TCONS_00007249-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007249-protein
Unique NameTCONS_00007249-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007249-protein ID=TCONS_00007249-protein|Name=TCONS_00007249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp
MAEAERSGVYDPANAILGRKISYPSSVDEQLVQYVLREQQNGVLVQPDMI
RKEAKHLITPYCHDFKASTGWLDKFLSRNKLSLYPPKEKPVQMASRERQF
EKDSDYDDDDEDDDDDVDDRKDENGMAANVNPERLKAFNMFVRLFVDENL
DRLVPISKQPKEKINAIIMSCQRQFPEFGERARKRIRTYLKSCRRSTRLR
DTNTKISMTHIPASQLTEVNNILAQACQNETNEAAKRQRIDPKTHVSSGG
VSGGGSVLAADKSSKPPQAQKILLEHIVNSATGGRVANEKRKASQGIAVH
PSFIPSSVKEPLLKISGTELSSVRALIAGYRQSAAYLTRSADELEELLKN
CQAFPDEAVKTETVTGGITLPEPNSKDSSVLPTAEKDGIKSERGEAEDHK
MVARKRKHDDELPLRTPVKYPVEIPKANLQQNTSAETSNSAKTTKIDKVV
EPVQQNNILVHHQPHHAPVKIQELPHQQQAPRLSVTVKQQQPTTHEIKLK
PATLLPHEGATMTALIPVDHTQAAIALPNKILLASPQRAVPLEKVSLQPA
RTSTQPTTIRPLQQATLVQIQPGPQQKSPARFTTVPQQNIIEIFNVKSPP
SRIQGTPIIAQPLNVLSNQFSTRPPQQLKTLQPILPHTRAMFHTVVHSSQ
QTTTNPQQTQNRLHHTQASSTSQVQHHQATNQQTSSSQENQQQQQHKHHQ
QIQQSPQPTNNLSRQITVSSQPSPQHSSNMENSNTHRQYPTNSGGVVQQM
YLIHSTSANNINQPPQQSPHQTVNNSRQQTQQQQPAIFNFEPANQPPQYA
RVSSHPSSINYNNSPVGSPLLHQHQQNRHMSPPAPNNMENTMKNNRHPSM
SGDYVSHHNFYDNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004072XLOC_004072Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007249TCONS_00007249Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006600HTH CenpB-type DNA-binding domainPFAMPF03221HTH_Tnp_Tc5coord: 27..82
e-value: 1.1E-9
score: 38.1
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 15..85
score: 12.257
NoneNo IPR availableGENE3D1.10.10.60coord: 24..82
e-value: 3.8E-9
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 646..742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..409
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 758..783
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..262
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 25..79

Blast
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BLAST of TCONS_00007249-protein vs. Swiss-Prot (Human)
Match: NOL4 (Nucleolar protein 4 OS=Homo sapiens GN=NOL4 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.358e-44
Identity = 114/257 (44.36%), Postives = 144/257 (56.03%), Query Frame = 0 
Query:  129 NVNPERLKAFNMFVRLFVDENLDRLVPISKQPKEKINAIIMSCQRQFPEFGERARKRIRTYLKSCRRSTRLRDTNTKISMTHIPASQLTE--VNNILAQACQNETNEAAKRQRIDPKTHVSSGGVSGGGSVLAADKSSKP------------PQAQKILLEHIVN-----------------------SATGGRVANEKRKASQGIAVHPSFIPSSVKEPLLKISGTELSSVRALIAGYRQSAAYLTRSADELEELL 348
             V  ERLKAFNMFVRLFVDENLDR+VPISKQPKEKI AII SC+RQFPE+ ERARKRIRTYLKSCRR  R     +   M+    S LT     +ILA AC++E+  AAKR R++ +   S+           ADK  KP            P +Q +L    +N                       S++G    + KR+    +A       SS   P  ++S TE+++VR L+AGYR+SAA+L RSADELE L+
Sbjct:  402 GVEAERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQERARKRIRTYLKSCRRMKR-----SGFEMSRPIPSHLTSAVAESILASACESESRNAAKRMRLERQQDESA----------PADKQCKPEATQATYSTSAVPGSQDVL---YINGNGTYSYHSYRGLGGGLLNLNDASSSGPTDLSMKRQ----LATSSGSSSSSNSRP--QLSPTEINAVRQLVAGYRESAAFLLRSADELENLI 634
The following BLAST results are available for this feature:
BLAST of TCONS_00007249-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOL41.358e-4444.36Nucleolar protein 4 OS=Homo sapiens GN=NOL4 PE=1 S... [more]
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