TCONS_00007944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007944
Unique NameTCONS_00007944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007944 ID=TCONS_00007944|Name=TCONS_00007944|organism=Clytia hemisphaerica|type=transcript|length=3721bp
GTCGCGTATATGTTGTACTACATGATATCCATCATAAACTTTTTGTGCCA
TCCATGAAAAAGATTCATAAAGAGTTTTAGTGAACGTCACTCCCTCTCTC
TTTATTTGTTTACCTGATGCTTTCTCGACGTGGAGCTCTCGTAAGTGTTT
TAAGTACTTAATCTCATCCCAAGTCATTCTCTTACACATCTTGCGTACAG
AAAAAGGTATATCATGTCGTATGTGAATCGTTTTTGTTTCGGCTGAATCG
GGTGTATCGTATGAATTTTCCCTCTTATCATATTNGTTTTTGTTTCGGCT
GAATCGGGTGAATCGAATGAATTTTCCCTTTTATCATATCGAATACACAT
ATTTCTCATAAAAGTATTTTTCGCTTTCAACATTTCGACTTCATGCCAGA
AATCTTGATCTATATTTTTCAGAATGTTCCAAAATGTTTTATTGAAATGA
TTATATAAAATAACATCAGCCTGACTCCATTTAGTGATTTTCTTTTGTAG
AGGTTTTGAGATATGTCTCCGCCACGATTCCGCTCGATTCTTTAATCGAA
AGTAAACAAAGTCATCTAATTCCCAACACAATAAACGTTTTAAGAGAACA
ATAGATTCATCAAAATATTCCATCATCATCACCAAATGAAATTGATGATC
CAACTCCTCCAGCTTCTTATAAATCtctttattgtttttaaaatctttcg
aTTCTAACCCTAAATCATAAAACATTCCATTTTGGATCAATTTCAATCGA
TCACTATTGATCCTCAAATCTTGAGTCAGAACATAATTGACTAAAACTTT
TTCAGGGTCTTTAAAAAACTCTGTTAAAGTGTCTTCACTTTTCTTCATTC
CCAAAATCTTATCAAAAGTCATGTACGAGAAGCTAGATTCGAACTGGCTG
ATGGGATTACGTAATATAGTGACGTAAACAGTATCATTGGGCATCAAATC
AGTCATAGGTTGTTTATTGAATCTAGCATGATTACATAATATGTTTGGTT
CTGTTCCGTTTAGAGGATAAAATGAAGTGTTCTTAAAAAACCAAGGCCAG
TCCAATCGATTGGATCCGATGCTAGAGACAGCGCACCATTCTCGATGAAG
TGCCAACATGACCAATATCGAATGACGAGAGGTACCAGAATGCAGTTCAA
AGTCAACAGATAACATATGAGCCGAAATCTCGATGCTTTATGTCTCATTT
TGACCACGAGTAGGAAACCCTTTGAACTCAATATTTTCACCTTTGCCGGG
AATGATTCGTTGATAGATATCCCACGGCTTTCAACAACTCCGTGAAGAAA
CCTGATATCGAAAAAAAGATTTCAGGTGATGTCAATTATTCGACGATAGG
TGATGACATGCACCCAGCATCCGGTGTTTTGCACTCCTTGGCAGGTGCGA
AGAACGAAAGTGGAAAAAGTTTTGAGAACACACTTGATTATCTTTCATCG
ACCACCGACCAACTGGTTGAAATCCTACACAATTTTGAAGTTGGTATGCG
CATTGCGGTCCTCACAAATCTCCCAAGAGACACAGATACGAAAGACGTTA
CAAAATTGGTCAGTAAAATAGACAGTAACGGAATGCGAGCGGTTCATTTG
AATCTCGAAGATGTCAAGGACGTGTCTAGTATATGGTATACCATCAATCG
ATCAGTCGAATTGAAACTGACCACCTTTGTGTTGTTAATGCCTCCATTTT
GCTCAATGTTGGTCATAGACGTGGCTTTGAGTAAACATTTGACTGATAAA
GATCAGAGCTGGATAGCAGTCAACTTGAACAAGAAAAATAAGGTTGCATT
AATGAGAGAAAGATTTCATGTCAATAATCTGCTGATTAGAAAACAGCCGA
GGAATCACACGCGCTCACTCGATCGGAGTCAACAGAACAGAGATGATAGC
GGTAGCTTACAGACGGATCCAGTGTACACCATTGAGCCTCCAAAATGGcg
caaaacaaagaaatcatcAGATGTTAAACATTTCCTTCGATTTGCCACCA
TCTTTTACCACCCACTAGTTTTCCCTCTTCTACATATTCCGAACGAAGCT
GGCAGTTGTGAAGTAGGTATGCCATGCCGATTTCCGAAGAAAATctccgg
actgtccggtgttcGGTGGATTCCGGCATGTTGTTCCGGATTGATTTTGG
