TCONS_00007914-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007914-protein
Unique NameTCONS_00007914-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1633

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007914-protein ID=TCONS_00007914-protein|Name=TCONS_00007914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1633bp
MKPKGNINENWRVSNENDKISEYAFEEVTEDEFNCVLPSSPNWYCNNILH
SYNGYFAFGGKNACFIFDLKKKPPICTWSMVGATFSIRVTAVSLLSTFED
PSKEPDMLAFSAEDGHLKVVNIANKTTVTEHKKHMAKITSISWTHVNKTT
IISGDEKGVILVWDFVNKICNVWTPLQTMLTYISSSPHSADIAAFGYMNG
NIILGDTKKLNTLHTFKNHINEVCHISWHPFEVDQFVSIAKDKTLRIYST
TDKILQKSFTTPRNIGSRNNSNKHAQQTSKPYFTVLWLDNDRIVSSFPTG
ELLSWDINSGKWKAITNGHNRIIFCLRKDDLTNQLISVSMDRMILIHKKS
NLKVVQRIPTFGGFVYSLSSVPQDPHRFAVGVGDNTIRVWSTGDQADPYN
SASIWHSIKTKVTVIQYHPTKEGIIGFGTEDGHVGCYSSITQKSDVSTSY
HKKTVYALEWGPCSCSKEEQEDEKVKVNCLYSVGGEGMILMHKLGAFNQK
AVDIGALIKKHNHITSPPSRSEIKWHQSYQFVAIGNEDGTIDVFSATHLT
LLGHIQAHKKIINSIDWHHDFTGDLSDCSFWIASGSNEETVCVYDARSIC
LQEKSSIKAITVDTPYQTLTGHSSRITKVKWSPHAIGVLASSSYDGSIQV
WDVKKNEGLGNYRGHLGRVHCVAWSYVSSDVLLSGGEDFCLHRWRYTETK
DKMPPSSKSKQSKTRKKKKKDAPEKDGESKKELIQTDEKLPEESSKPATL
EEASNQQPSQKASQERTTVKDYSSVNGVLSEDGVEFVEQLDGKHRGKKPK
VSLLKLSSIADSKKKELMQEDCINLATYLKAESTKLGSGCEKAGLTPGSE
EHVNLGLYTDRKGVFTMLSTESQNHKESGSIDKYNHLQIWQNSIPAAIEH
AVKNKCLNDSLVALSPLGGYDLWLSTCMKYAEQLEERSNFSMAANYYMMS
GDFNRVINMFKANNFIKEALTFAKSHLPKGDPTLTELYLLWAKRLSNENS
YENAAECYLACGHTDDAITMLSKRNDANAIMTALKVATIYEMTEKCDQLS
TKAVKALLQEQRWSTCFELINERPDLPMINKIQLVVGEILLEYVDRKQFL
TLFLEDTDNHQTHRCFSKVSSEDSSRKSSTDDISILTYMANLLESEFGIT
QNNVLSIEEAPKLQILKSNRKPNDLLYDLITCFVSSLIHLLNKDVTTALK
ELLVGFDLLAGHGFQIILEPIYNTLFPRNQVSFSGIVKNYGNADESQDLN
SLMTNFMAFELQGLLYSTLWKTQDQTCDENENLLRNIKEKYNDENISSIL
HHSSSILLGATHFHYFNLEDQMQSIKERNMELEIKKRLKEHLASKQNAKK
PVKINRNKRLSVEEEVREFLGEIXXXXXXXXXXXRNQVSFSGILKNYGNA
DESQDLNSLMTNFMAFELQGLLYSTLWKTQDQTCDENENLLRNIKEKYND
ENISSILHHSSSILLGATHFHYFNLEDQMQSIKERNMELEIKKRLKEHLA
SKQNAKKPVKINRNKRLSVEEEVREFLGEIVDNVVRSFPTEEELKKTALE
EEMNHVTDALDKIPQYFKDFKFPKVADSLNVMLLICCQHAHVNKNIVTFC
KELLKWMDNQNVEHKSKYVEQMVRNKVLKLSEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004468XLOC_004468Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007914TCONS_00007914Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR011990TPR-like_helical_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1315..1335
NoneNo IPR availableCOILSCoilCoilcoord: 1472..1492
NoneNo IPR availableGENE3D1.10.10.670coord: 648..736
e-value: 7.6E-15
score: 54.1
NoneNo IPR availableGENE3D2.80.10.50coord: 585..647
e-value: 2.3E-14
score: 52.7
NoneNo IPR availableGENE3D2.40.50.140coord: 516..584
e-value: 9.1E-6
score: 24.7
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 209..249
e-value: 0.0013
score: 28.0
coord: 655..695
e-value: 0.0025
score: 27.0
coord: 442..493
e-value: 130.0
score: 3.7
coord: 309..348
e-value: 3.0
score: 14.0
coord: 510..545
e-value: 410.0
score: 0.5
coord: 124..164
e-value: 0.027
score: 23.6
coord: 612..652
e-value: 2.1E-8
score: 43.9
coord: 548..595
e-value: 0.021
score: 24.0
coord: 351..391
e-value: 0.013
score: 24.7
coord: 398..438
e-value: 200.0
score: 2.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 617..652
e-value: 2.5E-5
score: 24.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 619..661
score: 14.719
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 36..159
e-value: 6.2E-10
score: 37.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 160..267
e-value: 7.7E-13
score: 47.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 268..504
e-value: 1.4E-22
score: 79.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 833..1358
e-value: 0.0013
score: 17.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 639..653
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 107..704
score: 22.201
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 41..314
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 513..694
coord: 288..400

