TCONS_00007657-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007657-protein
Unique NameTCONS_00007657-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length116

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007657-protein ID=TCONS_00007657-protein|Name=TCONS_00007657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MTKARLESKTKTSESSNAKPSPSKTRKRKSRRRESYKNYIFKVLERNYPG
QEISKSSLKVMNSFILDIFNGVANEASKLAHMNKSSTVTTYEIQEAVKLL
LPGELAKTAIPMDSKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004330XLOC_004330Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007657TCONS_00007657Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 36..54
score: 45.86
coord: 55..75
score: 43.08
coord: 94..107
score: 81.02
coord: 77..94
score: 58.47
IPR000558Histone H2BSMARTSM00427h2b3coord: 26..114
e-value: 4.3E-27
score: 106.0
NoneNo IPR availableGENE3D1.10.20.10coord: 2..115
e-value: 9.2E-33
score: 112.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 8..99
e-value: 6.8E-8
score: 32.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 8..113

Blast
[Close]
BLAST of TCONS_00007657-protein vs. Swiss-Prot (Human)
Match: H2B1L (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 7.120e-30
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 0 
Query:   26 RKRKSRRRESYKNYIFKVLERNYPGQEISKSSLKVMNSFILDIFNGVANEASKLAHMNKSSTVTTYEIQEAVKLLLPGELAKTAIPMDSK 115
            +KRK  R+ESY  Y++KVL++ +P   IS  ++ +MNSF+ DIF  +A+EAS+LAH NK ST+T+ EIQ AV+LLLPGELAK A+   +K
Sbjct:   28 KKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 117
The following BLAST results are available for this feature:
BLAST of TCONS_00007657-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B1L7.120e-3054.44Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
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