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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007249 ID=TCONS_00007249|Name=TCONS_00007249|organism=Clytia hemisphaerica|type=transcript|length=3531bpRun BLAST on NCBI protein sequence of TCONS_00007249-protein >TCONS_00007249-protein ID=TCONS_00007249-protein|Name=TCONS_00007249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp MAEAERSGVYDPANAILGRKISYPSSVDEQLVQYVLREQQNGVLVQPDMIRun BLAST on NCBI transcript from alignment at sc0000075:162963..181534+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007249 ID=TCONS_00007249|Name=TCONS_00007249|organism=Clytia hemisphaerica|type=transcript|length=18572bp|location=Sequence derived from alignment at sc0000075:162963..181534+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:162963..181534+ >TCONS_00007249 ID=TCONS_00007249|Name=TCONS_00007249|organism=Clytia hemisphaerica|type=CDS|length=2595bp|location=Sequence derived from alignment at sc0000075:162963..181534+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007249 vs. Swiss-Prot (Human)
Match: NOL4 (Nucleolar protein 4 OS=Homo sapiens GN=NOL4 PE=1 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 1.019e-42 Identity = 114/252 (45.24%), Postives = 143/252 (56.75%), Query Frame = 3
Query: 723 NVNPERLKAFNMFVRLFVDENLDRLVPISKQPKEKINAIIMSCQRQFPEFGERARKRIRTYLKSCRRSTRLRDTNTKISMTHIPASQLTE--VNNILAQACQNETNEAAKRQRIDPKTHXXXXXXXXXXXXLAADKSSKP------------PQAQKILLEHIVNSATGG---------RVANEKRKASQG---------IAVHPSFIPSSVKEPLLKISGTELSSVRALIAGYRQSAAYLTRSADELEELL 1382
V ERLKAFNMFVRLFVDENLDR+VPISKQPKEKI AII SC+RQFPE+ ERARKRIRTYLKSCRR R + M+ S LT +ILA AC++E+ AAKR R++ + S+ ADK KP P +Q +L +I + T + N +S G +A SS P ++S TE+++VR L+AGYR+SAA+L RSADELE L+
Sbjct: 402 GVEAERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQERARKRIRTYLKSCRRMKR-----SGFEMSRPIPSHLTSAVAESILASACESESRNAAKRMRLERQQDESA----------PADKQCKPEATQATYSTSAVPGSQDVL--YINGNGTYSYHSYRGLGGGLLNLNDASSSGPTDLSMKRQLATSSGSSSSSNSRP--QLSPTEINAVRQLVAGYRESAAFLLRSADELENLI 634 The following BLAST results are available for this feature:
BLAST of TCONS_00007249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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