TCONS_00007636-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007636-protein
Unique NameTCONS_00007636-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007636-protein ID=TCONS_00007636-protein|Name=TCONS_00007636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MKRSQNQEVKPYVPKRLRTKQSDEKKPQPSETTKSTNDSNTNFKHTKAVT
KIKWHPSLDNKVATTSLDGKIIVWEVTSNNSLTSKQCFTEHHEGIKDLKW
NTDGSSFLTASFDKTCKIWDLVTGVCKEDIKFDDLLTSAIYHPEDANIFL
VGTLSSGIQAMDIKEKKIIKKYKSFFGQVQDMMFLPDRTTFLSCAEAVKR
NSLDKTIMAWDFKTGAVLSNQIYPEPYTCSSLKLHPNQRNFLAQSSAGYI
AIFDTEKPWRLNRRKRFESHQVTGSKVDFDFDFTGFKLYSGDITGCVYTF
DWFSSKVNKVQKIFDSPCVSLACHPKINSMLCVGSWEGNVEIIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004311XLOC_004311Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007636TCONS_00007636Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 260..301
e-value: 250.0
score: 1.8
coord: 304..344
e-value: 68.0
score: 5.4
coord: 215..254
e-value: 250.0
score: 1.8
coord: 165..211
e-value: 120.0
score: 4.0
coord: 36..75
e-value: 3.5E-5
score: 33.2
coord: 81..120
e-value: 4.7E-7
score: 39.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 87..120
e-value: 4.5E-5
score: 24.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 88..121
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 42..84
score: 11.712
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 34..72
e-value: 4.4E-6
score: 25.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 214..343
e-value: 3.5E-13
score: 48.9
NoneNo IPR availableGENE3D1.10.10.670coord: 73..132
e-value: 2.1E-13
score: 49.5
NoneNo IPR availableGENE3D2.80.10.50coord: 133..213
e-value: 1.6E-8
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 62..76
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 42..263
score: 21.173
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 42..342

Blast
[Close]
BLAST of TCONS_00007636-protein vs. Swiss-Prot (Human)
Match: WDR25 (WD repeat-containing protein 25 OS=Homo sapiens GN=WDR25 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 5.651e-59
Identity = 120/373 (32.17%), Postives = 189/373 (50.67%), Query Frame = 0 
Query:    9 VKPYVPKRLRTKQS-----------------DEKKPQPSETTKSTND-----SNTNFK--------------HTKAVTKIKWHPSLD--NKVATTSLDGKIIVWE-VTSNNSLTSKQCFTEHHEGIKDLKWNTDGSSFLTASFDKTCKIWDLVTGVCKEDIKFDDLLTSAIYHPEDANIFLVGTLSSGIQAMDIKEKKIIKKYKSFFGQVQDMMFLPDRTTFLSCAEAVKRNSLDKTIMAWDFKTGAVLSNQIYPEPYTCSSLKLHPNQRNFLAQSSAGYIAIFDTEKPWRLNRRKRFESHQVTGSKVDFDFDFTGFKLYSGDITGCVYTFDWFSSKVNKVQKIFDSPCVSLACHPKINSMLCVGSWEGNVEI 342
            V PY P+RLR +Q+                   + P P       ++      N+++K              H   V  I+W P L   + + +TS+D    VW  V S + L   Q ++ H E ++  +W   G   L+  FD    + DL TG      + D  +T+  +HP+D NIFL G  SS ++A DI+  K+++ YK+   Q  D++FL + + FLS  +A  R+S D+TI+AWDF+T A +SNQI+ E +TC SL LHP +  FLAQ++  Y+A+F T  P+R++RR+R+E H+V G  V  +    G  L +G   G V  + + ++      +     CV    HP + S+L   SW G+++I
Sbjct:  173 VVPYTPRRLRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCL---QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKI 542
The following BLAST results are available for this feature:
BLAST of TCONS_00007636-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR255.651e-5932.17WD repeat-containing protein 25 OS=Homo sapiens GN... [more]
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