ATATTTTGCAGAACGTGATTAAAGATATGAACGTTGTGTTCGATTTGTAC
GTCGTTGAAGACCAAACGTTCGGTGGTTTTCATAATGGATCGTGGACGGG
GATCGTTCAAGACGTTTATACGGGAAAAGCGGACGTTGGAGTTCACGCAA
TGACGCAATTACACCAACGTTTGGACTACGTAGATTACACTGAACCTATT
CTTGGTTCATGGTTAGGTATCGTTCGGCGCCGTGAAAAACCGTCGCTACC
CGTCATCaattggatattcttaaccAAACTTCATGTTAACTTGATCATTG
CTATTCTAGTCGTGTTTGTTATCAACTTTGTGTTTGCTCTCGTTTGCGAA
AACACCATGGCCAAGTATTTACGACTCAAACGTTTCCACACGAGAGACAT
GTTTTCTTATATCTCTGGACTACTTTTTCAAAGAGACCTGGGTGCTAAGT
TACCAGAATTCTGGTCCAGTCGACTACCCTGTATTTGTTACGCTATTGCC
ATGACGATCATCATGTCAACATACACTGCTAATCTTACGGCGACGAATAT
TGTTTACGACGATAGCGATGATTTTCAAGGACTGTCTGATCCTAAGCTGA
CCAATCCGAGCAGCGAGTTTAAGATCACAGTGATGGGACAAACAGCATAT
GAGTTGTGGGCGCGAACTAAACCTCTTCTTTATGAACACATGAAAGACGC
GATGGTACCCAATGATTACGTCGGTGTCAAGAACGTCCTATCAGGATCAT
TGGATGGTTATATTGGAGATTACAAATTCTTGAAATATCTCTCACAACTC
CCACAATTCTGCCATAAACTAAGACTTTACAAAGAGAAACGGAAATCCAT
ATTCAGTGCTTTCATTGTACCGAAGAACTCGCCCTGGAAAGAGCCATTCT
CGCAGGAAATCCTGAACACTTTTGAGACGGGCAAAATGGCGGAACTGCTA
GATCGTTGGTTGTGGTACACAGCTTGTGAACAAACGGAGAACGACGTCAG
TTCTTTCACGTGGCGATATTTCGGTGGACTTTTCGTCTTTACCGGAGCTT
CTATTGGATTTGTCACTTTGGTTTTGTGTCTGGAATTTCTGGTGAATTGT
ATTCGTAACGTGTCATGAACATTGTGTGTTCTTTATATCCATGAAAACAA
CGTGTGTAGCTTGTGAGCCGTCTCTTCTACTTGTTGTTTCCCTGCTTTTC
TGGAAATGTAACTTTGGTGATAACATACTCATCAAGTATTGCGTGTTAAA
GACATATGCTAGGACATCGACATATATTGTTGAGATGCACATTGTTGAgc
aaatcaacaaaatttttacCATAGAGATTAAAGACATATGGTTGGTAAAC
TGCCATCTTTCTCACTGGTATGTGAGCTGAATGAATGACTATAAAAGAAA
TTTATGTATGAAGTCTTTATAACTGAGGGGACGATGATATTTAATACTCA
TTTTTACTATACTACGATTTgtatttttagacatttttaaatttcgttAT
TGTGAAAGTAAACTTTGTGTACCATGAAAATCGCAGATTATCGCAATTTC
ATTATGTAAGCATTTTGAGAG
Run BLAST on NCBI

protein sequence of TCONS_00007944-protein

>TCONS_00007944-protein ID=TCONS_00007944-protein|Name=TCONS_00007944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp
MHPASGVLHSLAGAKNESGKSFENTLDYLSSTTDQLVEILHNFEVGMRIA
VLTNLPRDTDTKDVTKLVSKIDSNGMRAVHLNLEDVKDVSSIWYTINRSV
ELKLTTFVLLMPPFCSMLVIDVALSKHLTDKDQSWIAVNLNKKNKVALMR
ERFHVNNLLIRKQPRNHTRSLDRSQQNRDDSGSLQTDPVYTIEPPKWRKT
KKSSDVKHFLRFATIFYHPLVFPLLHIPNEAGSCEVGMPCRFPKKISGLS
GVRWIPACCSGLILDILQNVIKDMNVVFDLYVVEDQTFGGFHNGSWTGIV
QDVYTGKADVGVHAMTQLHQRLDYVDYTEPILGSWLGIVRRREKPSLPVI
NWIFLTKLHVNLIIAILVVFVINFVFALVCENTMAKYLRLKRFHTRDMFS
YISGLLFQRDLGAKLPEFWSSRLPCICYAIAMTIIMSTYTANLTATNIVY
DDSDDFQGLSDPKLTNPSSEFKITVMGQTAYELWARTKPLLYEHMKDAMV
PNDYVGVKNVLSGSLDGYIGDYKFLKYLSQLPQFCHKLRLYKEKRKSIFS
AFIVPKNSPWKEPFSQEILNTFETGKMAELLDRWLWYTACEQTENDVSSF
TWRYFGGLFVFTGASIGFVTLVLCLEFLVNCIRNVS
Run BLAST on NCBI

