTTTACCTAAAT
CCCTTTATAAAACTTTGTGTgaaacggtgaaaaagaatgcggctattcat
aatatgcaccattgcaaagtcttccacggacccaacagctgattggtgga
aagtgacgtattgacatattttacgtcacttacaaccaatcagataTTGG
GAcagtgatgtaatgtcagaagacatttcaatggtgcatatcatgaatta
taatttgatgttcccctttttaaaaatttgttagTAATCCGGCATCacaa
ttttttcaattgttAAAGTTTGATGTCAGTTGTTTTCTTGACTCATTTGA
ATCATTGCTTCAGTTCATTTTTTAGGTAGCTGACCTGACTGATCTGGAAC
CCAGTGCATACAATCGAAAGAATATCTAATGTCTAAAAGTTCTGCATTAA
TGTCTGCTATCCATGTAAAATACCGACTCTAAACTTTTCTCTACCTTTTC
CTTAGCGGCGTGATTTAGTTTACCAGCAGTATTTCTGGGAAGCAGAATGT
TATCCGAACGCTATCTATGCACACAGTTATCATCCAACTACCATGAAACT
TCTGTCGGCTGGTGGTCCACTAGCTCTGGGGTTATATGGTAATTATCTGG
CTTACTGGGATTGATGCTCATGTTATACCTAGATCTGTTAATATATATGA
TTGATGTTATACATGTTACATACTTGGTTTTATATGGCATATTATGCCTT
CAAATGATGAATGGTGCGTACATATTATGAATGTTGATATGGTACATCTT
CATGTTTTTGTTATGGCGTCCAGCAATGATGTTACGCAAATTTTGATCTA
CGAAAGTAAAGACCTCACTACACTGGTTTCGAAAGGTAACAAATTTCTGA
CTTGTTTTAGGGTCAAATGTTTCTTTCCTTTAAGATTTATGCGAAACATA
TTACATCAAAGAAAAACGTGTTACAGCAGACTACAAATTCCTTGCTGAAT
TAGATAATTGTTCATTTTAAGGGCGAATACTACATACTTTAGTAAACTCA
AACTTCGAAATTTCTAACTTTAAATACACTGTTTGTATAGGGTACGGGTG
AAACTTTTGTCGCTTTGTTGTTTTCATTTCTGTAATCGATGGCTATTTTT
GACCCATCCCCATTGTTATTTGGTTaattgtgtttttttctttctccgTC
CAATTTGTAAATATTGTATATATGGTAGAATACAGTCAAGTTTTTTAAAG
TGAAATTGTTCAAAACTTTCCTCAAGGAAACTGAAAAATATTGGTCTTGA
TAGACTATATTTTATAGAAATTAAACTGATCCTGACTGATTCAAAGACAA
AAAATGGAAGAATATAGGCCCGTTCAGTACCGTTTGATTacactcttctt
tttt Coding sequence (CDS) from alignment at sc0000074:516574..524127+ >TCONS_00007161 ID=TCONS_00007161|Name=TCONS_00007161|organism=Clytia hemisphaerica|type=CDS|length=9576bp|location=Sequence derived from alignment at sc0000074:516574..524127+ (Clytia hemisphaerica) ATGAGAGTTCAACAGCCAAACGTAtgctcaaatattttcagctatgTAAA TCTTAGGCAAGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAA GCTTCTCGGCATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCA TTCGGGGAATATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCA TATTATCTGTGGAACAAAGTGTAACAATCTTATTGTCCAGAATATTACAA GTCAATCAAAATGGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCT ATTCCTGATAAAAACTGTGGCATACATAGTATATCTAAGAATGAAAATAA CACCAAGCTTGCTACTGGAGCACTAAACCCAAACTCTATTGGATTTTATC GGTTGCCATCTCTGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGG ATATTTTCTTCAGCATGGATCAATGATAACACTTTGGCAACcgGTTCTCG AGACAACCGGCTTGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAG AGAACGATGAAGGGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTA CAACATTTTCAAGGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTA TAATAGTCTCTCTGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGC ACCTTTGGGATGTGAACACGTGTCAACGAACGATGACAACAACGCTCCCA TTTATGAAAGAGAATGTTTGTATAGCGcacgagaaaaaaaataatttgct gTATGCTGTTGGATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAG GGAAGTCGGTCGCTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGG TCAGTCAGTTTTAATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTC ATTATTATTTTACGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATG GAACACAATGTCAACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTA GTTTACCAGCAGTATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTA TGCACACAGTTATCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTC CACTAGCTCTGGGGTTATATGGTAATTATCTGGCTTACTGGGATTGAATG AGAGTTCAACAGCCAAACGTAtgctcaaatattttcagctatgTAAATCT TAGGCAAGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCT TCTCGGCATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTC GGGGAATATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATAT TATCTGTGGAACAAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTC AATCAAAATGGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATT