TCONS_00007636 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007636
Unique Name	TCONS_00007636
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1198

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000078:714472..718692-
coding sequence from alignment at sc0000078:714472..718692-

transcript sequence

>TCONS_00007636 ID=TCONS_00007636|Name=TCONS_00007636|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TTATAGTTCTAAAAAATGAATTATGAAAAGAAGTCAAAATCAAGAGGTAA
AACCATATGTACCCAAACGATTACGAACTAAGCAGTCAGATGAAAAGAAA
CCACAACCTTCTGAGACAACAAAATCGACAAACGATTCAAACACAAATTT
CAAACATACAAAAGCAGtaactaaaataaaatggcaTCCTAGTCTGGACA
ACAAAGTTGCTACGACCAGTCTAGATGGAAAGATCATTGTTTGGGAAGTA
ACAAGTAATAATTCTCTAACCTCAAAACAATGTTTTACTGAGCATCATGA
AGGAATCAAAGATTTGAAGTGGAATACAGATGGCTCATCCTTTCTGACAG
CAAGTTTCGATAAAACCTGTAAAATCTGGGATCTTGTCACAGGCGTTTGC
AAAGAAGACATTAAGTTCGACgatttgctgacatcagcaattTACCATCC
GGAAGATGCAAACATTTTTCTTGTTGGAACTTTGTCTTCAGGAATTCAAG
CCATGGATATAAAAGAAAAGAAGATTATCAAGAAGTATAAATCATTTTTC
GGACAAGTTCAAGACATGATGTTTCTACCGGACAGAACAACCTTTTTATC
ATGTGCAGAAGCTGTGAAAAGGAACTCTCTGGATAAAACCATCATGGCGT
GGGACTTCAAAACTGGTGCTGTGTTATCCAATCAGATCTACCCGGAACCG
TACACGTGTTCATCGTTAAAACTTCATCCAAACCAACGCAATTTTCTCGC
ACAATCATCAGCAGGGTACATTGCAATCTTTGATACAGAAAAACCGTGGC
GCTTGAACCGACGGAAAAGGTTTGAGAGTCATCAGGTCACTGGTTCCAAA
GTGGATTTTGATTTCGATTTCACTGGATTCAAATTATATTCAGGGGACAT
CACAGGTTGTGTGTATACATTTGATTGGTTTTCGTCTAAAGTAAACAAGG
TCCAAAAGATATTTGATTCACCTTGCGTTTCGCTGGCCTGTCATCCTAAG
ATAAACTCGATGTTATGTGTTGGATCTTGGGAAGGGAATGTGGAAATTAT
AGTTTGATTTACCTCGTGTTTTGGTAGACTGCGTCGTCCTTAAGATAAAC
AATCGGTATGTGAATCTATCCGGAAGAGAAGCAATAAAATCATCACATTG
AACCTTCAATCACATGCAGggaaaatttcaggaaagtttACATCCCTG

Run BLAST on NCBI

protein sequence of TCONS_00007636-protein

>TCONS_00007636-protein ID=TCONS_00007636-protein|Name=TCONS_00007636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MKRSQNQEVKPYVPKRLRTKQSDEKKPQPSETTKSTNDSNTNFKHTKAVT
KIKWHPSLDNKVATTSLDGKIIVWEVTSNNSLTSKQCFTEHHEGIKDLKW
NTDGSSFLTASFDKTCKIWDLVTGVCKEDIKFDDLLTSAIYHPEDANIFL
VGTLSSGIQAMDIKEKKIIKKYKSFFGQVQDMMFLPDRTTFLSCAEAVKR
NSLDKTIMAWDFKTGAVLSNQIYPEPYTCSSLKLHPNQRNFLAQSSAGYI
AIFDTEKPWRLNRRKRFESHQVTGSKVDFDFDFTGFKLYSGDITGCVYTF
DWFSSKVNKVQKIFDSPCVSLACHPKINSMLCVGSWEGNVEIIV

