TCONS_00007834-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007834-protein
Unique NameTCONS_00007834-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007834-protein ID=TCONS_00007834-protein|Name=TCONS_00007834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=970bp
MSAPYPGMPPPNSLGHQTVNRPQVPNGLPMNNQQRSNMNQARMPAMSQPP
TYTPQPLTKPINNIASQPRLNAPPALNQIPFGAPTNLRQPTSMPNTQMNG
HQPTNSPVKPGQVVPPASLPNGQMTQQPGLPRGRRPYPTMSAPATLPTTT
QQPSGQRASTQPQTQTMTSQMDRMQLSGQTSPRQPPQTQTQPSRTNQYPQ
MPANSYNQSNTNDQNQLNKRLTVQQSQTFGLNLIEQRNIIPPQPISPPTP
PISEELQRKNAKTKTMRCTFNAVPQTSNLLKQSKLPFGVYIQPFRDDPNI
PIVSSVITRCRSCRSYLNPFVSLIDHRRWQCNMCFRINDIPEELTFDYNN
RQYQDVRKRPELNHASIEFIAPAEYMLRPPQPSCFVIALDVSYNAIGTGY
LRNVCKIIANNLDNLPGDSRTMIGFVTFNSSVQFYSLKANQSQPQMHVVS
DVDDIYLPVPDGLLVNIKENKEMILQLLESLPTSFDKEIDTKCATGAAML
GAKKLVTSVGGRITVFQSCLPNVGPGKLTLRESSNISTNAKDIANLNPTT
DFYKKLALECAGEQIAIDLFILAGQYCDLASMSGVSRYSSGAIHYYPDYH
HTQNQPMVEKFTHDFARYLTRAIGLEAVMRLRCTKGMSINTFHGNFFVRS
TDLLSLPNVNPDHSFGMQIDIEDNLTETSMVAFQAALLYTNTKGERRIRV
HTIALPVTSKLSDIYAYADQEAIVNTLSKLAADRTLMSSLGDAREALMNA
CIDCLKSYKHEVANQKHNSALISPFQLRLLPVNILAMMKNEAFKLGSSVS
LDQRVYSLLEFKWQPIDDALLRIYPRLYPIHELGEPHDESYAGPSILSAS
AERLSRQGIYLMDNGRQLLFFVGRNVSDEFIQQLFNIRTFNELPERMFQI
PELNNDFNKETRKFLDKIRKDKTFNSPLQIIREDTKHRVTFLNNLIEDRT
ESSMSYHEFLQHVQRQINGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004444XLOC_004444Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007834TCONS_00007834Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006895Znf_Sec23_Sec24
IPR006896Sec23/24_trunk_dom
IPR029006ADF-H/Gelsolin-like_dom
IPR007123Gelsolin-like_dom
IPR012990Sec23_24_beta_S
IPR006900Sec23/24_helical_dom
IPR002035VWF_A
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030127COPII vesicle coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0030127 COPII vesicle coat
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 307..343
e-value: 2.0E-12
score: 46.9
IPR006895Zinc finger, Sec23/Sec24-typeSUPERFAMILY82919Zn-finger domain of Sec23/24coord: 297..379
IPR006896Sec23/Sec24, trunk domainPFAMPF04811Sec23_trunkcoord: 380..618
e-value: 1.2E-66
score: 224.7
IPR029006ADF-H/Gelsolin-like domainGENE3D3.40.20.10coord: 825..959
e-value: 6.3E-29
score: 100.0
IPR007123Gelsolin-like domainPFAMPF00626Gelsolincoord: 845..915
e-value: 2.6E-8
score: 33.5
IPR007123Gelsolin-like domainSUPERFAMILY82754C-terminal, gelsolin-like domain of Sec23/24coord: 825..968
NoneNo IPR availableGENE3D2.60.40.1670coord: 608..707
e-value: 1.3E-32
score: 112.3
NoneNo IPR availableGENE3D2.30.30.380coord: 305..362
e-value: 5.0E-17
score: 61.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..213
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 151..299
coord: 623..718
IPR012990Sec23/Sec24 beta-sandwichPFAMPF08033Sec23_BScoord: 624..708
e-value: 1.3E-20