transcript from alignment at sc0000080:643230..650527-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007944 ID=TCONS_00007944|Name=TCONS_00007944|organism=Clytia hemisphaerica|type=transcript|length=7298bp|location=Sequence derived from alignment at sc0000080:643230..650527- (Clytia hemisphaerica)
GTCGCGTATATGTTGTACTACATGATATCCATCATAAACTTTTTGTGCCA
TCCATGAAAAAGATTCATAAAGAGTTTTAGTGAACGTCACTCCCTCTCTC
TTTATTTGTTTACCTGATGCTTTCTCGACGTGGAGCTCTCGTAAGTGTTT
TAAGTACTTAATCTCATCCCAAGTCATTCTCTTACACATCTTGCGTACAG
AAAAAGGTATATCATGTCGTATGTGAATCGTTTTTGTTTCGGCTGAATCG
GGTGTATCGTATGAATTTTCCCTCTTATCATATTNGTTTTTGTTTCGGCT
GAATCGGGTGAATCGAATGAATTTTCCCTTTTATCATATCGAATACACAT
ATTTCTCATAAAAGTATTTTTCGCTTTCAACATTTCGACTTCATGCCAGA
AATCTTGATCTATATTTTTCAGAATGTTCCAAAATGTTTTATTGAAATGA
TTATATAAAATAACATCAGCCTGACTCCATTTAGTGATTTTCTTTTGTAG
AGGTTTTGAGATATGTCTCCGCCACGATTCCGCTCGATTCTTTAATCGAA
AGTAAACAAAGTCATCTAATTCCCAACACAATAAACGTTTTAAGAGAACA
ATAGATTCATCAAAATATTCCATCATCATCACCAAATGAAATTGATGATC
CAACTCCTCCAGCTTCTTATAAATCTCTTTATTGTTTTTAAAATCTTTCG
ATTCTAACCCTAAATCATAAAACATTCCATTTTGGATCAATTTCAATCGA
TCACTATTGATCCTCAAATCTTGAGTCAGAACATAATTGACTAAAACTTT
TTCAGGGTCTTTAAAAAACTCTGTTAAAGTGTCTTCACTTTTCTTCATTC
CCAAAATCTTATCAAAAGTCATGTACGAGAAGCTAGATTCGAACTGGCTG
ATGGGATTACGTAATATAGTGACGTAAACAGTATCATTGGGCATCAAATC
AGTCATAGGTTGTTTATTGAATCTAGCATGATTACATAATATGTTTGGTT
CTGTTCCGTTTAGAGGATAAAATGAAGTGTTCTTAAAAAACCAAGGCCAG
TCCAATCGATTGGATCCGATGCTAGGTAAGACGAAGTTGAGATTCCTTGC
TTCACCATATCTGTTGAGGATATTGGTGATGGTTGAACTCCCTGTTTTGT
GTGTCTTCAGAAACACGATGTTCTTCTTACGTTTGCATGCTCTGTAGAAA
GAAAAGACAAATTTTTGTGTTGTAGATTACTTTTTCTAGCTCCCAACTGG
GAAAATTTGCCTTGGAGTTTGTCTCTGGTGAAAAATATCCTGCAGTTTCA
TCTTGCTTGTTATGGTTAGGGGTTTGAATTTTATTGTTTAAAAATAGTTC
TAAAAAAGATTCAGTGAGGATGTCCGAATATTTTTAAACAATAAAATTCA
AAACCCCTAACTAATTACAAGCAAAAGTTTTCCATTGGCATTTGATATAC
TTTCACTTTATAACTAAAAACTTAGCAAGGGGTTTTGGAGTAATTACTTC
ACGGCTACCTTATGTTTCACAGTTTTCATTGTTCAATTCCTTATCTCGAT
CAACCCTACTAAACTAATAAGTGGCTTTGGGAAGGAGAACGAGAAATTTT
TACTCTTATACTCAAAGAAATTTTTTAGTTTACTTACTTCCGATGATGTA
ATCTTTCAACATGTTTCCCACCCACTGGGATCTTCTGTAACATAAATTCT
TTTTGTTGCAGAGACAGCGCACCATTCTCGATGAAGTGCCAACATGACCA
ATATCGAATGACGAGAGGTACCAGAATGCAGTTCAAAGTCAACAGATAAC
ATATGAGCCGAAATCTCGATGCTTTATGTCTCATTTTGACCACGAGTAGG
AAACCCTTTGAACTCAATATTTTCACCTTTGCCGGGTTTGTATTCTTTCT
CGATTCTTCAATCTAACTCTTTAGTTGAACTGTTTTCTATCTTTCTTTAC
ATGCTGAACCTCGGTCAAACAATTTGAACAGTTCGTACACATCTTCAGTA
TAAACAAAGATGGCGGCTATTTTAATGATGGTTTCAATTTTGCACGTTTT
CAGAAAATTATAGCCTTTTCAAAATTTATCAACACCAAAACAGATAATAG