Run BLAST on NCBI

transcript from alignment at sc0000078:714472..718692-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007636 ID=TCONS_00007636|Name=TCONS_00007636|organism=Clytia hemisphaerica|type=transcript|length=4221bp|location=Sequence derived from alignment at sc0000078:714472..718692- (Clytia hemisphaerica)
TTATAGTTCTAAAAAATGAATTATGAAAAGAAGTCAAAATCAAGAGGTAA
AACCATATGTACCCAAACGATTACGAACTAAGCAGTCAGATGAAAAGAAA
CCACAACCTTCTGAGACAACAAAATCGACAAACGATTCAAACACAAATTT
CAAACATACAAAAGCAGTAACTAAAATAAAATGGCATCCTAGTCTGGACA
ACAAAGTTGCTACGACCAGTCTAGATGGAAAGATCATTGTTTGGGAAGTA
ACAAGTAATAATTCTCTAACCTCAAAACAATGTTTTACTGAGCATCATGA
AGGAATCAAAGATTTGAAGTGGAATACAGATGGCTCATCCTTTCTGACAG
CAAGTTTCGATAAAACCTGTAAAATCTGGGATCTTGTCACAGGTACATTA
TCTTATATTTTCATTGGCGTATTTTCCCCGTCTTATTTGTTAAGAAAGAT
AAATCCTTGAAATGATAAATCCATCAGCGCTATACGCCAACATGGGCAGA
CCTTCTTACGGAGCCTTAAGAGTGACTGGCTCCATGCGCCGATTCATCTA
TAAATTTTTTTACTTCCTACACTCTTTTTTCTCAGGCGTTTGCAAAGAAG
ACATTAAGTTCGACGATTTGCTGACATCAGCAATTTACCATCCGGAAGAT
GCAAACATTTTTCTTGTTGGAACTTTGTCTTCAGGAATTCAAGCCATGGA
TATAAAAGAAAAGAAGGTGGGGAATTTAACATAAGGAATTATTTTTATTG
AAGGAATACACCTTTTCGGGCGTAGTCGCGCGGTCAGGTGCGTGCCACTT
TATTATTTAATTATCCTGCTAAACTCGATCCCTAGGTGCGAAAAAAAGAC
TGGGACGGTTTTAGGGTGGTAAAACGAACAAAAAATATCCACGCGGCAAT
TTGCGGCTACGGTCGAAAAGGTGTATTATTTTTATTGATTTCTAGCCAGG
TACAATCTTTTTTATAAAATGAAGATATATTTTAGGCTTGACTGTTCAAA
CCCTTTGACTCTGCCTCCTTGCATACTATACGCAATAGATAGATTTAGGG
AAATGCATACGGGTTAAAGAATATGCTTATAACTTTTGAACTTGAAGTCT
NTGCCCAATGGATTTAGGGAAATGCATACGGGTTAAAGAATATGCTTATA
ACTTTTGAACTTCAAGTCTTTAGAATAAAGGTTGTACCATTTCGGAAAGC
TTATTTGCCCTTTTTGGAGAAAACGATAATGAAATGCGCTTCTGGTTGCC
GAACTTGCATAATCCTATCTCAAATAAAAGACATATCTTAAACTTCGACA
TTGCGCAAAAACCTTAATTTTGCGCAGTTCTGTGACAAAATTTCACGCTT
TTTAAAAGAAAGGTTAGATGCCACACGAAAAGAAAAACCTTTTGCTGGGC
AAAACCTTGGACAAGTGATTTTAATTGTTCTCTTTAACGACACGTGGTTC
GCGCAATGTTTATATTTTGCTACTTTTATGTACCTTTAAAAGCTTTTGAG
ATGGAGTTTTTATTAAGTTAATTTCGCCTAGCAGTATTAGTGACACTACT
TTGCTTACAATCAAAGTTTTGGCTGCCGTGCTGCCCAGACATAGCTTCAG
CCAGGTTTCTAGCTCCCCCCAACAAAGTAAGGTCCCTCCAACCATTTAGC
TCCCCCCAAAAAAATTGCCTTGTGCTAGGGCCCCTAACACAAACAAAAAC
ATTGTTCTCCCGCCCCCGTAGAGAGAAGTCACTAAATTTTACTTGTATTA
ATATTTATGTTTACAAATCTTTTGCTTTTTATATTTGATTTAATAGTAAG
ATAAGTGATCTTTTGAAATAAGCTGGACAGCCCCCAGAGTCTCAGTCAGT
TCATCTAGCCGCCCCCCACAATCTAGGTCCCCCCAAAATATTTTGGTAAT
TTTAGCCCCCAGGTTCTTTAAAGGGCAAAATATTTCTTAGCCCCCCCCAA