Blast
BLAST of TCONS_00007914-protein vs. Swiss-Prot (Human)
Match: GEMI5 (Gem-associated protein 5 OS=Homo sapiens GN=GEMIN5 PE=1 SV=3)

HSP 1 Score: 545.428 bits (1404), Expect = 6.672e-167
Identity = 364/1163 (31.30%), Postives = 575/1163 (49.44%), Query Frame = 0
Query:   36 VLPSSPNWYCNNILHSY-NGYFAFGGKNACFIFDLKK-------KPPI-CTWSMVGATFSIRVTAVSLLSTFEDPSKEPDMLAFSAEDGHLKVVNIANKTTVTEHKKHMAKITSISWTHVNKTTIISGDEKGVILVWDF-VNKICNVWTPLQTMLTYISSSPHSADIAAFGYMNGNIILGD-TKKLNTLHTFKNHINEVCHISWHPFEVDQFVSI-------------------------------AKDKTLRIYSTTDK----ILQKSFTTPRNIGSRNNSNKHAQQTSKPYFTVLWLDND--RIVSSFPTGELLSWDINSGKWK-------AITNG--HNRIIF--C-LRKDDLTNQLISVSMDRMILIHKKSNLKVVQRIPTFGGFVYSLSSVPQDPHRFAVGVGDNTIRVWSTGDQADPYNSASIWHSIKTKVTVIQYHPTKEGIIGFGTEDGHVGCYSSITQKS-DVSTSYHKKTVYALEWGPCSCSKEEQEDEKVKVNCLYSVGGEGMILMHKLGAFNQKAVDIGALIKKHNHITSP-PSRSEIKWHQSYQFVAIGNEDGTIDVFSATHLTLLGHIQAHKKIINSIDWHHDFTGDLSDCSFWIASGSNEETVCVYDARSICLQEKSSIKAITVDTPYQTLTGHSSRITKVKWSPHAIGVLASSSYDGSIQVWDVKKNEGLGNYRGHLGRVHCVAWSYVSSDVLLSGGEDFCLHRWRYTETKDKMPPSSKSKQSKTRKK---------------------------------KKKDAPEKDGESKKELIQTDEKLPEESSKPATLEEASNQQP----SQKASQERTTVKDYSSVNGVLSEDGVEFVEQLDGKHRGKKPKVSLLKLSSIADSKKKELMQEDCINLATYLKAESTKLGSGCEKAGLTPGSEEHVNLGLYTDRKGVFTMLSTESQNHKESGSIDKYNHLQIWQNSIPAAIEHAVKNKCLNDSLVALSPLGGYDLWLSTCMKYAEQLEERSNFSMAANYYMMSGDFNRVINMFKANNFIKEALTFAKSHLPKGDPTLTELYLLWAKRLSNENSYENAAECYLACGHTDDAITMLSKRNDANAIMTALKVATIYEMTEKCDQLSTKAVKALLQEQRWSTCFELINERPDLPMINKIQLVVGEILLEYVDRKQF 1099
             LP SPNWYC     +   G F F  + + F+  +          PP      +VG T   RV+      TF     + ++ A S++DG +K+ ++  KT VTEH  H   I+++ W+   K  I+SGDEKGV+  + F  N   +++   +T+   ++ SPH  D+ A GY +G +++ D +KK   +H  + H +E+  I+W P   +  +SI                               +KD+T+RI+S +      IL+  F   R  G      +      + + T+ W  N   ++VSS   GELL WD+    W+       A + G  H+RI+F  C L+ +D    L+S SMDR +     + L+    +P+ GGF YSL+    D    A+GVGD  IRVW+T    + Y+  + W  +K+KVT + +HPTKEG + FGT+DG VG Y + + K   +S++YHKKTVY L WGP         +       LYS GGEG++L H     + +A DI  LI+  N I    P  +EI W    + +A+GNEDG+I++F   +L L+  IQ H K++N+I WHH+  G   + S+ +ASGSN   + V++ +++   E S    +T+  PY+TL+GH+++IT V WSPH  G L S+SYDG+ QVWD  + E L N+RGH GR+ CVAWS +  D + SG +DFC+H+W  +      PP  K      +K+                                 K+   P ++G S +E     E+   E   P  L  A +++P       +  E++ V   + V  +  E   E  E L  K + +    SLL LS+  D + KE + +DC+ LAT     S +L        ++   EE  +LGL+TDR  ++ M+  E + H E+G  + ++ L +W+  +   ++ A +   L D+LVA++P  GY +WL     +A+QL  +  +  AA++ +        + + K+N+F +EA+  AK+ L   DP L +LYL W   L  +  Y  AA+CYL      DA  +L+K+ DA ++ TA ++A I    E    L+ +  + LL    W    E +     L    ++   + E+L  +++ KQ 
Sbjct:    7 TLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGELVGHTE--RVSGF----TFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPRVKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFC-LTCSPHHEDLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGCYLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKE------RLWLTLHWPSNQPTQLVSSCFGGELLQWDLTQ-SWRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGPPVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHTEISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEH-GSQPELSYLMASGSNNAVIYVHNLKTVI--ESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASYDGTAQVWDALREEPLCNFRGHRGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRPPQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQE----GEEQAREPELPCGLAPAVSREPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLIKKRKAR----SLLPLSTSLDHRSKEELHQDCLVLAT--AKHSRELNED-----VSADVEERFHLGLFTDRATLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHVWLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQELLLANNWVGAQEALQLHESL-QGQRLVFCLLELLSRHLEEKQL 1136          
The following BLAST results are available for this feature:
BLAST of TCONS_00007914-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GEMI56.672e-16731.30Gem-associated protein 5 OS=Homo sapiens GN=GEMIN5... [more]
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