CCTGATAAAAACTGTGGCATACATAGTATATCTAAGAATGAAAATAACAC CAAGCTTGCTACTGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGT TGCCATCTCTGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATA TTTTCTTCAGCATGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGA CAACCGGCTTGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGA ACGATGAAGGGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAA CATTTTCAAGGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAA TAGTCTCTCTGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGCACC TTTGGGATGTGAACACGTGTCAACGAACGATGACAACAACGCTCCCATTT ATGAAAGAGAATGTTTGTATAGCGcacgagaaaaaaaataatttgctgTA TGCTGTTGGATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGA AGTCGGTCGCTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCA GTCAGTTTTAATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATT ATTATTTTACGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAA CACAATGTCAACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTT TACCAGCAGTATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGC ACACAGTTATCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCAC TAGCTCTGGGGTTATATGGTAATTATCTGGCTTACTGGGATTGAATGAGA GTTCAACAGCCAAACGTAtgctcaaatattttcagctatgTAAATCTTAG GCAAGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCTTCT CGGCATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTCGGG GAATATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATATTAT CTGTGGAACAAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTCAAT CAAAATGGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATTCCT GATAAAAACTGTGGCATACATAGTATATCTAAGAATGAAAATAACACCAA GCTTGCTACTGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGTTGC CATCTCTGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATATTT TCTTCAGCATGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGACAA CCGGCTTGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGAACG ATGAAGGGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAACAT TTTCAAGGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAG TCTCTCTGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGCACCTTT GGGATGTGAACACGTGTCAACGAACGATGACAACAACGCTCCCATTTATG AAAGAGAATGTTTGTATAGCGcacgagaaaaaaaataatttgctgTATGC TGTTGGATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGAAGT CGGTCGCTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTC AGTTTTAATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATTATT ATTTTACGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAACAC AATGTCAACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTAC CAGCAGTATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGCACA CAGTTATCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCACTAG CTCTGGGGTTATATGGTAATTATCTGGCTTACTGGGATTGAATGAGAGTT CAACAGCCAAACGTAtgctcaaatattttcagctatgTAAATCTTAGGCA AGAGACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCTTCTCGG CATTACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTCGGGGAA TATGATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATATTATCTG TGGAACAAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTCAATCAA AATGGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATTCCTGAT AAAAACTGTGGCATACATAGTATATCTAAGAATGAAAATAACACCAAGCT TGCTACTGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGTTGCCAT CTCTGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATATTTTCT TCAGCATGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGACAACCG GCTTGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGAACGATG AAGGGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAACATTTT CAAGGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCT CTCTGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGCACCTTTGGG ATGTGAACACGTGTCAACGAACGATGACAACAACGCTCCCATTTATGAAA GAGAATGTTTGTATAGCGcacgagaaaaaaaataatttgctgTATGCTGT TGGATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGG TCGCTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTCAGT TTTAATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATTATTATT TTACGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAACACAAT GTCAACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTACCAG CAGTATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGCACACAG TTATCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCACTAGCTC TGGGGTTATATGGTAATTATCTGGCTTACTGGGATTGAATGAGAGTTCAA CAGCCAAACGTAtgctcaaatattttcagctatgTAAATCTTAGGCAAGA GACAACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCTTCTCGGCAT TACGTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTCGGGGAATAT GATAAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATATTATCTGTGG AACAAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTCAATCAAAAT GGGAGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATTCCTGATAAA AACTGTGGCATACATAGTATATCTAAGAATGAAAATAACACCAAGCTTGC TACTGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGTTGCCATCTC TGGAGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATATTTTCTTCA GCATGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGACAACCGGCT TGCTTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGAACGATGAAG GGGAAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAACATTTTCAA GGGGTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCTCTC TGAGCACTTAGCGACCATTGCATCGAATGGCTACTTGCACCTTTGGGATG TGAACACGTGTCAACGAACGATGACAACAACGCTCCCATTTATGAAAGAG AATGTTTGTATAGCGcacgagaaaaaaaataatttgctgTATGCTGTTGG ATCTCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGGTCG CTAGTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTCAGTTTT AATGATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATTATTATTTTA CGACATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAACACAATGTC AACTCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTACCAGCAG TATTTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGCACACAGTTA TCATCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCACTAGCTCTGG GGTTATATGGTAATTATCTGGCTTACTGGGATTGAATGAGAGTTCAACAG CCAAACGTAtgctcaaatattttcagctatgTAAATCTTAGGCAAGAGAC AACTTCCACAAGAATTTCAGATGACTTCAAATCAAGCTTCTCGGCATTAC GTTTGCCTGAAGCTATGAGAGAAAATGAATTGGCATTCGGGGAATATGAT AAAATCTTTGCAGCTGAATGGCTGAATGAGGATCATATTATCTGTGGAAC AAAGTGTAACAATCTTATTGTCCAGAATATTACAAGTCAATCAAAATGGG AGATACCTCTCATGAAGGGTTCTGGTCATATCCCTATTCCTGATAAAAAC TGTGGCATACATAGTATATCTAAGAATGAAAATAACACCAAGCTTGCTAC TGGAGCACTAAACCCAAACTCTATTGGATTTTATCGGTTGCCATCTCTGG AGCCAATTTGTCTCGGGGAGtttCACACTGATTGGATATTTTCTTCAGCA TGGATCAATGATAACACTTTGGCAACcgGTTCTCGAGACAACCGGCTTGC TTTTTGGACCATCCCCGACGAAATACCGCATTCAGAGAACGATGAAGGGG AAAGGGGAAAACTTTATCCAATTGTTCAACCTGTACAACATTTTCAAGGG GTTGGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCTCTCTGA GCACTTAGCGACCATTGCATCGAATGGCTACTTGCACCTTTGGGATGTGA ACACGTGTCAACGAACGATGACAACAACGCTCCCATTTATGAAAGAGAAT GTTTGTATAGCGcacgagaaaaaaaataatttgctgTATGCTGTTGGATC TCTGTCTCACGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGGTCGCTA GTCTATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTCAGTTTTAAT GATTGCATCGTGACAGTTGGGACTGGGTACGGGTCATTATTATTTTACGA CATTCGAATGAACAGACTTCTTCAGCGGCAAGATGGAACACAATGTCAAC TCAAAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTACCAGCAGTAT TTCTGGGAAGCAGAATGTTATCCGAACGCTATCTATGCACACAGTTATCA TCCAACTACCATGAAACTTCTGTCGGCTGGTGGTCCACTAGCTCTGGGGT