AAAAAAAAGTAAGGGGGCTTAAGCTATGCCAGAGCTTGCCCCGTGTACCC
ATTAAAATGTCAAGAAAAAAATTGAAATAAAAACTAAAAATTTCAATTTC
CCATCAGATTATCAAGAAGTATAAATCATTTTTCGGACAAGTTCAAGACA
TGATGTTTCTACCGGACAGAACAACCTTTTTATCATGTGCAGAAGCTGTG
AAAAGGAACTCTCTGGATAAAACCATCATGGCGTGGGACTTCAAAACTGG
TGCTGTGTTATCCAATCAGATCTACCCGGTAAGGTTATACTCAAATTCTA
TAAGTTTCACAGCCAAATCCTTTCCTTCTCAGAAGGGTTGCTGTCTAACC
TGTGTTCAAAAAGGATATTTTCATCCATACTCAGCAAAATTGGAAAATCT
CGGTTAATTAATTGTGTAAAAATTGAAAATCTTTATCATTTGAATCGTTT
TGTTTGAGTTATCATTCGTAGTATAATGGTATTTGGTACTCAGATATTTA
TAACTCCATATTGGGCTTTTCCAGAAAAAAATTGAATATGGGGGGGTGGA
GACTAACTCATATTGGATGAAACAACCTTTCCAATTTCTTACCAGGAACC
GTACACGTGTTCATCGTTAAAACTTCATCCAAACCAACGCAATTTTCTCG
CACAATCATCAGCAGGGTACATTGCAATCTTTGATACAGAAAAACCGTGG
CGCTTGAACCGACGGAAAAGGTTTGAGAGTCATCAGGTCAGTATCATTAT
TAAATGTTTTAACACATCAGTGTGTTGGCTATATCTTATTATCATTAAAG
AAAAAAGAAAACTCAGACACTGTAACACTGTACCAGAGTGTATCTCACGT
TTATCACTTTGTAGTACACTCTGTCGCAGCGGTCTGTTTGAAAAACTCAA
ATGAGAAAAGATAATGACAACAGACCCTCTATGGCAATGAATTTTGAAAT
TAGCCGTAGAGGGTCTGTCTGATTTGAGATTTTCCGAACCGACCGCTGCG
ATGGAGCGCGGGTGAGATAGGACAGACAACGATAGAAGTGTTTCTATTTA
TAAATCATACTTCATCGCAGATGTTTCTCTACTGGAATATATTTATCAAA
CAGATAATGCGCACAGAGTGTACTACGAAACAATAAACGTGAAATACACT
CGAGATACACTCTGGTACAGTGTAACTCGTACCTTATCCTTTAGTAAAGA
TTTTTATTAATCTGATAGCACTCACGATCACGAAAGTTCGTATCACGCAT
GAAGTTTTCTCTGTAATATATTCATGTATCACGTCAATAAAAGGCGCAGT
AGTGTAGTGGTTATCAATCTTGACTTCCGTGCTGGAGGTCAGGGTTCGAT
TCACACTCGGTGCTGCGATTCACTTGGCAAGTGAATGTATCTTGGCCCGG
GTCAACCCATACCATGTGAGGGGAATAGGGTACCATCACTCTGATACAAG
AGTATGGGGAGATATGCCGGACATTGAATGTGGTGTGGTGNTGAATGTAC
CTTGGCCCGGGACAACCCATACCATGTGAGAGGAATAGGGTACCATCACT
CTGATACAAGAGTATGGGGAGATATGCCGGATATTGAATGTGGTGTGGTG
ATGGTACTCACATGTTCAGTACCTGCAAGAACGCAAGGTTCTCCCGTACT
GTATGAGTATCATCATTGATACAGCGCGGCTCTGATGAGAGTAGGAAACT
ATCCCGGGATAGGGCCCTGTCCGATGATATCGGAGGGTCCACTTCTCTCT
TCTCTTCGTATCACGTCAATCGCAGTAAAATCAAAAAGGAATGCGATTGA
CTCTGAGTACGAGATTGTATTTTACCTACTTTGGATGTAAAGAGCTCGTA
TGTCTCAAGTTTTTGCTTCAATTATTTTGGAAATTAACCTCTCTTTTTAA
CTTCACAGGTCACTGGTTCCAAAGTGGATTTTGATTTCGATTTCACTGGA
TTCAAATTATATTCAGGGGACATCACAGGTTGTGTGTATACATTTGATTG
GTTTTCGTCTAAAGTAAACAAGGTCCAAAAGATATTTGATTCACCTTGCG
TTTCGCTGGCCTGTCATCCTAAGATAAACTCGATGTTATGTGTTGGATCT
TGGGAAGGGAATGTGGAAATTATAGTTTGATTTACCTCGTGTTTTGGTAG
ACTGCGTCGTCCTTAAGATAAACAATCGGTATGTGAATCTATCCGGAAGA
GAAGCAATAAAATCATCACATTGAACCTTCAATCACATGCAGGGAAAATT
TCAGGAAAGTTTACATCCCTG

