TCONS_00007944-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007944-protein
Unique NameTCONS_00007944-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007944-protein ID=TCONS_00007944-protein|Name=TCONS_00007944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp
MHPASGVLHSLAGAKNESGKSFENTLDYLSSTTDQLVEILHNFEVGMRIA
VLTNLPRDTDTKDVTKLVSKIDSNGMRAVHLNLEDVKDVSSIWYTINRSV
ELKLTTFVLLMPPFCSMLVIDVALSKHLTDKDQSWIAVNLNKKNKVALMR
ERFHVNNLLIRKQPRNHTRSLDRSQQNRDDSGSLQTDPVYTIEPPKWRKT
KKSSDVKHFLRFATIFYHPLVFPLLHIPNEAGSCEVGMPCRFPKKISGLS
GVRWIPACCSGLILDILQNVIKDMNVVFDLYVVEDQTFGGFHNGSWTGIV
QDVYTGKADVGVHAMTQLHQRLDYVDYTEPILGSWLGIVRRREKPSLPVI
NWIFLTKLHVNLIIAILVVFVINFVFALVCENTMAKYLRLKRFHTRDMFS
YISGLLFQRDLGAKLPEFWSSRLPCICYAIAMTIIMSTYTANLTATNIVY
DDSDDFQGLSDPKLTNPSSEFKITVMGQTAYELWARTKPLLYEHMKDAMV
PNDYVGVKNVLSGSLDGYIGDYKFLKYLSQLPQFCHKLRLYKEKRKSIFS
AFIVPKNSPWKEPFSQEILNTFETGKMAELLDRWLWYTACEQTENDVSSF
TWRYFGGLFVFTGASIGFVTLVLCLEFLVNCIRNVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004478XLOC_004478Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007944TCONS_00007944Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 235..587
e-value: 5.8E-5
score: -33.6
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 358..614
e-value: 6.1E-12
score: 45.5
NoneNo IPR availableGENE3D1.10.287.70coord: 356..488
e-value: 3.8E-6
score: 25.9
NoneNo IPR availableGENE3D3.40.190.10coord: 206..355
e-value: 5.1E-18
score: 64.5
NoneNo IPR availableGENE3D3.40.190.10coord: 489..603
e-value: 1.0E-7
score: 31.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..190
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 453..587
coord: 258..343
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 261..585
e-value: 2.2E-13
score: 50.1

Blast
[Close]
BLAST of TCONS_00007944-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.043e-41
Identity = 134/463 (28.94%), Postives = 200/463 (43.20%), Query Frame = 0 
Query:  193 EPPKWRKTKKSSDVKHFLRFATIFYHPLVFPLLHIPNEAGSCEVGMPCRFPKK---------ISGL-SGVRWIP----ACCSGLILDILQNVIKDMNVVFDLYVVEDQTFGGFHNGSWTGIVQDVYTGKADVGVHAMTQLHQRLDYVDYTEPILGSWLGIVRRREKPSLPVINWIFLTKLHVNLIIAILVVFVINFVFALVCENTMAKYLRLKRFHTRDMFSYIS------GLLFQRDLGAKLPEFWSSRLPCICYAIAMTIIMSTYTANLTATNIVYDDSDDFQGLSDPKLTNPSSEFKITVMGQTAYELWARTK-PLLYEHMKDAMVPNDYVGVKNVLSG--SLDGYIGDYKFLKYLSQLPQFCHKLRLYKEKRKSIFSAFIVPKNSPWKEPFSQEILNTFETGKMAELLDRWLWYTACEQTENDVS---SFTWRYFGGLFVFTGASIGFVTLVLCLEFLV 629
            E  +  KT      K  LR  T+  HP VF      ++ G C  G  C  P            S L S    +P     CC G  +D+L+ + +DMN  FDLY+V D  +G + NG WTG+V D+  G A + V + +    R   +D+T P   + LGI+ R    + P+    F+  LH  + + I V   I  VF  + E      L  K  +   +FS+ S       LLF R +  K P+ W+ R     +AI     +STYTANL A  +     ++  G+ DPKL +PS  F+   + +++ E + R   P ++E+M+   VP    GV+ + +    LD +I D   L Y   +   C  L + K      +    +P NSP     S+ I      G M  L D+W     C +    V+       ++F GLFV      G   L    E +V
Sbjct:  498 EQAQRHKTHFQHPSKLHLRVVTLIEHPFVF--TREVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPI--GAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGY-GIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIV 955
The following BLAST results are available for this feature:
BLAST of TCONS_00007944-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A1.043e-4128.94Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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