score: 73.8
IPR006900Sec23/Sec24, helical domainPFAMPF04815Sec23_helicalcoord: 719..820
e-value: 8.0E-23
score: 80.1
IPR006900Sec23/Sec24, helical domainSUPERFAMILY81811Helical domain of Sec23/24coord: 719..824
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 382..607
e-value: 1.2E-79
score: 266.5
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 380..622

Blast
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BLAST of TCONS_00007834-protein vs. Swiss-Prot (Human)
Match: SC24A (Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2)

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 369/793 (46.53%), Postives = 556/793 (70.11%), Query Frame = 0 
Query:  185 PPQTQTQPSRTNQYPQMPANSYNQSNTNDQNQLNKRLTVQQSQTFGL---NLIEQRNIIPPQPISPPTPPISEELQRKNAKTKTMRCTFNAVPQTSNLLKQSKLPFGVYIQPFRDDPNIPIV-SSVITRCRSCRSYLNPFVSLIDHRRWQCNMCFRINDIPEELTFDYNNRQYQDVRKRPELNHASIEFIAPAEYMLRPPQPSCFVIALDVSYNAIGTGYLRNVCKIIANNLDNLPGDSRTMIGFVTFNSSVQFYSLKANQSQPQMHVVSDVDDIYLPVPDGLLVNIKENKEMILQLLESLPTSFDKEIDTKCATGAAMLGAKKLVTSVGGRITVFQSCLPNVGPGKLTLRESSNISTNAKDIANLNPTTDFYKKLALECAGEQIAIDLFILAGQYCDLASMSGVSRYSSGAIHYYPDYHHTQNQPMVEKFTHDFARYLTRAIGLEAVMRLRCTKGMSINTFHGNFFVRSTDLLSLPNVNPDHSFGMQIDIEDNLTETSMVAFQAALLYTNTKGERRIRVHTIALPVTSKLSDIYAYADQEAIVNTLSKLAADRTLMSSLGDAREALMNACIDCLKSYKHEVANQKHNSALISPFQLRLLPVNILAMMKNEAFKLGSSVSLDQRVYSLLEFKWQPIDDALLRIYPRLYPIHELGEP-----HDESYAGPSILSASAERLSRQGIYLMDNGRQLLFFVGRNVSDEFIQQLFNIRTFNELPERMFQIPELNNDFNKETRKFLDKIRKDKTFNSPLQIIREDTKHRVTFLNNLIEDRTESSMSYHEFLQHVQRQIN 968
            PP +   PS    + Q P  +         N L   ++    Q  GL   NL+++RN++P  P+ PP P + E++Q+ N   +  RCT  ++PQT  LL ++KLP G+ + PF+D   +P+V SS I RCRSCR+Y+NPFVS +D RRW+CN+C+R+ND+PEE  ++   R Y +  +RPE+ +A+IEF+AP+EYMLRPPQP  ++   DVS+NA+ TGYL +VC+ + +NLD LPG++RT IGF+TF+S++ FY L+ + SQPQM +VSD++D+++P+P+ LLVN+ E+KE++  LL++LP  F K ++T+ A G A+  A KL++  GGR++VFQ+ LP +G G L  RE  N  ++AKDI ++ P+TDFYKKLAL+C+G+Q+A+DLF+L+GQY DLAS+  +SRYS+G+++YYP YHH  N   V+K   +  RYLTR IG EAVMR+RCTKG+SI+TFHGNFFVRSTDLLSLPNVNPD  + +Q+ +E++LT+T +V+FQ+ALLYT++KGERRIRVHT+ LPV S L+D++  AD +AI   L+ +A DR++ +SL DAR+AL+NA ID L +Y+  V + +    L+ PF LRL P+ +LA++K ++F+ G++  LD+R++++ + K QP+   +L  +P LY +  L +       D +   P IL  S E+LSR G +LMD G  L+ +VG+N +  F+ Q+  ++ +  +P+ M  +PEL+   +     F+  +R+ + F   L +IR+++  +  FL N+IEDRTES++SY+EFL H+Q+Q+N
Sbjct:  311 PPSSLNYPSGPQAFTQTPLGA---------NHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDI-HMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQ-PGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSYYEFLLHIQQQVN 1092
The following BLAST results are available for this feature:
BLAST of TCONS_00007834-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC24A0.000e+046.53Protein transport protein Sec24A OS=Homo sapiens G... [more]
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