Coding sequence (CDS) from alignment at sc0000078:714472..718692-

>TCONS_00007636 ID=TCONS_00007636|Name=TCONS_00007636|organism=Clytia hemisphaerica|type=CDS|length=5175bp|location=Sequence derived from alignment at sc0000078:714472..718692- (Clytia hemisphaerica)
GTCACTGGTTCCAAAGTGGATTTTGATTTCGATTTCACTGGATTCAAATT
ATATTCAGGGGACATCACAGGTTGTGTGTATACATTTGATTGGTTTTCGT
CTAAAGTAAACAAGGTCCAAAAGATATTTGATTCACCTTGCGTTTCGCTG
GCCTGTCATCCTAAGATAAACTCGATGTTATGTGTTGGATCTTGGGAAGG
GAATGTGGAAATTATAGTTTGAGAACCGTACACGTGTTCATCGTTAAAAC
TTCATCCAAACCAACGCAATTTTCTCGCACAATCATCAGCAGGGTACATT
GCAATCTTTGATACAGAAAAACCGTGGCGCTTGAACCGACGGAAAAGGTT
TGAGAGTCATCAGATTATCAAGAAGTATAAATCATTTTTCGGACAAGTTC
AAGACATGATGTTTCTACCGGACAGAACAACCTTTTTATCATGTGCAGAA
GCTGTGAAAAGGAACTCTCTGGATAAAACCATCATGGCGTGGGACTTCAA
AACTGGTGCTGTGTTATCCAATCAGATCTACCCGGCGTTTGCAAAGAAGA
CATTAAGTTCGACGATTTGCTGACATCAGCAATTTACCATCCGGAAGATG
CAAACATTTTTCTTGTTGGAACTTTGTCTTCAGGAATTCAAGCCATGGAT
ATAAAAGAAAAGAAGATGAAAAGAAGTCAAAATCAAGAGGTAAAACCATA
TGTACCCAAACGATTACGAACTAAGCAGTCAGATGAAAAGAAACCACAAC
CTTCTGAGACAACAAAATCGACAAACGATTCAAACACAAATTTCAAACAT
ACAAAAGCAGTAACTAAAATAAAATGGCATCCTAGTCTGGACAACAAAGT
TGCTACGACCAGTCTAGATGGAAAGATCATTGTTTGGGAAGTAACAAGTA
ATAATTCTCTAACCTCAAAACAATGTTTTACTGAGCATCATGAAGGAATC
AAAGATTTGAAGTGGAATACAGATGGCTCATCCTTTCTGACAGCAAGTTT
CGATAAAACCTGTAAAATCTGGGATCTTGTCACAGGTCACTGGTTCCAAA
GTGGATTTTGATTTCGATTTCACTGGATTCAAATTATATTCAGGGGACAT
CACAGGTTGTGTGTATACATTTGATTGGTTTTCGTCTAAAGTAAACAAGG
TCCAAAAGATATTTGATTCACCTTGCGTTTCGCTGGCCTGTCATCCTAAG
ATAAACTCGATGTTATGTGTTGGATCTTGGGAAGGGAATGTGGAAATTAT
AGTTTGAGAACCGTACACGTGTTCATCGTTAAAACTTCATCCAAACCAAC
GCAATTTTCTCGCACAATCATCAGCAGGGTACATTGCAATCTTTGATACA
GAAAAACCGTGGCGCTTGAACCGACGGAAAAGGTTTGAGAGTCATCAGAT
TATCAAGAAGTATAAATCATTTTTCGGACAAGTTCAAGACATGATGTTTC
TACCGGACAGAACAACCTTTTTATCATGTGCAGAAGCTGTGAAAAGGAAC
TCTCTGGATAAAACCATCATGGCGTGGGACTTCAAAACTGGTGCTGTGTT
ATCCAATCAGATCTACCCGGCGTTTGCAAAGAAGACATTAAGTTCGACGA
TTTGCTGACATCAGCAATTTACCATCCGGAAGATGCAAACATTTTTCTTG
TTGGAACTTTGTCTTCAGGAATTCAAGCCATGGATATAAAAGAAAAGAAG