CTTCCATTAATACGAAAAAAGGGACTGGGTGGACTTTCAAGAGAATAGGT
CATTAGAATGAACATGGATTTGATATTTTTGAAAATAAATGATTTTCTCA
TCTCATTTATTTCGCAACCACTTGAGATTTGTAATTCGTTTCGAATTTCT
TCAGGAATGATTCGTTGATAGATATCCCACGGCTTTCAACAACTCCGTGA
AGAAACCTGATATCGAAAAAAAGGTCGGTAAAAATCTTTTTGCTGGTTCA
TTAGTGTTTATCCGTTAATAAAATTAAATAATACTATAAACAATGAAAAG
GGAGAAGGCAAAACAAAAGATGGAAAAAACCTTTTTGTTGTTCATTTTTG
TAAGGTCGATTTCTCTAGTGAAGTTCTACAGATAAATAAAAATGTTTTTC
ATGATCCAAAATATCCTACATCATGAATAATTGGTGGGTTGAGAAAACAC
AATATTCTTTCGAACTGAAAATATAACTTCAGATGAATGTATAATATTAT
TTGACGGGTCTACAAGATGTACGCGTTTGTATTTATGTTTTTATACAGCC
TAGCCTGGTTTTGTGATGCTATTCTTCTACAACCTTCACAGGCTAATATT
TTCCAACCGACTAGCCTCAACTCCTTACTACACACCAGTCATTTGAAGAT
TTCAGGTGATGTCAATTATTCGACGATAGGTGATGACATGCACCCAGCAT
CCGGTGTTTTGCACTCCTTGGCAGGTGCGAAGAACGAAAGTGGAAAAAGT
TTTGAGGTAAACTTCTGATGTGTTTCTGACTTTAGGCCCTGTCACTATTT
AAAGAATATCACCACTTTTTTCCTCTTTTTTGCCTCTTTTTTGCCTCTTT
TTTGCCTCATAGGCCCCAATCCGTAAACACGGTTGAAAGATGGTTGTTCT
TTATGTACTTTATACAAACTTTCGTGAGCAGAAACTTTTGCGATTTTCGC
GAAAGTAAATGTCTTTGGAAATTCTTAACAGGGCGATTCGCGAAAGTTTA
TGCTCGAGAAAAATTCTCAAAAAGATTGGAAATCTATAAAACCTCAAAAT
TGTAATAAATATCAAATTTTTGCCATATTTCTATCCTTTAATACCTTAGT
CAAAGAGCAACTGTCTTTATCGGATTTGAGTAATATTTTTCACTCTAAAT
GCAATTTTATTTCGAAAAATCTCATTTTTATCAAACGATTCGCGAAAATT
TATACTTGCGAAAAACATTTTCCCTCCAATTCGCGAAATTAAATGTCGTG
AATTTCTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTAGC
TTGCCGAATTTTTTGTGTTTTGGAAATGTATATTTTGTATAAAGTTATAC
AGTTTTCCCCAACTTTCCAGAACACACTTGATTATCTTTCATCGACCACC
GACCAACTGGTTGAAATCCTACACAATTTTGAAGTTGGTATGCGCATTGC
GGTCCTCACAAATCTCCCAAGAGACACAGATACGAAAGACGTTACAAAAT
TGGTCAGTAAAATAGACAGTAACGGAATGCGAGCGGTTCATTTGAATCTC
GAAGATGTCAAGGACGTGTCTAGTATATGGTATACCATCAATCGATCAGT
CGAATTGAAACTGACCACCTTTGTGTTGTTAATGCCTCCATTTTGCTCAA
TGTTGGTCATAGACGTGGCTTTGAGTAAACATTTGACTGATAAAGATCAG
AGCTGGATAGCAGTCAACTTGAACAAGAAAAATAAGGTTGCATTAATGAG
AGAAAGATTTCATGTCAATAATCTGCTGATTAGAAAACAGCCGAGGAATC
ACACGCGCTCACTCGATCGGAGTCAACAGAACAGGTTTGTAGTGAAATGA
TAAACGTCTCTCTTTTTGTCCTAGTTTTTAATCAAGTTTATCATGAAAAT
TAACAAGTAACTGAAGATTACTATAGAATTTTAAATAGTTCTATATACGA
AAGTATTCCATTATCCTAACCCGCTTACATCATTTTCCTTTTTTATCTAG
AGATGATAGCGGTAGCTTACAGACGGATCCAGTGTACACCATTGAGCCTC
CAAAATGGCGCAAAACAAAGAAATCATCAGATGTTAAACATTTCCTTCGA
TTTGCCACCATCTTTTACCACCCACTAGTTTTCCCTCTTCTACATATTCC
GAACGAAGCTGGCAGTTGTGAAGTAGGTATGCCATGCCGATTTCCGAAGA
AAATCTCCGGACTGTCCGGTGTTCGGTGGATTCCGGCATGTTGTTCCGGA
TTGATTTTGGATATTTTGCAGAACGTGATTAAAGATATGAACGTTGTGTT
CGATTTGTACGTCGTTGAAGACCAAACGTTCGGTGGTTTTCATAATGGAT
CGTGGACGGGGATCGTTCAAGACGTTTATACGGGAAAAGCGGACGTTGGA
