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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007914 ID=TCONS_00007914|Name=TCONS_00007914|organism=Clytia hemisphaerica|type=transcript|length=7798bpRun BLAST on NCBI protein sequence of TCONS_00007914-protein >TCONS_00007914-protein ID=TCONS_00007914-protein|Name=TCONS_00007914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1633bp MKPKGNINENWRVSNENDKISEYAFEEVTEDEFNCVLPSSPNWYCNNILHRun BLAST on NCBI transcript from alignment at sc0000080:417021..432182- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007914 ID=TCONS_00007914|Name=TCONS_00007914|organism=Clytia hemisphaerica|type=transcript|length=15162bp|location=Sequence derived from alignment at sc0000080:417021..432182- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:417021..432182- >TCONS_00007914 ID=TCONS_00007914|Name=TCONS_00007914|organism=Clytia hemisphaerica|type=CDS|length=4902bp|location=Sequence derived from alignment at sc0000080:417021..432182- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007914 vs. Swiss-Prot (Human)
Match: GEMI5 (Gem-associated protein 5 OS=Homo sapiens GN=GEMIN5 PE=1 SV=3) HSP 1 Score: 409.838 bits (1052), Expect = 1.440e-116 Identity = 249/718 (34.68%), Postives = 383/718 (53.34%), Query Frame = 2
Query: 125 LPSSPNWYCNNILHSY-NGYFAFGGKNACFIFDLK----KKPPICTWSMVGATF--SIRVTAVSLLSTFEDPSKEPDMLAFSAEDGHLKVVNIANKTTVTEHKKHMAKITSISWTHVNKTTIISGDEKGVILVWDF-VNKICNVWTPLQTMLTYISSSPHSADIAAFGYMNGNIILGD-TKKLNTLHTFKNHINEVCHISWHPFEVDQFVSI-------------------------------AKDKTLRIYSTTDK----ILQKSFTTPRNIGSRNNSNKHAQQTSKPYFTVLWLDND--RIVSSFPTGELLSWDINSGKWK-------AITNG--HNRIIF--C-LRKDDLTNQLISVSMDRMILIHKKSNLKVVQRIPTFGGFVYSLSSVPQDPHRFAVGVGDNTIRVWSTGDQADPYNSASIWHSIKTKVTVIQYHPTKEGIIGFGTEDGHVGCYSSITQKS-DVSTSYHKKTVYALEWGPCSCSKEEQEDEKVKVNCLYSVGGEGMILMHKLGAFNQKAVDIGALIKKHNHITSP-PSRSEIKWHQSYQFVAIGNEDGTIDVFSATHLTLLGHIQAHKKIINSIDWHHDFTGDLSDCSFWIASGSNEETVCVYDARSICLQEKSSIKAITVDTPYQTLTGHSSRITKVKWSPHAIGVLASSSYDGSIQVWDVKKNEGLGNYRGHLGRVHCVAWSYVSSDVLLSGGEDFCLHRW 2098
LP SPNWYC + G F F + + F+ + + P + ++G + RV+ TF + ++ A S++DG +K+ ++ KT VTEH H I+++ W+ K I+SGDEKGV+ + F N +++ +T+ ++ SPH D+ A GY +G +++ D +KK +H + H +E+ I+W P + +SI +KD+T+RI+S + IL+ F R G + + + T+ W N ++VSS GELL WD+ W+ A + G H+RI+F C L+ +D L+S SMDR + + L+ +P+ GGF YSL+ D A+GVGD IRVW+T + Y+ + W +K+KVT + +HPTKEG + FGT+DG VG Y + + K +S++YHKKTVY L WGP + LYS GGEG++L H + +A DI LI+ N I P +EI W + +A+GNEDG+I++F +L L+ IQ H K++N+I WHH+ G + S+ +ASGSN + V++ +++ E S +T+ PY+TL+GH+++IT V WSPH G L S+SYDG+ QVWD + E L N+RGH GR+ CVAWS + D + SG +DFC+H+W
Sbjct: 8 LPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGELVGHTERVSGF----TFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPRVKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFC-LTCSPHHEDLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGCYLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKE------RLWLTLHWPSNQPTQLVSSCFGGELLQWDLTQS-WRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGPPVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHTEISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEH-GSQPELSYLMASGSNNAVIYVHNLKTVI--ESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASYDGTAQVWDALREEPLCNFRGHRGRLLCVAWSPLDPDCIYSGADDFCVHKW 710 HSP 2 Score: 144.436 bits (363), Expect = 4.727e-34 Identity = 84/289 (29.07%), Postives = 146/289 (50.52%), Query Frame = 2
Query: 2447 DSKKKELMQEDCINLATYLKAESTKLGSGCEKAGLTPGSEEHVNLGLYTDRKGVFTMLSTESQNHKESGSIDKYNHLQIWQNSIPAAIEHAVKNKCLNDSLVALSPLGGYDLWLSTCMKYAEQLEERSNFSMAANYYMMSGDFNRVINMFKANNFIKEALTFAKSHLPKGDPTLTELYLLWAKRLSNENSYENAAECYLACGHTDDAITMLSKRNDANAIMTALKVATIYEMTEKCDQLSTKAVKALLQEQRWSTCFELINERPDLPMINKIQLVVGEILLEYVDRKQF 3313
D + KE + +DC+ LAT S +L ++ EE +LGL+TDR ++ M+ E + H E+G + ++ L +W+ + ++ A + L D+LVA++P GY +WL +A+QL + + AA++ + + + K+N+F +EA+ AK+ L DP L +LYL W L + Y AA+CYL DA +L+K+ DA ++ TA ++A I E L+ + + LL W E + L ++ + E+L +++ KQ
Sbjct: 856 DHRSKEELHQDCLVLAT--AKHSRELNED-----VSADVEERFHLGLFTDRATLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHVWLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDPVLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGEDELSASLALRCAQELLLANNWVGAQEALQLHESL-QGQRLVFCLLELLSRHLEEKQL 1136 The following BLAST results are available for this feature:
BLAST of TCONS_00007914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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