ATGAAAAGAAGTCAAAATCAAGAGGTAAAACCATATGTACCCAAACGATT
ACGAACTAAGCAGTCAGATGAAAAGAAACCACAACCTTCTGAGACAACAA
AATCGACAAACGATTCAAACACAAATTTCAAACATACAAAAGCAGTAACT
AAAATAAAATGGCATCCTAGTCTGGACAACAAAGTTGCTACGACCAGTCT
AGATGGAAAGATCATTGTTTGGGAAGTAACAAGTAATAATTCTCTAACCT
CAAAACAATGTTTTACTGAGCATCATGAAGGAATCAAAGATTTGAAGTGG
AATACAGATGGCTCATCCTTTCTGACAGCAAGTTTCGATAAAACCTGTAA
AATCTGGGATCTTGTCACAGGTCACTGGTTCCAAAGTGGATTTTGATTTC
GATTTCACTGGATTCAAATTATATTCAGGGGACATCACAGGTTGTGTGTA
TACATTTGATTGGTTTTCGTCTAAAGTAAACAAGGTCCAAAAGATATTTG
ATTCACCTTGCGTTTCGCTGGCCTGTCATCCTAAGATAAACTCGATGTTA
TGTGTTGGATCTTGGGAAGGGAATGTGGAAATTATAGTTTGAGAACCGTA
CACGTGTTCATCGTTAAAACTTCATCCAAACCAACGCAATTTTCTCGCAC
AATCATCAGCAGGGTACATTGCAATCTTTGATACAGAAAAACCGTGGCGC
TTGAACCGACGGAAAAGGTTTGAGAGTCATCAGATTATCAAGAAGTATAA
ATCATTTTTCGGACAAGTTCAAGACATGATGTTTCTACCGGACAGAACAA
CCTTTTTATCATGTGCAGAAGCTGTGAAAAGGAACTCTCTGGATAAAACC
ATCATGGCGTGGGACTTCAAAACTGGTGCTGTGTTATCCAATCAGATCTA
CCCGGCGTTTGCAAAGAAGACATTAAGTTCGACGATTTGCTGACATCAGC
AATTTACCATCCGGAAGATGCAAACATTTTTCTTGTTGGAACTTTGTCTT
CAGGAATTCAAGCCATGGATATAAAAGAAAAGAAGATGAAAAGAAGTCAA
AATCAAGAGGTAAAACCATATGTACCCAAACGATTACGAACTAAGCAGTC
AGATGAAAAGAAACCACAACCTTCTGAGACAACAAAATCGACAAACGATT
CAAACACAAATTTCAAACATACAAAAGCAGTAACTAAAATAAAATGGCAT
CCTAGTCTGGACAACAAAGTTGCTACGACCAGTCTAGATGGAAAGATCAT
TGTTTGGGAAGTAACAAGTAATAATTCTCTAACCTCAAAACAATGTTTTA
CTGAGCATCATGAAGGAATCAAAGATTTGAAGTGGAATACAGATGGCTCA
TCCTTTCTGACAGCAAGTTTCGATAAAACCTGTAAAATCTGGGATCTTGT
CACAGGTCACTGGTTCCAAAGTGGATTTTGATTTCGATTTCACTGGATTC
AAATTATATTCAGGGGACATCACAGGTTGTGTGTATACATTTGATTGGTT
TTCGTCTAAAGTAAACAAGGTCCAAAAGATATTTGATTCACCTTGCGTTT
CGCTGGCCTGTCATCCTAAGATAAACTCGATGTTATGTGTTGGATCTTGG
GAAGGGAATGTGGAAATTATAGTTTGAGAACCGTACACGTGTTCATCGTT
AAAACTTCATCCAAACCAACGCAATTTTCTCGCACAATCATCAGCAGGGT
ACATTGCAATCTTTGATACAGAAAAACCGTGGCGCTTGAACCGACGGAAA
AGGTTTGAGAGTCATCAGATTATCAAGAAGTATAAATCATTTTTCGGACA
AGTTCAAGACATGATGTTTCTACCGGACAGAACAACCTTTTTATCATGTG
CAGAAGCTGTGAAAAGGAACTCTCTGGATAAAACCATCATGGCGTGGGAC
TTCAAAACTGGTGCTGTGTTATCCAATCAGATCTACCCGGCGTTTGCAAA
GAAGACATTAAGTTCGACGATTTGCTGACATCAGCAATTTACCATCCGGA