GTTCACGCAATGACGCAATTACACCAACGTTTGGACTACGTAGATTACAC
TGAACCTATTCTTGGTTCATGGTTAGGTATCGTTCGGCGCCGTGAAAAAC
CGTCGCTACCCGTCATCAATTGGATATTCTTAACCAAACTTCATGTTAAC
TTGATCATTGCTATTCTAGTCGTGTTTGTTATCAACTTTGTGTTTGCTCT
CGTTTGCGAAAACACCATGGCCAAGTATTTACGACTCAAACGTTTCCACA
CGAGAGACATGTTTTCTTATATCTCTGGACTACTTTTTCAAAGAGACCTG
GGTGCTAAGTTACCAGAATTCTGGTCCAGTCGACTACCCTGTATTTGTTA
CGCTATTGCCATGACGATCATCATGTCAACATACACTGCTAATCTTACGG
CGACGAATATTGTTTACGACGATAGCGATGATTTTCAAGGACTGTCTGAT
CCTAAGGTATAAATTGAGGTGTTTTTCAATCTTGTTTCTTGACGTTTAAA
TCAACCTCTTAATTTGGGTTTTGAACTTACATTATTCGATAAATTTTTCC
TGNTCGGTGGTTTTCATAATGGATCGTGGACGGGGATCGTTCAAGACGTT
TATACGGGAAAAGCGGACGTTGGAGTTCACGCAATGACGCAATTACACCA
ACGTTTGGACTACGTAGATTACACTGAACCTATTCTTGGTTCATGGTTAG
GTATCGTTCGGCGCCGTGAAAAACCGTCGCTACCCGTCATCAATTGGATA
TTCTTAACCAAACTTCATGTTAACTTGATCATTGCTATTCTAGTCGTGTT
TGTTATCAACTTTGTGTTTGCTCTCGTTTGCGAAAACACCATGGCCAAGT
ATTTACGACTCAAACGTTTCCACACGAGAGACATGTTTTCTTATATCTCT
GGACTGCTTTTTCAAAGAGACCTGGGTGCTAAGTTACCAGAATTCTGGTC
CAGTCGGCTACCATGTATTTGTTACGCTATTGCCATGACGATCATCATGT
CAACATACACTGCTAATCTTACGGCGACGAATATTGTTTACGACGATAGC
GATGATTTTCAAGGACTGTCTGATCCTAAGGTATAAATTGAGGTGTTTTT
CAATCTTGTTTCTTGACGTTTAAATCAACCTCTTAATTTGGGTTTTGAAC
TTACATTATTCGATAAATTTTTCCTGAAGGTTATAAGTTACTTTATAAAG
ATGAAGAACTTTTGTTTCAATAATATAACTGATAAACTCTATTTTTCCCG
AGATCAACCGCTACTCTGTGCTTGCTTTTCCCACGTTCTTGCCGGGGATT
AGAAAGTTTAATCATCCTACAGTAAAACTGAAAAACTAACAAATTCTCTC
TCCCTCTTTCTTAACTTCAGCTGACCAATCCGAGCAGCGAGTTTAAGATC
ACAGTGATGGGACAAACAGCATATGAGTTGTGGGCGCGAACTAAACCTCT
TCTTTATGAACACATGAAAGACGCGATGGTACCCAATGATTACGTCGGTG
TCAAGAACGTCCTATCAGGGTGAGTTGACTTTTTCAGAGAATTTTACGGG
TTCTCTGAGTAGAGGGTGTATAGATAGGATAAGAATTTCTGTTTTTGAAA
TATTGGATGGCCTGTGTGCTTTCCGCTTCTGTACAGGGAAGCTCTTCTAA
GTGTATTTAAATACACCCCGTGTCACATACCCGGTGGGACCCCGCCCCAC
TGAAAGATTCGACCAAAATTCCGTCCCCGGAAGGAAAAAACCTGAAAATC
AGTGGAATAAATTGCACTCCTCAACCATCCCCACCTGATTTTTAGCTGTG
AATAATAGAATTTCTATCCACATTGTGTTTTCGATGGAAATTTTTACTGT
TGGAAAAAGTTTCACTAGGGCTGTGAGACAGGGCTGTTTAGATTGAAATT
GGAACTGTTGGGAATCGTTTGATAAAAAAATGCTGATTTGGTTTTGATTA
TTGTTTTTTCGTCCTTTATCAGATCATTGGATGGTTATATTGGAGATTAC
AAATTCTTGAAATATCTCTCACAACTCCCACAATTCTGCCATAAACTAAG
ACTTTACAAAGAGAAACGGAAATCCATATTCAGTGCTTTCATTGTACCGA
AGAACTCGCCCTGGAAAGAGCCATTCTCGCAGGAAATCCTGAACACTTTT
GAGACGGGCAAAATGGCGGAACTGCTAGATCGTTGGTTGTGGTACACAGC
TTGTGAACAAACGGAGAACGACGTCAGTTCTTTCACGTGGCGATATTTCG
GTGGACTTTTCGTCTTTACCGGAGCTTCTATTGGATTTGTCACTTTGGTT
TTGTGTCTGGAATTTCTGGTGAATTGTATTCGTAACGTGTCATGAACATT
GTGTGTTCTTTATATCCATGAAAACAACGTGTGTAGCTTGTGAGCCGTCT