TATATGGTAATTATCTGGCTTACTGGGATTGAATGAGAGTTCAACAGCCA AACGTAtgctcaaatattttcagctatgTAAATCTTAGGCAAGAGACAAC TTCCACAAGAATTTCAGATGACTTCAAATCAAGCTTCTCGGCATTACGTT TGCCTGAAGCTATGAGAGAAAATGAATTGGCATTCGGGGAATATGATAAA ATCTTTGCAGCTGAATGGCTGAATGAGGATCATATTATCTGTGGAACAAA GTGTAACAATCTTATTGTCCAGAATATTACAAGTCAATCAAAATGGGAGA TACCTCTCATGAAGGGTTCTGGTCATATCCCTATTCCTGATAAAAACTGT GGCATACATAGTATATCTAAGAATGAAAATAACACCAAGCTTGCTACTGG AGCACTAAACCCAAACTCTATTGGATTTTATCGGTTGCCATCTCTGGAGC CAATTTGTCTCGGGGAGtttCACACTGATTGGATATTTTCTTCAGCATGG ATCAATGATAACACTTTGGCAACcgGTTCTCGAGACAACCGGCTTGCTTT TTGGACCATCCCCGACGAAATACCGCATTCAGAGAACGATGAAGGGGAAA GGGGAAAACTTTATCCAATTGTTCAACCTGTACAACATTTTCAAGGGGTT GGAAATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCTCTCTGAGCA CTTAGCGACCATTGCATCGAATGGCTACTTGCACCTTTGGGATGTGAACA CGTGTCAACGAACGATGACAACAACGCTCCCATTTATGAAAGAGAATGTT TGTATAGCGcacgagaaaaaaaataatttgctgTATGCTGTTGGATCTCT GTCTCACGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGGTCGCTAGTC TATGTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTCAGTTTTAATGAT TGCATCGTGACAGTTGGGACTGGGTACGGGTCATTATTATTTTACGACAT TCGAATGAACAGACTTCTTCAGCGGCAAGATGGAACACAATGTCAACTCA AAGTCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTACCAGCAGTATTTC TGGGAAGCAGAATGTTATCCGAACGCTATCTATGCACACAGTTATCATCC AACTACCATGAAACTTCTGTCGGCTGGTGGTCCACTAGCTCTGGGGTTAT ATGGTAATTATCTGGCTTACTGGGATTGAATGAGAGTTCAACAGCCAAAC GTAtgctcaaatattttcagctatgTAAATCTTAGGCAAGAGACAACTTC CACAAGAATTTCAGATGACTTCAAATCAAGCTTCTCGGCATTACGTTTGC CTGAAGCTATGAGAGAAAATGAATTGGCATTCGGGGAATATGATAAAATC TTTGCAGCTGAATGGCTGAATGAGGATCATATTATCTGTGGAACAAAGTG TAACAATCTTATTGTCCAGAATATTACAAGTCAATCAAAATGGGAGATAC CTCTCATGAAGGGTTCTGGTCATATCCCTATTCCTGATAAAAACTGTGGC ATACATAGTATATCTAAGAATGAAAATAACACCAAGCTTGCTACTGGAGC ACTAAACCCAAACTCTATTGGATTTTATCGGTTGCCATCTCTGGAGCCAA TTTGTCTCGGGGAGtttCACACTGATTGGATATTTTCTTCAGCATGGATC AATGATAACACTTTGGCAACcgGTTCTCGAGACAACCGGCTTGCTTTTTG GACCATCCCCGACGAAATACCGCATTCAGAGAACGATGAAGGGGAAAGGG GAAAACTTTATCCAATTGTTCAACCTGTACAACATTTTCAAGGGGTTGGA AATAAAGACAAAGTTCGCGCTATGGTTTATAATAGTCTCTCTGAGCACTT AGCGACCATTGCATCGAATGGCTACTTGCACCTTTGGGATGTGAACACGT GTCAACGAACGATGACAACAACGCTCCCATTTATGAAAGAGAATGTTTGT ATAGCGcacgagaaaaaaaataatttgctgTATGCTGTTGGATCTCTGTC TCACGTCTCTCTGGTAGATACTCACGGAGGGAAGTCGGTCGCTAGTCTAT GTTCAAGTGAACAAGGAGCTGGCGTACGGTCAGTCAGTTTTAATGATTGC ATCGTGACAGTTGGGACTGGGTACGGGTCATTATTATTTTACGACATTCG AATGAACAGACTTCTTCAGCGGCAAGATGGAACACAATGTCAACTCAAAG TCGGTCACGGTTGGCTGCGGCGTGATTTAGTTTACCAGCAGTATTTCTGG GAAGCAGAATGTTATCCGAACGCTATCTATGCACACAGTTATCATCCAAC TACCATGAAACTTCTGTCGGCTGGTGGTCCACTAGCTCTGGGGTTATATG GTAATTATCTGGCTTACTGGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007161-exon-sc0000074-1491911889:516574..516898 | TCONS_00007161-exon-sc0000074-1491911889:516574..516898 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:516574..516898 | TCONS_00007161-exon-sc0000074-1510915933:516574..516898 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:516574..516898 | TCONS_00007161-exon-sc0000074-1575043694:516574..516898 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:517060..517266 | TCONS_00007161-exon-sc0000074-1491911889:517060..517266 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:517060..517266 | TCONS_00007161-exon-sc0000074-1510915933:517060..517266 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:517060..517266 | TCONS_00007161-exon-sc0000074-1575043694:517060..517266 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:517541..517598 | TCONS_00007161-exon-sc0000074-1491911889:517541..517598 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:517541..517598 | TCONS_00007161-exon-sc0000074-1510915933:517541..517598 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:517541..517598 | TCONS_00007161-exon-sc0000074-1575043694:517541..517598 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:519200..519372 | TCONS_00007161-exon-sc0000074-1491911889:519200..519372 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:519200..519372 | TCONS_00007161-exon-sc0000074-1510915933:519200..519372 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:519200..519372 | TCONS_00007161-exon-sc0000074-1575043694:519200..519372 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:520718..520780 | TCONS_00007161-exon-sc0000074-1491911889:520718..520780 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:520718..520780 | TCONS_00007161-exon-sc0000074-1510915933:520718..520780 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:520718..520780 | TCONS_00007161-exon-sc0000074-1575043694:520718..520780 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:521229..521391 | TCONS_00007161-exon-sc0000074-1491911889:521229..521391 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:521229..521391 | TCONS_00007161-exon-sc0000074-1510915933:521229..521391 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:521229..521391 | TCONS_00007161-exon-sc0000074-1575043694:521229..521391 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:522481..522626 | TCONS_00007161-exon-sc0000074-1491911889:522481..522626 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:522481..522626 | TCONS_00007161-exon-sc0000074-1510915933:522481..522626 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:522481..522626 | TCONS_00007161-exon-sc0000074-1575043694:522481..522626 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1491911889:523229..524127 | TCONS_00007161-exon-sc0000074-1491911889:523229..524127 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1510915933:523229..524127 | TCONS_00007161-exon-sc0000074-1510915933:523229..524127 | Clytia hemisphaerica | exon |
TCONS_00007161-exon-sc0000074-1575043694:523229..524127 | TCONS_00007161-exon-sc0000074-1575043694:523229..524127 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000074 | supercontig | sc0000074:516574..524127 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00007161 vs. Swiss-Prot (Human)
Match: DCA12 (DDB1- and CUL4-associated factor 12 OS=Homo sapiens GN=DCAF12 PE=1 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.379e-86 Identity = 151/403 (37.47%), Postives = 235/403 (58.31%), Query Frame = 2
Query: 101 RVQQPNVCSNIFSY-----VNLRQETTSTRISDDFKSSFSALRLPEAMRENELAFGEYDKIFAAEWLNEDHIICGTKCNNLIVQNITSQSKWEIPLMKGSGHIPIPDKNCGIHSISKNENNTKLATGALNPNSIGFYRLPSLEPICLG-EFHTDWIFSSAWINDNTLATGSRDNRLAFWTIPDEIPHSENDEGERGKLYPIVQPVQH--FQGVGNKD------KVRAMVYNSLSEHLATIASNGYLHLWDV-NTCQRTMTTTLPFMKENVCIAHEKKNNLLYAVGSLSHVSLVDT-HGGKSVASLCSSEQGAGVRSVSFNDCIVTVGTGYGSLLFYDIRMNRLLQ-----------RQDGTQCQLKVGHGWLRRDLVYQQYFWEAECYPNAIYAHSYHPTTMK 1228
R + P V ++ Y V L+ ET+ +R+ ++A +LP ++E E G +K+FA++WLN ++CGTKCN L V ++ + +IP++K + + CGIH+I N + T LATG NPNS+ YRLP+L+P+C+G + H DWIFS AWI+D +GSRD + W + D++ +++D P+ + H + + +D KVRA+ +N+ ++ L ++ +GY HLW NT + ++T LP+ +ENVC+A+ + + +YAVGS +HVS +D +V S+CS E+G+G+RSVSF + I+TVGTG GSLLFYDIR R L+ R G +L G GWL D ++ YF + + +PNA+Y H Y + K
Sbjct: 36 RKRLPPVKRSLVYYLKNREVRLQNETSYSRV----LHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDV-LTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWS-VYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTK 432
The following BLAST results are available for this feature:
|