AGATGCAAACATTTTTCTTGTTGGAACTTTGTCTTCAGGAATTCAAGCCA
TGGATATAAAAGAAAAGAAGATGAAAAGAAGTCAAAATCAAGAGGTAAAA
CCATATGTACCCAAACGATTACGAACTAAGCAGTCAGATGAAAAGAAACC
ACAACCTTCTGAGACAACAAAATCGACAAACGATTCAAACACAAATTTCA
AACATACAAAAGCAGTAACTAAAATAAAATGGCATCCTAGTCTGGACAAC
AAAGTTGCTACGACCAGTCTAGATGGAAAGATCATTGTTTGGGAAGTAAC
AAGTAATAATTCTCTAACCTCAAAACAATGTTTTACTGAGCATCATGAAG
GAATCAAAGATTTGAAGTGGAATACAGATGGCTCATCCTTTCTGACAGCA
AGTTTCGATAAAACCTGTAAAATCTGGGATCTTGTCACAGGTCACTGGTT
CCAAAGTGGATTTTGATTTCGATTTCACTGGATTCAAATTATATTCAGGG
GACATCACAGGTTGTGTGTATACATTTGATTGGTTTTCGTCTAAAGTAAA
CAAGGTCCAAAAGATATTTGATTCACCTTGCGTTTCGCTGGCCTGTCATC
CTAAGATAAACTCGATGTTATGTGTTGGATCTTGGGAAGGGAATGTGGAA
ATTATAGTTTGAGAACCGTACACGTGTTCATCGTTAAAACTTCATCCAAA
CCAACGCAATTTTCTCGCACAATCATCAGCAGGGTACATTGCAATCTTTG
ATACAGAAAAACCGTGGCGCTTGAACCGACGGAAAAGGTTTGAGAGTCAT
CAGATTATCAAGAAGTATAAATCATTTTTCGGACAAGTTCAAGACATGAT
GTTTCTACCGGACAGAACAACCTTTTTATCATGTGCAGAAGCTGTGAAAA
GGAACTCTCTGGATAAAACCATCATGGCGTGGGACTTCAAAACTGGTGCT
GTGTTATCCAATCAGATCTACCCGGCGTTTGCAAAGAAGACATTAAGTTC
GACGATTTGCTGACATCAGCAATTTACCATCCGGAAGATGCAAACATTTT
TCTTGTTGGAACTTTGTCTTCAGGAATTCAAGCCATGGATATAAAAGAAA
AGAAGATGAAAAGAAGTCAAAATCAAGAGGTAAAACCATATGTACCCAAA
CGATTACGAACTAAGCAGTCAGATGAAAAGAAACCACAACCTTCTGAGAC
AACAAAATCGACAAACGATTCAAACACAAATTTCAAACATACAAAAGCAG
TAACTAAAATAAAATGGCATCCTAGTCTGGACAACAAAGTTGCTACGACC
AGTCTAGATGGAAAGATCATTGTTTGGGAAGTAACAAGTAATAATTCTCT
AACCTCAAAACAATGTTTTACTGAGCATCATGAAGGAATCAAAGATTTGA
AGTGGAATACAGATGGCTCATCCTTTCTGACAGCAAGTTTCGATAAAACC
TGTAAAATCTGGGATCTTGTCACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004311	XLOC_004311	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007636-protein	TCONS_00007636-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078	supercontig	sc0000078:714472..718692 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.9175	31.658	31.5996	26.5443	12.868	10.3214	8.486	7.12413	9.46166	6.8147	6.65086	5.16041	2.91062	2.79972	4.76646	5.72721	7.32475	6.76239	0.99146	1.79566	4.09264	3.95866	13.2029	11.4424	7.77994	7.45901	2.60697	1.62734	6.48993	6.89617