CTTCTACTTGTTGTTTCCCTGCTTTTCTGGAAATGTAACTTTGGTGATAA
CATACTCATCAAGTATTGCGTGTTAAAGACATATGCTAGGACATCGACAT
ATATTGTTGAGATGCACATTGTTGAGCAAATCAACAAAATTTTTACCATA
GAGATTAAAGACATATGGTTGGTAAACTGCCATCTTTCTCACTGGTATGT
GAGCTGAATGAATGACTATAAAAGAAATTTATGTATGAAGTCTTTATAAC
TGAGGGGACGATGATATTTAATACTCATTTTTACTATACTACGATTTGTA
TTTTTAGACATTTTTAAATTTCGTTATTGTGAAAGTAAACTTTGTGTACC
ATGAAAATCGCAGATTATCGCAATTTCATTATGTAAGCATTTTGAGAG

Coding sequence (CDS) from alignment at sc0000080:643230..650527-

>TCONS_00007944 ID=TCONS_00007944|Name=TCONS_00007944|organism=Clytia hemisphaerica|type=CDS|length=1911bp|location=Sequence derived from alignment at sc0000080:643230..650527- (Clytia hemisphaerica)
ATGCACCCAGCATCCGGTGTTTTGCACTCCTTGGCAGGTGCGAAGAACGA
AAGTGGAAAAAGTTTTGAGAACACACTTGATTATCTTTCATCGACCACCG
ACCAACTGGTTGAAATCCTACACAATTTTGAAGTTGGTATGCGCATTGCG
GTCCTCACAAATCTCCCAAGAGACACAGATACGAAAGACGTTACAAAATT
GGTCAGTAAAATAGACAGTAACGGAATGCGAGCGGTTCATTTGAATCTCG
AAGATGTCAAGGACGTGTCTAGTATATGGTATACCATCAATCGATCAGTC
GAATTGAAACTGACCACCTTTGTGTTGTTAATGCCTCCATTTTGCTCAAT
GTTGGTCATAGACGTGGCTTTGAGTAAACATTTGACTGATAAAGATCAGA
GCTGGATAGCAGTCAACTTGAACAAGAAAAATAAGGTTGCATTAATGAGA
GAAAGATTTCATGTCAATAATCTGCTGATTAGAAAACAGCCGAGGAATCA
CACGCGCTCACTCGATCGGAGTCAACAGAACAGAGATGATAGCGGTAGCT
TACAGACGGATCCAGTGTACACCATTGAGCCTCCAAAATGGCGCAAAACA
AAGAAATCATCAGATGTTAAACATTTCCTTCGATTTGCCACCATCTTTTA
CCACCCACTAGTTTTCCCTCTTCTACATATTCCGAACGAAGCTGGCAGTT
GTGAAGTAGGTATGCCATGCCGATTTCCGAAGAAAATCTCCGGACTGTCC
GGTGTTCGGTGGATTCCGGCATGTTGTTCCGGATTGATTTTGGATATTTT
GCAGAACGTGATTAAAGATATGAACGTTGTGTTCGATTTGTACGTCGTTG
AAGACCAAACGTTCGGTGGTTTTCATAATGGATCGTGGACGGGGATCGTT
CAAGACGTTTATACGGGAAAAGCGGACGTTGGAGTTCACGCAATGACGCA
ATTACACCAACGTTTGGACTACGTAGATTACACTGAACCTATTCTTGGTT
CATGGTTAGGTATCGTTCGGCGCCGTGAAAAACCGTCGCTACCCGTCATC
AATTGGATATTCTTAACCAAACTTCATGTTAACTTGATCATTGCTATTCT
AGTCGTGTTTGTTATCAACTTTGTGTTTGCTCTCGTTTGCGAAAACACCA
TGGCCAAGTATTTACGACTCAAACGTTTCCACACGAGAGACATGTTTTCT
TATATCTCTGGACTACTTTTTCAAAGAGACCTGGGTGCTAAGTTACCAGA
ATTCTGGTCCAGTCGACTACCCTGTATTTGTTACGCTATTGCCATGACGA
TCATCATGTCAACATACACTGCTAATCTTACGGCGACGAATATTGTTTAC
GACGATAGCGATGATTTTCAAGGACTGTCTGATCCTAAGCTGACCAATCC
GAGCAGCGAGTTTAAGATCACAGTGATGGGACAAACAGCATATGAGTTGT
GGGCGCGAACTAAACCTCTTCTTTATGAACACATGAAAGACGCGATGGTA
CCCAATGATTACGTCGGTGTCAAGAACGTCCTATCAGGATCATTGGATGG
TTATATTGGAGATTACAAATTCTTGAAATATCTCTCACAACTCCCACAAT
TCTGCCATAAACTAAGACTTTACAAAGAGAAACGGAAATCCATATTCAGT
GCTTTCATTGTACCGAAGAACTCGCCCTGGAAAGAGCCATTCTCGCAGGA
AATCCTGAACACTTTTGAGACGGGCAAAATGGCGGAACTGCTAGATCGTT
