TCONS_00007657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007657
Unique NameTCONS_00007657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007657 ID=TCONS_00007657|Name=TCONS_00007657|organism=Clytia hemisphaerica|type=transcript|length=612bp
AGAGAGAGTTTCGATCGACTTGTGAATAACTGTAATCTGTTAACCCTTTT
GAATACCACGCGCCAGTCCGAAAAGATTTAATTTACGGAACGCAAATTAA
CCGAATACGATATTTTTCCGAAagcgtaaataaattcattgatCTGCCAG
TTTATTAATCTTCCTTCACTTCAGAGTCTGTTGCATTCGTTTCAGAAAAA
TTACTTTTGGTGTCTAAACTGTTTACAGCTTGCTGTCCATGGGTATGGCT
GTCTTTGCAAGTTCACCAGGCAATAACAACTTGACTGCTTCTTGGATCTC
GTACGTTGTAACAGTACTGCTTTTATTCATATGTGCCAGCTTCGATGCTT
CATTCGCTACACCGTTGAAAATGTCCAGGATGAAAGAATTCATCACTTTC
AAGGAAGATTTGGAAATCTCTTGTCCAGGATAATTTCTCTCCAATACTTT
GAAAATGTAGTTCTTGTAACTTTCACGTCGTCTACTTTTTCGTTTTCGTG
TTTTTGAGGGGGAGGGCTTTGCATTTGAAGATTCTGATGTTTTCGTTTTG
CTTTCAAGACGTGCTTTCGTCATTTTGTAACTTCTGGGACTTCAAAAAAG
CTTTGTGTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00007657-protein

>TCONS_00007657-protein ID=TCONS_00007657-protein|Name=TCONS_00007657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MTKARLESKTKTSESSNAKPSPSKTRKRKSRRRESYKNYIFKVLERNYPG
QEISKSSLKVMNSFILDIFNGVANEASKLAHMNKSSTVTTYEIQEAVKLL
LPGELAKTAIPMDSKL
Run BLAST on NCBI

transcript from alignment at sc0000078:225277..225888

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007657 ID=TCONS_00007657|Name=TCONS_00007657|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000078:225277..225888 (Clytia hemisphaerica)
AGAAACACAAAGCTTTTTTGAAGTCCCAGAAGTTACAAAATGACGAAAGC
ACGTCTTGAAAGCAAAACGAAAACATCAGAATCTTCAAATGCAAAGCCCT
CCCCCTCAAAAACACGAAAACGAAAAAGTAGACGACGTGAAAGTTACAAG
AACTACATTTTCAAAGTATTGGAGAGAAATTATCCTGGACAAGAGATTTC
CAAATCTTCCTTGAAAGTGATGAATTCTTTCATCCTGGACATTTTCAACG
GTGTAGCGAATGAAGCATCGAAGCTGGCACATATGAATAAAAGCAGTACT
GTTACAACGTACGAGATCCAAGAAGCAGTCAAGTTGTTATTGCCTGGTGA
ACTTGCAAAGACAGCCATACCCATGGACAGCAAGCTGTAAACAGTTTAGA
CACCAAAAGTAATTTTTCTGAAACGAATGCAACAGACTCTGAAGTGAAGG
AAGATTAATAAACTGGCAGatcaatgaatttatttacgctTTCGGAAAAA
TATCGTATTCGGTTAATTTGCGTTCCGTAAATTAAATCTTTTCGGACTGG
CGCGTGGTATTCAAAAGGGTTAACAGATTACAGTTATTCACAAGTCGATC
GAAACTCTCTCT

Coding sequence (CDS) from alignment at sc0000078:225277..225888

>TCONS_00007657 ID=TCONS_00007657|Name=TCONS_00007657|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000078:225277..225888 (Clytia hemisphaerica)
ATGACGAAAGCACGTCTTGAAAGCAAAACGAAAACATCAGAATCTTCAAA
TGCAAAGCCCTCCCCCTCAAAAACACGAAAACGAAAAAGTAGACGACGTG
AAAGTTACAAGAACTACATTTTCAAAGTATTGGAGAGAAATTATCCTGGA
CAAGAGATTTCCAAATCTTCCTTGAAAGTGATGAATTCTTTCATCCTGGA
CATTTTCAACGGTGTAGCGAATGAAGCATCGAAGCTGGCACATATGAATA
AAAGCAGTACTGTTACAACGTACGAGATCCAAGAAGCAGTCAAGTTGTTA
TTGCCTGGTGAACTTGCAAAGACAGCCATACCCATGGACAGCAAGCTGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004330XLOC_004330Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007657-proteinTCONS_00007657-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007657-exon-sc0000078-1491911889:225277..225888TCONS_00007657-exon-sc0000078-1491911889:225277..225888Clytia hemisphaericaexon
TCONS_00007657-exon-sc0000078-1510915933:225277..225888TCONS_00007657-exon-sc0000078-1510915933:225277..225888Clytia hemisphaericaexon
TCONS_00007657-exon-sc0000078-1575043694:225277..225888TCONS_00007657-exon-sc0000078-1575043694:225277..225888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:225277..225888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0880341	0	0.0996767	0.487591	0	0	0	0	0	0.367559	0.445952	0	0.0585487	0	0	0	0.0660869	0	0	0.097927	0	0.249101	0.100938	0.0917674	28.7336	24.5474	0	0	0	0.099552
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Blast
[Close]
BLAST of TCONS_00007657 vs. Swiss-Prot (Human)
Match: H2B1L (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.571e-23
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = -1 
Query:  229 YIFKVLERNYPGQEISKSSLKVMNSFILDIFNGVANEASKLAHMNKSSTVTTYEIQEAVKLLLPGELAKTAIPMDSK 459
            Y++KVL++ +P   IS  ++ +MNSF+ DIF  +A+EAS+LAH NK ST+T+ EIQ AV+LLLPGELAK A+   +K
Sbjct:   41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 117
The following BLAST results are available for this feature:
BLAST of TCONS_00007657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B1L6.571e-2354.55Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
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