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00007636 vs. Swiss-Prot (Human)
Match: WDR25 (WD repeat-containing protein 25 OS=Homo sapiens GN=WDR25 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.768e-51
Identity = 120/373 (32.17%), Postives = 189/373 (50.67%), Query Frame = 2

Query:   47 VKPYVPKRLRTKQS-----------------DEKKPQPSETTKSTND-----SNTNFK--------------HTKAVTKIKWHPSLD--NKVATTSLDGKIIVWE-VTSNNSLTSKQCFTEHHEGIKDLKWNTDGSSFLTASFDKTCKIWDLVTGVCKEDIKFDDLLTSAIYHPEDANIFLVGTLSSGIQAMDXXXXXXXXXXXSFFGQVQDMMFLPDRTTFLSCAEAVKRNSLDKTIMAWDFKTGAVLSNQIYPEPYTCSSLKLHPNQRNFLAQSSAGYIAIFDTEKPWRLNRRKRFESHQVTGSKVDFDFDFTGFKLYSGDITGCVYTFDWFSSKVNKVQKIFDSPCVSLACHPKINSMLCVGSWEGNVEI 1048
            V PY P+RLR +Q+                   + P P       ++      N+++K              H   V  I+W P L   + + +TS+D    VW  V S + L   Q ++ H E ++  +W   G   L+  FD    + DL TG      + D  +T+  +HP+D NIFL G  SS ++A DI+  K+++ YK+   Q  D++FL + + FLS  +A  R+S D+TI+AWDF+T A +SNQI+ E +TC SL LHP +  FLAQ++  Y+A+F T  P+R++RR+R+E H+V G  V  +    G  L +G   G V  + + ++      +     CV    HP + S+L   SW G+++I
Sbjct:  173 VVPYTPRRLRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCL---QTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKI 542

The following BLAST results are available for this feature:

BLAST of TCONS_00007636 vs. Swiss-Prot (Human)

BLAST of TCONS_00007636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR25	1.768e-51	32.17	WD repeat-containing protein 25 OS=Homo sapiens GN...	[more]

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TCONS_00007636 (transcript) - C. hemisphaerica