GGTTGTGGTACACAGCTTGTGAACAAACGGAGAACGACGTCAGTTCTTTC
ACGTGGCGATATTTCGGTGGACTTTTCGTCTTTACCGGAGCTTCTATTGG
ATTTGTCACTTTGGTTTTGTGTCTGGAATTTCTGGTGAATTGTATTCGTA
ACGTGTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004478XLOC_004478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007944-exon-sc0000080-1575043694:649453..650527TCONS_00007944-exon-sc0000080-1575043694:649453..650527Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:648643..648816TCONS_00007944-exon-sc0000080-1575043694:648643..648816Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:648205..648273TCONS_00007944-exon-sc0000080-1575043694:648205..648273Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:647672..647779TCONS_00007944-exon-sc0000080-1575043694:647672..647779Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:646594..647057TCONS_00007944-exon-sc0000080-1575043694:646594..647057Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:645572..646427TCONS_00007944-exon-sc0000080-1575043694:645572..646427Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:644509..644657TCONS_00007944-exon-sc0000080-1575043694:644509..644657Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1575043694:643230..644055TCONS_00007944-exon-sc0000080-1575043694:643230..644055Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:649453..650527TCONS_00007944-exon-sc0000080-1510915933:649453..650527Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:648643..648816TCONS_00007944-exon-sc0000080-1510915933:648643..648816Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:648205..648273TCONS_00007944-exon-sc0000080-1510915933:648205..648273Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:647672..647779TCONS_00007944-exon-sc0000080-1510915933:647672..647779Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:646594..647057TCONS_00007944-exon-sc0000080-1510915933:646594..647057Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:645572..646427TCONS_00007944-exon-sc0000080-1510915933:645572..646427Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:644509..644657TCONS_00007944-exon-sc0000080-1510915933:644509..644657Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1510915933:643230..644055TCONS_00007944-exon-sc0000080-1510915933:643230..644055Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:649453..650527TCONS_00007944-exon-sc0000080-1491911889:649453..650527Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:648643..648816TCONS_00007944-exon-sc0000080-1491911