TCONS_00007824-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007824-protein
Unique NameTCONS_00007824-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007824-protein ID=TCONS_00007824-protein|Name=TCONS_00007824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MSQTEALEELSKEDLIKKCQDLLRTNNHLKAELKSCKQKLKLNSSVKSKA
KRMEPNQRPIDFSQYHKKRIALRILYHGWDYCGFASQENTENTVEEQIFI
ALIKGKLIEDRVSANYSRCGRTDKGVSAFGQVIALDVRGRKKEEFCVEPT
KGILEPSDIPYVKALNRLLPLDIRVIAYADVTPDFDARFSCGGRTYKYFF
PASNLDVEVMHEAAQRLLGEHDFRNFCKVDVGNNINHFMRNIVRFHVRRV
QQTGSPRDMCEMEITGRAFLWHQVRCMAAVLFLIGLHHEKPQVIDFLLDI
EKCPKRPQYGIASEIPLILYDCTYENINWVYEKDFNDFNIQRLEEYWVEK
SVQSIGLRTMIDYLHEKIPTDLLCPASCLLTGYAFREYQPLEERNVCGGL
ERHLEKQAVKRIKLEGKYQQQRQKEEASIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004441XLOC_004441Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007824TCONS_00007824Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..39
NoneNo IPR availableGENE3D3.30.70.580coord: 57..183
e-value: 2.4E-34
score: 117.4
NoneNo IPR availableCDDcd02569PseudoU_synth_ScPus3coord: 72..324
e-value: 9.48049E-141
score: 404.745
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 184..323
e-value: 1.8E-31
score: 108.2
IPR001406Pseudouridine synthase I, TruATIGRFAMTIGR00071TIGR00071coord: 69..314
e-value: 2.8E-51
score: 172.4
IPR001406Pseudouridine synthase I, TruAHAMAPMF_00171TruAcoord: 68..324
score: 24.612
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 213..325
e-value: 5.8E-27
score: 94.2
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 66..334

Blast
[Close]
BLAST of TCONS_00007824-protein vs. Swiss-Prot (Human)
Match: PUS3 (tRNA pseudouridine(38/39) synthase OS=Homo sapiens GN=PUS3 PE=1 SV=3)

HSP 1 Score: 358.607 bits (919), Expect = 3.177e-120
Identity = 187/433 (43.19%), Postives = 270/433 (62.36%), Query Frame = 0 
Query:   13 EDLIKKCQDLLRTNNHLKAELKSCKQKLKLNSSVKSKAKRMEPNQRPIDFSQYHKKRIALRILYHGWDYCGFASQENTENTVEEQIFIALIKGKLIEDRVSANYSRCGRTDKGVSAFGQVIALDVR-----GRKKEEFCVEPTKGILEPSDIPYVKALNRLLPLDIRVIAYADVTPDFDARFSCGGRTYKYFFPASNLDVEVMHEAAQRLLGEHDFRNFCKVDVGNNINHFMRNIVRFHVRRVQQTGS------PRDMCEMEITGRAFLWHQVRCMAAVLFLIGLHHEKPQVIDFLLDIEKCPKRPQYGIASEIPLILYDCTYENINWVYEKDFNDFNIQRLEEYWVEKSVQSIGLRTMIDYLHEKIPT-------------------DLLCPASCLLTGYAFREYQPLEERNVCGGLERHLEKQAVKRIKLE 415
            E L+K+ ++L +    LK E    + K K +S+++  +      +R  DFS + ++ +ALRI Y GW Y GFASQENT NT+EE++F AL K +L+E R ++NY RCGRTDKGVSAFGQVI+LD+R     GR  E+F V+         +I Y   LNR+LP DIR++A+A V P F ARFSC  RTY+YFFP ++LD+  M  AAQ+ +G HDFRN CK+DV N + +F R I+   V+ V Q+        P  +C+ E+TG+AFL+HQVRCM A+LFLIG   EKP++ID LL+IEK P++PQY +A E PL+LYDC +EN+ W+Y+++  +FNI  L++ W   +V++  L +M+  L + +P                     ++   S  + G   R Y+PL +R  C GLE  ++   V+R ++E
Sbjct:   12 EKLLKRVRELEQEVQRLKKE----QAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAA-EEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQGL-DTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKCQGLESRIQ-HFVRRGRIE 437
The following BLAST results are available for this feature:
BLAST of TCONS_00007824-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS33.177e-12043.19tRNA pseudouridine(38/39) synthase OS=Homo sapiens... [more]
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