889:648643..648816Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:648205..648273TCONS_00007944-exon-sc0000080-1491911889:648205..648273Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:647672..647779TCONS_00007944-exon-sc0000080-1491911889:647672..647779Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:646594..647057TCONS_00007944-exon-sc0000080-1491911889:646594..647057Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:645572..646427TCONS_00007944-exon-sc0000080-1491911889:645572..646427Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:644509..644657TCONS_00007944-exon-sc0000080-1491911889:644509..644657Clytia hemisphaericaexon
TCONS_00007944-exon-sc0000080-1491911889:643230..644055TCONS_00007944-exon-sc0000080-1491911889:643230..644055Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007944-proteinTCONS_00007944-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:643230..650527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.876516	0.466616	0.347638	0.368456	2.17027	1.89334	0.0402204	0.313258	0.351763	1.62771	7.48519e-05	1.49757	0.397724	0.225236	2.89732e-08	9.92377e-07	1.5942e-06	0.360816	0.166557	0.0228131	0.0181404	0	0.0139348	0.914407	0.862383	0.00891298	4.0086e-10	0.47021	0.00542119	1.91237e-07
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00007944 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.225e-40
Identity = 88/249 (35.34%), Postives = 140/249 (56.22%), Query Frame = -3 
Query:  342 GSNRLDWPWFFKNT---SFYPLNGTEPNILCNHARFNKQPMTDLMPNDTVYVTILRNPISQFESSFSYMTFDKILGMK---KSEDTLTEFFKDPEKVLVNYVLTQDLRINSDRLKLIQNGMFYDLGLESKDFKNNKEIYKKLEELDHQFHLVMMMEYFDESIVLLKRLLCWELDDFVYFRLKNRAESWRRHISKPLQKKITKWSQADVILYNHFNKTFWNILKNIDQD-FWHEVEMLKAKNTFMRNMCI 1067
            G N  D+P FF  +    + P  G   NI+CNH RF+   +  L+P + +++T+LR+P   FESSF Y  F  ++ +     + D LTEF +DP++             N      ++N +F+DLG ++    ++ ++ + + E++ +FHLV++ EYFDES+VLLK LLCWEL+D +YF+L  R +S    +S  L  + T W+  D  LY HFN +FW  ++   ++    EV  L+  N  MR +CI
Sbjct:  111 GRNDFDYPTFFARSLVQDYRP--GACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHY--FGPVVPLTWKLSAGDKLTEFLQDPDRYY---------DPNGFNAHYLRNLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICI 346
The following BLAST results are available for this feature:
BLAST of TCONS_00007944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G3ST12.225e-4035.34Galactosylceramide sulfotransferase OS=Homo sapien... [more]
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